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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 45, 66 |
| AccI | GTMKAC | 1 cut(s) | 650 |
| AciI | CCGC | 1 cut(s) | 594 |
| AcsI | RAATTY | 3 cut(s) | 4, 405, 568 |
| AcuI | CTGAAG | 2 cut(s) | 90, 114 |
| AcyI | GRCGYC | 1 cut(s) | 543 |
| AfaI | GTAC | 5 cut(s) | 181, 282, 512, 591, 603 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 539, 627 |
| AflIII | ACRYGT | 1 cut(s) | 536 |
| AgsI | TTSAA | 1 cut(s) | 143 |
| AjnI | CCWGG | 1 cut(s) | 271 |
| AluBI | AGCT | 3 cut(s) | 128, 329, 353 |
| AluI | AGCT | 3 cut(s) | 128, 329, 353 |
| Alw26I | GTCTC | 1 cut(s) | 550 |
| AoxI | GGCC | 1 cut(s) | 426 |
| ApoI | RAATTY | 3 cut(s) | 4, 405, 568 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 568 |
| AspA2I | CCTAGG | 1 cut(s) | 626 |
| AsuC2I | CCSGG | 1 cut(s) | 393 |
| AsuHPI | GGTGA | 2 cut(s) | 319, 392 |
| AvrII | CCTAGG | 1 cut(s) | 626 |
| BaeGI | GKGCMC | 1 cut(s) | 448 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 593, 626 |
| BbsI | GAAGAC | 1 cut(s) | 96 |
| BccI | CCATC | 2 cut(s) | 182, 448 |
| BciT130I | CCWGG | 1 cut(s) | 273 |
| BcnI | CCSGG | 1 cut(s) | 393 |
| BcoDI | GTCTC | 1 cut(s) | 550 |
| BfaI | CTAG | 4 cut(s) | 449, 549, 627, 663 |
| BlnI | CCTAGG | 1 cut(s) | 626 |
| Bme1390I | CCNGG | 2 cut(s) | 273, 393 |
| BmrFI | CCNGG | 2 cut(s) | 273, 393 |
| BmsI | GCATC | 2 cut(s) | 241, 394 |
| BpiI | GAAGAC | 1 cut(s) | 96 |
| Bpu10I | CCTNAGC | 1 cut(s) | 597 |
| BpuMI | CCSGG | 1 cut(s) | 393 |
| BsaHI | GRCGYC | 1 cut(s) | 543 |
| BsaJI | CCNNGG | 3 cut(s) | 271, 573, 626 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 194, 224 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 539, 627 |
| Bse3DI | GCAATG | 1 cut(s) | 232 |
| BseBI | CCWGG | 1 cut(s) | 273 |
| BseDI | CCNNGG | 3 cut(s) | 271, 573, 626 |
| BseGI | GGATG | 4 cut(s) | 193, 211, 256, 459 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 539, 627 |
| BseMI | GCAATG | 1 cut(s) | 232 |
| BseRI | GAGGAG | 1 cut(s) | 215 |
| BseSI | GKGCMC | 1 cut(s) | 448 |
| BshFI | GGCC | 1 cut(s) | 428 |
| BsiSI | CCGG | 1 cut(s) | 393 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 539, 627 |
| BsmAI | GTCTC | 1 cut(s) | 550 |
| BsmBI | CGTCTC | 1 cut(s) | 550 |
| BsnI | GGCC | 1 cut(s) | 428 |
| Bsp1286I | GDGCHC | 1 cut(s) | 448 |
| Bsp1407I | TGTACA | 1 cut(s) | 179 |
| BspACI | CCGC | 1 cut(s) | 594 |
| BspANI | GGCC | 1 cut(s) | 428 |
| BsrDI | GCAATG | 1 cut(s) | 232 |
| BsrGI | TGTACA | 1 cut(s) | 179 |
| BssECI | CCNNGG | 3 cut(s) | 271, 573, 626 |
| BssNI | GRCGYC | 1 cut(s) | 543 |
| BssT1I | CCWWGG | 2 cut(s) | 573, 626 |
| Bst2UI | CCWGG | 1 cut(s) | 273 |
| Bst4CI | ACNGT | 1 cut(s) | 510 |
| BstACI | GRCGYC | 1 cut(s) | 543 |
| BstAUI | TGTACA | 1 cut(s) | 179 |
| BstDEI | CTNAG | 2 cut(s) | 597, 675 |
| BstF5I | GGATG | 4 cut(s) | 193, 211, 256, 459 |
