TdcA1-ORF2 protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 990 |
| Acc65I | GGTACC | 1 cut(s) | 263 |
| AccB1I | GGYRCC | 1 cut(s) | 263 |
| AccII | CGCG | 1 cut(s) | 956 |
| AciI | CCGC | 6 cut(s) | 424, 557, 954, 1043, 1281, 1418 |
| AclI | AACGTT | 1 cut(s) | 306 |
| AcsI | RAATTY | 4 cut(s) | 495, 587, 1113, 1391 |
| AcuI | CTGAAG | 3 cut(s) | 873, 981, 996 |
| AdeI | CACNNNGTG | 2 cut(s) | 466, 1413 |
| AfaI | GTAC | 7 cut(s) | 59, 95, 197, 265, 518, 584, 1250 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 287, 1167, 1168, 1258 |
| AgsI | TTSAA | 8 cut(s) | 53, 122, 793, 1033, 1075, 1103, 1196, 1235 |
| AluBI | AGCT | 5 cut(s) | 32, 532, 821, 974, 1150 |
| AluI | AGCT | 5 cut(s) | 32, 532, 821, 974, 1150 |
| Alw26I | GTCTC | 4 cut(s) | 149, 918, 1093, 1363 |
| Ama87I | CYCGRG | 1 cut(s) | 1244 |
| ApeKI | GCWGC | 4 cut(s) | 16, 211, 357, 529 |
| ApoI | RAATTY | 4 cut(s) | 495, 587, 1113, 1391 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 425, 457 |
| Asp718I | GGTACC | 1 cut(s) | 263 |
| AspLEI | GCGC | 2 cut(s) | 958, 991 |
| AspS9I | GGNCC | 2 cut(s) | 450, 737 |
| AsuC2I | CCSGG | 3 cut(s) | 11, 99, 913 |
| AsuHPI | GGTGA | 4 cut(s) | 383, 994, 1250, 1349 |
| AvaI | CYCGRG | 1 cut(s) | 1244 |
| AvaII | GGWCC | 2 cut(s) | 450, 737 |
| AxyI | CCTNAGG | 1 cut(s) | 741 |
| BaeGI | GKGCMC | 1 cut(s) | 704 |
| BanI | GGYRCC | 1 cut(s) | 263 |
| BauI | CACGAG | 1 cut(s) | 992 |
| BbsI | GAAGAC | 4 cut(s) | 116, 220, 731, 784 |
| BbvI | GCAGC | 4 cut(s) | 28, 198, 369, 541 |
| BccI | CCATC | 5 cut(s) | 124, 275, 440, 474, 1221 |
| BciVI | GTATCC | 2 cut(s) | 311, 894 |
| BclI | TGATCA | 1 cut(s) | 642 |
| BcnI | CCSGG | 3 cut(s) | 11, 99, 913 |
| BcoDI | GTCTC | 4 cut(s) | 149, 918, 1093, 1363 |
| BfaI | CTAG | 4 cut(s) | 27, 656, 1151, 1293 |
| BfmI | CTRYAG | 1 cut(s) | 191 |
| BfuI | GTATCC | 2 cut(s) | 311, 894 |
| BisI | GCNGC | 6 cut(s) | 17, 212, 358, 530, 558, 1282 |
| BlpI | GCTNAGC | 1 cut(s) | 533 |
| BlsI | GCNGC | 6 cut(s) | 18, 213, 359, 531, 559, 1283 |
| Bme1390I | CCNGG | 3 cut(s) | 11, 99, 913 |
| Bme18I | GGWCC | 2 cut(s) | 450, 737 |
| BmeT110I | CYCGRG | 1 cut(s) | 1244 |
| BmgT120I | GGNCC | 2 cut(s) | 450, 737 |
| BmiI | GGNNCC | 2 cut(s) | 265, 451 |
| BmrFI | CCNGG | 3 cut(s) | 11, 99, 913 |
| BmsI | GCATC | 2 cut(s) | 198, 654 |
| BpiI | GAAGAC | 4 cut(s) | 116, 220, 731, 784 |
| BpmI | CTGGAG | 2 cut(s) | 649, 1075 |
