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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 225 |
| Acc36I | ACCTGC | 1 cut(s) | 62 |
| AccI | GTMKAC | 1 cut(s) | 126 |
| AcsI | RAATTY | 1 cut(s) | 49 |
| AfaI | GTAC | 3 cut(s) | 187, 315, 565 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 446 |
| AflIII | ACRYGT | 1 cut(s) | 270 |
| AgsI | TTSAA | 1 cut(s) | 56 |
| AhlI | ACTAGT | 1 cut(s) | 560 |
| AjnI | CCWGG | 1 cut(s) | 178 |
| AluBI | AGCT | 3 cut(s) | 435, 569, 576 |
| AluI | AGCT | 3 cut(s) | 435, 569, 576 |
| Alw26I | GTCTC | 1 cut(s) | 455 |
| AoxI | GGCC | 1 cut(s) | 333 |
| ApeKI | GCWGC | 1 cut(s) | 435 |
| ApoI | RAATTY | 1 cut(s) | 49 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 382, 415 |
| BbvI | GCAGC | 1 cut(s) | 422 |
| BccI | CCATC | 1 cut(s) | 152 |
| BciT130I | CCWGG | 1 cut(s) | 180 |
| BclI | TGATCA | 1 cut(s) | 109 |
| BcoDI | GTCTC | 1 cut(s) | 455 |
| BcuI | ACTAGT | 1 cut(s) | 560 |
| BfaI | CTAG | 5 cut(s) | 432, 456, 500, 534, 561 |
| BfmI | CTRYAG | 1 cut(s) | 60 |
| BfuAI | ACCTGC | 1 cut(s) | 62 |
| BisI | GCNGC | 1 cut(s) | 436 |
| BlsI | GCNGC | 1 cut(s) | 437 |
| Bme1390I | CCNGG | 1 cut(s) | 180 |
| BmrFI | CCNGG | 1 cut(s) | 180 |
| BmsI | GCATC | 2 cut(s) | 244, 415 |
| BsaI | GGTCTC | 1 cut(s) | 455 |
| BsaJI | CCNNGG | 1 cut(s) | 178 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 446 |
| BseBI | CCWGG | 1 cut(s) | 180 |
| BseDI | CCNNGG | 1 cut(s) | 178 |
| BseGI | GGATG | 1 cut(s) | 163 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 446 |
| BseXI | GCAGC | 1 cut(s) | 422 |
| BshFI | GGCC | 1 cut(s) | 335 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 446 |
| BsmAI | GTCTC | 1 cut(s) | 455 |
| BsnI | GGCC | 1 cut(s) | 335 |
| Bso31I | GGTCTC | 1 cut(s) | 455 |
| Bsp143I | GATC | 1 cut(s) | 109 |
| BspANI | GGCC | 1 cut(s) | 335 |
| BspHI | TCATGA | 1 cut(s) | 112 |
| BspMI | ACCTGC | 1 cut(s) | 62 |
| BspTNI | GGTCTC | 1 cut(s) | 455 |
| BssECI | CCNNGG | 1 cut(s) | 178 |
| BssMI | GATC | 1 cut(s) | 109 |
| Bst2UI | CCWGG | 1 cut(s) | 180 |
| Bst4CI | ACNGT | 3 cut(s) | 61, 85, 398 |
| BstC8I | GCNNGC | 2 cut(s) | 259, 588 |
| BstF5I | GGATG | 1 cut(s) | 163 |
| BstKTI | GATC | 1 cut(s) | 112 |
| BstMAI | GTCTC | 1 cut(s) | 455 |
| BstMBI | GATC | 1 cut(s) | 109 |
| BstNI | CCWGG | 1 cut(s) | 180 |
| BstNSI | RCATGY | 4 cut(s) | 274, 383, 387, 590 |
| BstSCI | CCNGG | 1 cut(s) | 178 |
| BstSFI | CTRYAG | 1 cut(s) | 60 |
| BstV1I | GCAGC | 1 cut(s) | 422 |
| BsuRI | GGCC | 1 cut(s) | 335 |
| BtsCI | GGATG | 1 cut(s) | 163 |
| BtsIMutI | CAGTG | 1 cut(s) | 81 |
| BveI | ACCTGC | 1 cut(s) | 62 |
| Cac8I | GCNNGC | 2 cut(s) | 259, 588 |
| CciI | TCATGA | 1 cut(s) | 112 |
| Csp6I | GTAC | 3 cut(s) | 186, 314, 564 |
| CviAII | CATG | 8 cut(s) | 8, 113, 242, 271, 380, 384, 582, 587 |
| CviJI | RGCY | 5 cut(s) | 183, 335, 435, 569, 576 |
| CviKI_1 | RGCY | 5 cut(s) | 183, 335, 435, 569, 576 |
| CviQI | GTAC | 3 cut(s) | 186, 314, 564 |
| DpnI | GATC | 1 cut(s) | 111 |
| DpnII | GATC | 1 cut(s) | 109 |
| Eco31I | GGTCTC | 1 cut(s) | 455 |
| EcoRII | CCWGG | 1 cut(s) | 178 |
| EcoT22I | ATGCAT | 1 cut(s) | 385 |
| FaeI | CATG | 8 cut(s) | 11, 116, 245, 274, 383, 387, 585, 590 |
| FatI | CATG | 8 cut(s) | 7, 112, 241, 270, 379, 383, 581, 586 |
| FbaI | TGATCA | 1 cut(s) | 109 |