| Bpu10I | CCTNAGC | 1 cut(s) | 341 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 533 |
| BpuEI | CTTGAG | 1 cut(s) | 801 |
| BpuMI | CCSGG | 3 cut(s) | 11, 99, 913 |
| BsaBI | GATNNNNATC | 1 cut(s) | 186 |
| BsaJI | CCNNGG | 3 cut(s) | 97, 216, 286 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 346, 376 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 287, 1167, 1168, 1258 |
| Bse118I | RCCGGY | 1 cut(s) | 1054 |
| Bse1I | ACTGG | 4 cut(s) | 632, 1092, 1169, 1205 |
| Bse21I | CCTNAGG | 1 cut(s) | 741 |
| Bse3DI | GCAATG | 2 cut(s) | 364, 1155 |
| Bse8I | GATNNNNATC | 1 cut(s) | 186 |
| BseDI | CCNNGG | 3 cut(s) | 97, 216, 286 |
| BseGI | GGATG | 4 cut(s) | 541, 873, 971, 1209 |
| BseJI | GATNNNNATC | 1 cut(s) | 186 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 287, 1167, 1168, 1258 |
| BseMI | GCAATG | 2 cut(s) | 364, 1155 |
| BseMII | CTCAG | 2 cut(s) | 487, 547 |
| BseNI | ACTGG | 4 cut(s) | 632, 1092, 1169, 1205 |
| BseSI | GKGCMC | 1 cut(s) | 704 |
| BseXI | GCAGC | 4 cut(s) | 28, 198, 369, 541 |
| BsgI | GTGCAG | 1 cut(s) | 35 |
| Bsh1236I | CGCG | 1 cut(s) | 956 |
| Bsh1285I | CGRYCG | 1 cut(s) | 168 |
| BshNI | GGYRCC | 1 cut(s) | 263 |
| BsiEI | CGRYCG | 1 cut(s) | 168 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1244 |
| BsiSI | CCGG | 4 cut(s) | 11, 99, 913, 1055 |
| BslFI | GGGAC | 1 cut(s) | 463 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 287, 1167, 1168, 1258 |
| BsmAI | GTCTC | 4 cut(s) | 149, 918, 1093, 1363 |
| BsmFI | GGGAC | 1 cut(s) | 463 |
| BsoBI | CYCGRG | 1 cut(s) | 1244 |
| Bsp1286I | GDGCHC | 1 cut(s) | 704 |
| Bsp143I | GATC | 3 cut(s) | 642, 754, 1240 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 533 |
| BspACI | CCGC | 6 cut(s) | 424, 557, 954, 1043, 1281, 1418 |
| BspCNI | CTCAG | 2 cut(s) | 486, 546 |
| BspFNI | CGCG | 1 cut(s) | 956 |
| BspLI | GGNNCC | 2 cut(s) | 265, 451 |
| BspT107I | GGYRCC | 1 cut(s) | 263 |
| BsrDI | GCAATG | 2 cut(s) | 364, 1155 |
| BsrFI | RCCGGY | 1 cut(s) | 1054 |
| BsrI | ACTGG | 4 cut(s) | 632, 1092, 1169, 1205 |
| BssAI | RCCGGY | 1 cut(s) | 1054 |
| BssECI | CCNNGG | 3 cut(s) | 97, 216, 286 |
| BssMI | GATC | 3 cut(s) | 642, 754, 1240 |
| BssSI | CACGAG | 1 cut(s) | 992 |
| Bst2BI | CACGAG | 1 cut(s) | 992 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 366, 986, 1051 |
| BstC8I | GCNNGC | 3 cut(s) | 72, 748, 1347 |
| BstDEI | CTNAG | 4 cut(s) | 341, 473, 533, 741 |
| BstDSI | CCRYGG | 2 cut(s) | 216, 286 |
| BstEII | GGTNACC | 1 cut(s) | 389 |
| BstF5I | GGATG | 4 cut(s) | 541, 873, 971, 1209 |
| BstFNI | CGCG | 1 cut(s) | 956 |
| BstHHI | GCGC | 2 cut(s) | 958, 991 |
| BstKTI | GATC | 3 cut(s) | 645, 757, 1243 |
| BstMAI | GTCTC | 4 cut(s) | 149, 918, 1093, 1363 |
| BstMBI | GATC | 3 cut(s) | 642, 754, 1240 |
| BstMCI | CGRYCG | 1 cut(s) | 168 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 366, 986, 1051 |
| BstNSI | RCATGY | 1 cut(s) | 251 |
| BstPI | GGTNACC | 1 cut(s) | 389 |
| BstSCI | CCNGG | 3 cut(s) | 9, 97, 911 |
| BstSFI | CTRYAG | 1 cut(s) | 191 |
| BstSLI | GKGCMC | 1 cut(s) | 704 |
| BstUI | CGCG | 1 cut(s) | 956 |
| BstV1I | GCAGC | 4 cut(s) | 28, 198, 369, 541 |
| BstV2I | GAAGAC | 4 cut(s) | 116, 220, 731, 784 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 553 |
| Bsu36I | CCTNAGG | 1 cut(s) | 741 |
| BsuI | GTATCC | 2 cut(s) | 311, 894 |
| BtgI | CCRYGG | 2 cut(s) | 216, 286 |
| BtgZI | GCGATG | 2 cut(s) | 360, 1311 |
| BtsCI | GGATG | 4 cut(s) | 541, 873, 971, 1209 |
| BtsI | GCAGTG | 3 cut(s) | 39, 198, 510 |
| BtsIMutI | CAGTG | 8 cut(s) | 39, 198, 277, 510, 697, 711, 1099, 1162 |
| Cac8I | GCNNGC | 3 cut(s) | 72, 748, 1347 |
| CfoI | GCGC | 2 cut(s) | 958, 991 |
| Cfr10I | RCCGGY | 1 cut(s) | 1054 |
| Cfr13I | GGNCC | 2 cut(s) | 450, 737 |
| CseI | GACGC | 1 cut(s) | 988 |
| Csp6I | GTAC | 7 cut(s) | 58, 94, 196, 264, 517, 583, 1249 |
| CviAII | CATG | 8 cut(s) | 244, 248, 253, 1009, 1051, 1145, 1403, 1410 |
| CviQI | GTAC | 7 cut(s) | 58, 94, 196, 264, 517, 583, 1249 |
| DdeI | CTNAG | 4 cut(s) | 341, 473, 533, 741 |
| DpnI | GATC | 3 cut(s) | 644, 756, 1242 |
| DpnII | GATC | 3 cut(s) | 642, 754, 1240 |
| DraIII | CACNNNGTG | 2 cut(s) | 466, 1413 |
| Eco47I | GGWCC | 2 cut(s) | 450, 737 |
| Eco57I | CTGAAG | 3 cut(s) | 873, 981, 996 |
| Eco81I | CCTNAGG | 1 cut(s) | 741 |
| Eco88I | CYCGRG | 1 cut(s) | 1244 |
| Eco91I | GGTNACC | 1 cut(s) | 389 |
| EcoO65I | GGTNACC | 1 cut(s) | 389 |
| EcoRI | GAATTC | 1 cut(s) | 1391 |
| EcoT22I | ATGCAT | 1 cut(s) | 249 |
| FaeI | CATG | 8 cut(s) | 247, 251, 256, 1012, 1054, 1148, 1406, 1413 |
| FaqI | GGGAC | 1 cut(s) | 463 |
| FatI | CATG | 8 cut(s) | 243, 247, 252, 1008, 1050, 1144, 1402, 1409 |
| FbaI | TGATCA | 1 cut(s) | 642 |
| Fnu4HI | GCNGC | 6 cut(s) | 17, 212, 358, 530, 558, 1282 |
| FokI | GGATG | 4 cut(s) | 528, 880, 978, 1196 |
| Fsp4HI | GCNGC | 6 cut(s) | 17, 212, 358, 530, 558, 1282 |
| FspBI | CTAG | 4 cut(s) | 27, 656, 1151, 1293 |
| FspI | TGCGCA | 1 cut(s) | 990 |