| FblI | GTMKAC | 1 cut(s) | 126 |
| Fnu4HI | GCNGC | 1 cut(s) | 436 |
| FokI | GGATG | 1 cut(s) | 170 |
| Fsp4HI | GCNGC | 1 cut(s) | 436 |
| FspBI | CTAG | 5 cut(s) | 432, 456, 500, 534, 561 |
| GluI | GCNGC | 1 cut(s) | 436 |
| HaeIII | GGCC | 1 cut(s) | 335 |
| Hin1II | CATG | 8 cut(s) | 11, 116, 245, 274, 383, 387, 585, 590 |
| HincII | GTYRAC | 1 cut(s) | 558 |
| HindII | GTYRAC | 1 cut(s) | 558 |
| HindIII | AAGCTT | 1 cut(s) | 574 |
| HinfI | GANTC | 2 cut(s) | 128, 537 |
| Hpy166II | GTNNAC | 2 cut(s) | 127, 558 |
| Hpy188I | TCNGA | 3 cut(s) | 106, 133, 542 |
| Hpy188III | TCNNGA | 2 cut(s) | 113, 299 |
| Hpy8I | GTNNAC | 2 cut(s) | 127, 558 |
| HpyAV | CCTTC | 1 cut(s) | 296 |
| HpyCH4III | ACNGT | 3 cut(s) | 61, 85, 398 |
| HpyCH4V | TGCA | 2 cut(s) | 353, 383 |
| Hsp92II | CATG | 8 cut(s) | 11, 116, 245, 274, 383, 387, 585, 590 |
| Ksp22I | TGATCA | 1 cut(s) | 109 |
| Kzo9I | GATC | 1 cut(s) | 109 |
| LpnPI | CCDG | 5 cut(s) | 57, 165, 192, 242, 312 |
| Lsp1109I | GCAGC | 1 cut(s) | 422 |
| LweI | GCATC | 2 cut(s) | 244, 415 |
| MaeI | CTAG | 5 cut(s) | 432, 456, 500, 534, 561 |
| MalI | GATC | 1 cut(s) | 111 |
| MboI | GATC | 1 cut(s) | 109 |
| MluCI | AATT | 3 cut(s) | 49, 364, 506 |
| MlyI | GAGTC | 1 cut(s) | 122 |
| MnlI | CCTC | 3 cut(s) | 148, 180, 325 |
| Mph1103I | ATGCAT | 1 cut(s) | 385 |
| MseI | TTAA | 3 cut(s) | 143, 203, 216 |
| MslI | CAYNNNNRTG | 1 cut(s) | 591 |
| MspR9I | CCNGG | 1 cut(s) | 180 |
| MvaI | CCWGG | 1 cut(s) | 180 |
| NdeII | GATC | 1 cut(s) | 109 |
| NlaIII | CATG | 8 cut(s) | 11, 116, 245, 274, 383, 387, 585, 590 |
| NsiI | ATGCAT | 1 cut(s) | 385 |
| NspI | RCATGY | 4 cut(s) | 274, 383, 387, 590 |
| PaeI | GCATGC | 1 cut(s) | 590 |
| PagI | TCATGA | 1 cut(s) | 112 |
| PciI | ACATGT | 1 cut(s) | 270 |
| PfeI | GAWTC | 1 cut(s) | 537 |
| PkrI | GCNGC | 1 cut(s) | 437 |
| PleI | GAGTC | 1 cut(s) | 122 |
| PpsI | GAGTC | 1 cut(s) | 122 |
| PscI | ACATGT | 1 cut(s) | 270 |
| PsiI | TTATAA | 1 cut(s) | 225 |
| Psp6I | CCWGG | 1 cut(s) | 178 |
| PspGI | CCWGG | 1 cut(s) | 178 |
| RsaI | GTAC | 3 cut(s) | 187, 315, 565 |
| RsaNI | GTAC | 3 cut(s) | 186, 314, 564 |
| RseI | CAYNNNNRTG | 1 cut(s) | 591 |
| SaqAI | TTAA | 3 cut(s) | 143, 203, 216 |
| SatI | GCNGC | 1 cut(s) | 436 |
| Sau3AI | GATC | 1 cut(s) | 109 |
| SchI | GAGTC | 1 cut(s) | 122 |
| ScrFI | CCNGG | 1 cut(s) | 180 |
| SfaNI | GCATC | 2 cut(s) | 244, 415 |
| SfcI | CTRYAG | 1 cut(s) | 60 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 591 |
| SpeI | ACTAGT | 1 cut(s) | 560 |
| SphI | GCATGC | 1 cut(s) | 590 |
| Sse9I | AATT | 3 cut(s) | 49, 364, 506 |
| SspI | AATATT | 1 cut(s) | 291 |
| SspMI | CTAG | 5 cut(s) | 432, 456, 500, 534, 561 |
| StyD4I | CCNGG | 1 cut(s) | 178 |
| TaaI | ACNGT | 3 cut(s) | 61, 85, 398 |
| TasI | AATT | 3 cut(s) | 49, 364, 506 |
| TatI | WGTACW | 1 cut(s) | 563 |
| TfiI | GAWTC | 1 cut(s) | 537 |
| Tru1I | TTAA | 3 cut(s) | 143, 203, 216 |
| Tru9I | TTAA | 3 cut(s) | 143, 203, 216 |
| TscAI | CASTG | 1 cut(s) | 88 |
| TseI | GCWGC | 1 cut(s) | 435 |
| TspDTI | ATGAA | 3 cut(s) | 324, 377, 384 |
| TspRI | CASTG | 1 cut(s) | 88 |
| XapI | RAATTY | 1 cut(s) | 49 |
| XceI | RCATGY | 4 cut(s) | 274, 383, 387, 590 |
| XmiI | GTMKAC | 1 cut(s) | 126 |
| XspI | CTAG | 5 cut(s) | 432, 456, 500, 534, 561 |
| Zsp2I | ATGCAT | 1 cut(s) | 385 |