| GlaI | GCGC | 2 cut(s) | 957, 990 |
| GluI | GCNGC | 6 cut(s) | 17, 212, 358, 530, 558, 1282 |
| GsuI | CTGGAG | 2 cut(s) | 649, 1075 |
| HapII | CCGG | 4 cut(s) | 11, 99, 913, 1055 |
| HgaI | GACGC | 1 cut(s) | 988 |
| HhaI | GCGC | 2 cut(s) | 958, 991 |
| Hin1II | CATG | 8 cut(s) | 247, 251, 256, 1012, 1054, 1148, 1406, 1413 |
| Hin6I | GCGC | 2 cut(s) | 956, 989 |
| HinP1I | GCGC | 2 cut(s) | 956, 989 |
| HinfI | GANTC | 1 cut(s) | 1124 |
| HpaII | CCGG | 4 cut(s) | 11, 99, 913, 1055 |
| HphI | GGTGA | 4 cut(s) | 383, 994, 1250, 1349 |
| Hpy166II | GTNNAC | 3 cut(s) | 37, 94, 198 |
| Hpy188I | TCNGA | 3 cut(s) | 108, 476, 1327 |
| Hpy188III | TCNNGA | 8 cut(s) | 119, 332, 416, 592, 1187, 1226, 1244, 1315 |
| Hpy8I | GTNNAC | 3 cut(s) | 37, 94, 198 |
| HpyAV | CCTTC | 8 cut(s) | 31, 166, 413, 791, 897, 956, 1027, 1372 |
| HpyCH4IV | ACGT | 3 cut(s) | 135, 306, 1230 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 366, 986, 1051 |
| HpyF3I | CTNAG | 4 cut(s) | 341, 473, 533, 741 |
| HpySE526I | ACGT | 3 cut(s) | 135, 306, 1230 |
| Hsp92II | CATG | 8 cut(s) | 247, 251, 256, 1012, 1054, 1148, 1406, 1413 |
| HspAI | GCGC | 2 cut(s) | 956, 989 |
| KpnI | GGTACC | 1 cut(s) | 267 |
| Ksp22I | TGATCA | 1 cut(s) | 642 |
| Kzo9I | GATC | 3 cut(s) | 642, 754, 1240 |
| LmnI | GCTCC | 3 cut(s) | 354, 826, 1025 |
| Lsp1109I | GCAGC | 4 cut(s) | 28, 198, 369, 541 |
| LweI | GCATC | 2 cut(s) | 198, 654 |
| MaeI | CTAG | 4 cut(s) | 27, 656, 1151, 1293 |
| MaeII | ACGT | 3 cut(s) | 135, 306, 1230 |
| MaeIII | GTNAC | 2 cut(s) | 389, 1000 |
| MalI | GATC | 3 cut(s) | 644, 756, 1242 |
| MboI | GATC | 3 cut(s) | 642, 754, 1240 |
| MboII | GAAGA | 9 cut(s) | 121, 154, 220, 489, 503, 736, 789, 814, 859 |
| MhlI | GDGCHC | 1 cut(s) | 704 |
| MluCI | AATT | 7 cut(s) | 495, 587, 770, 855, 1113, 1350, 1391 |
| MlyI | GAGTC | 1 cut(s) | 1118 |
| MmeI | TCCRAC | 1 cut(s) | 103 |
| MnlI | CCTC | 4 cut(s) | 343, 480, 712, 825 |
| Mph1103I | ATGCAT | 1 cut(s) | 249 |
| MseI | TTAA | 4 cut(s) | 147, 510, 773, 1179 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1007 |
| MspI | CCGG | 4 cut(s) | 11, 99, 913, 1055 |
| MspR9I | CCNGG | 3 cut(s) | 11, 99, 913 |
| MvnI | CGCG | 1 cut(s) | 956 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 366, 986, 1051 |
| NciI | CCSGG | 3 cut(s) | 11, 99, 913 |
| NdeII | GATC | 3 cut(s) | 642, 754, 1240 |
| NlaIII | CATG | 8 cut(s) | 247, 251, 256, 1012, 1054, 1148, 1406, 1413 |
| NlaIV | GGNNCC | 2 cut(s) | 265, 451 |
| NmuCI | GTSAC | 2 cut(s) | 389, 1000 |
| NsbI | TGCGCA | 1 cut(s) | 990 |
| NsiI | ATGCAT | 1 cut(s) | 249 |
| NspI | RCATGY | 1 cut(s) | 251 |
| PaeR7I | CTCGAG | 1 cut(s) | 1244 |
| PkrI | GCNGC | 6 cut(s) | 18, 213, 359, 531, 559, 1283 |
| PleI | GAGTC | 1 cut(s) | 1118 |
| PpsI | GAGTC | 1 cut(s) | 1118 |
| Psp1406I | AACGTT | 1 cut(s) | 306 |
| PspEI | GGTNACC | 1 cut(s) | 389 |
| PspN4I | GGNNCC | 2 cut(s) | 265, 451 |
| PspPI | GGNCC | 2 cut(s) | 450, 737 |
| RsaI | GTAC | 7 cut(s) | 59, 95, 197, 265, 518, 584, 1250 |
| RsaNI | GTAC | 7 cut(s) | 58, 94, 196, 264, 517, 583, 1249 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1007 |
| SaqAI | TTAA | 4 cut(s) | 147, 510, 773, 1179 |
| SatI | GCNGC | 6 cut(s) | 17, 212, 358, 530, 558, 1282 |
| Sau3AI | GATC | 3 cut(s) | 642, 754, 1240 |
| Sau96I | GGNCC | 2 cut(s) | 450, 737 |
| SchI | GAGTC | 1 cut(s) | 1118 |
| ScrFI | CCNGG | 3 cut(s) | 11, 99, 913 |
| SduI | GDGCHC | 1 cut(s) | 704 |
| SfaNI | GCATC | 2 cut(s) | 198, 654 |
| SfcI | CTRYAG | 1 cut(s) | 191 |
| Sfr274I | CTCGAG | 1 cut(s) | 1244 |
| SinI | GGWCC | 2 cut(s) | 450, 737 |
| SlaI | CTCGAG | 1 cut(s) | 1244 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1007 |
| SmlI | CTYRAG | 2 cut(s) | 816, 1244 |
| SmoI | CTYRAG | 2 cut(s) | 816, 1244 |
| Sse9I | AATT | 7 cut(s) | 495, 587, 770, 855, 1113, 1350, 1391 |
| SsiI | CCGC | 6 cut(s) | 424, 557, 954, 1043, 1281, 1418 |
| SspMI | CTAG | 4 cut(s) | 27, 656, 1151, 1293 |
| StyD4I | CCNGG | 3 cut(s) | 9, 97, 911 |
| TaiI | ACGT | 3 cut(s) | 138, 309, 1233 |
| TaqI | TCGA | 4 cut(s) | 164, 206, 429, 1245 |
| TasI | AATT | 7 cut(s) | 495, 587, 770, 855, 1113, 1350, 1391 |
| TatI | WGTACW | 2 cut(s) | 57, 195 |
| TauI | GCSGC | 2 cut(s) | 560, 1284 |
| Tru1I | TTAA | 4 cut(s) | 147, 510, 773, 1179 |
| Tru9I | TTAA | 4 cut(s) | 147, 510, 773, 1179 |
| TscAI | CASTG | 8 cut(s) | 46, 205, 277, 510, 697, 711, 1099, 1169 |
| TseFI | GTSAC | 2 cut(s) | 389, 1000 |
| TseI | GCWGC | 4 cut(s) | 16, 211, 357, 529 |
| Tsp45I | GTSAC | 2 cut(s) | 389, 1000 |
| TspDTI | ATGAA | 3 cut(s) | 155, 1025, 1314 |
| TspRI | CASTG | 8 cut(s) | 46, 205, 277, 510, 697, 711, 1099, 1169 |
| VpaK11BI | GGWCC | 2 cut(s) | 450, 737 |
| XapI | RAATTY | 4 cut(s) | 495, 587, 1113, 1391 |
| XceI | RCATGY | 1 cut(s) | 251 |
| XhoI | CTCGAG | 1 cut(s) | 1244 |
| XspI | CTAG | 4 cut(s) | 27, 656, 1151, 1293 |
| Zsp2I | ATGCAT | 1 cut(s) | 249 |