| BstMAI | GTCTC | 1 cut(s) | 550 |
| BstNI | CCWGG | 1 cut(s) | 273 |
| BstNSI | RCATGY | 3 cut(s) | 476, 480, 540 |
| BstSCI | CCNGG | 2 cut(s) | 271, 391 |
| BstSLI | GKGCMC | 1 cut(s) | 448 |
| BstV2I | GAAGAC | 1 cut(s) | 96 |
| BsuRI | GGCC | 1 cut(s) | 428 |
| BtgZI | GCGATG | 1 cut(s) | 360 |
| BtsCI | GGATG | 4 cut(s) | 193, 211, 256, 459 |
| CseI | GACGC | 1 cut(s) | 532 |
| Csp6I | GTAC | 5 cut(s) | 180, 281, 511, 590, 602 |
| CviAII | CATG | 5 cut(s) | 83, 335, 473, 477, 537 |
| CviJI | RGCY | 8 cut(s) | 128, 135, 262, 276, 329, 353, 367, 428 |
| CviKI_1 | RGCY | 8 cut(s) | 128, 135, 262, 276, 329, 353, 367, 428 |
| CviQI | GTAC | 5 cut(s) | 180, 281, 511, 590, 602 |
| DdeI | CTNAG | 2 cut(s) | 597, 675 |
| DraI | TTTAAA | 1 cut(s) | 324 |
| Eco130I | CCWWGG | 2 cut(s) | 573, 626 |
| Eco57I | CTGAAG | 2 cut(s) | 90, 114 |
| EcoRII | CCWGG | 1 cut(s) | 271 |
| EcoT14I | CCWWGG | 2 cut(s) | 573, 626 |
| EcoT22I | ATGCAT | 1 cut(s) | 478 |
| ErhI | CCWWGG | 2 cut(s) | 573, 626 |
| Esp3I | CGTCTC | 1 cut(s) | 550 |
| FaeI | CATG | 5 cut(s) | 86, 338, 476, 480, 540 |
| FatI | CATG | 5 cut(s) | 82, 334, 472, 476, 536 |
| FauI | CCCGC | 1 cut(s) | 601 |
| FblI | GTMKAC | 1 cut(s) | 650 |
| FokI | GGATG | 4 cut(s) | 200, 218, 263, 466 |
| FspBI | CTAG | 4 cut(s) | 449, 549, 627, 663 |
| HaeIII | GGCC | 1 cut(s) | 428 |
| HapII | CCGG | 1 cut(s) | 393 |
| HgaI | GACGC | 1 cut(s) | 532 |
| Hin1I | GRCGYC | 1 cut(s) | 543 |
| Hin1II | CATG | 5 cut(s) | 86, 338, 476, 480, 540 |
| HinfI | GANTC | 3 cut(s) | 31, 122, 143 |
| HpaII | CCGG | 1 cut(s) | 393 |
| HphI | GGTGA | 2 cut(s) | 319, 392 |
| Hpy166II | GTNNAC | 3 cut(s) | 281, 590, 651 |
| Hpy188I | TCNGA | 4 cut(s) | 148, 196, 220, 361 |
| Hpy8I | GTNNAC | 3 cut(s) | 281, 590, 651 |
| HpyAV | CCTTC | 1 cut(s) | 632 |
| HpyCH4III | ACNGT | 1 cut(s) | 510 |
| HpyCH4IV | ACGT | 1 cut(s) | 101 |
| HpyCH4V | TGCA | 4 cut(s) | 225, 254, 476, 492 |
| HpyF3I | CTNAG | 2 cut(s) | 597, 675 |
| HpySE526I | ACGT | 1 cut(s) | 101 |
| Hsp92I | GRCGYC | 1 cut(s) | 543 |
| Hsp92II | CATG | 5 cut(s) | 86, 338, 476, 480, 540 |
| LpnPI | CCDG | 7 cut(s) | 93, 117, 258, 285, 290, 406, 592 |
| LweI | GCATC | 2 cut(s) | 241, 394 |
| MaeI | CTAG | 4 cut(s) | 449, 549, 627, 663 |
| MaeII | ACGT | 1 cut(s) | 101 |
| MboII | GAAGA | 5 cut(s) | 96, 107, 131, 380, 478 |
| MfeI | CAATTG | 1 cut(s) | 526 |
| MhlI | GDGCHC | 1 cut(s) | 448 |
| MluCI | AATT | 6 cut(s) | 4, 149, 319, 405, 526, 568 |
| MlyI | GAGTC | 1 cut(s) | 25 |
| MnlI | CCTC | 6 cut(s) | 193, 196, 241, 389, 418, 577 |
| Mph1103I | ATGCAT | 1 cut(s) | 478 |
| MroXI | GAANNNNTTC | 1 cut(s) | 568 |
| MseI | TTAA | 4 cut(s) | 27, 234, 323, 633 |
| MslI | CAYNNNNRTG | 1 cut(s) | 220 |
| MspI | CCGG | 1 cut(s) | 393 |
| MspR9I | CCNGG | 2 cut(s) | 273, 393 |
| MunI | CAATTG | 1 cut(s) | 526 |
| MvaI | CCWGG | 1 cut(s) | 273 |
| NciI | CCSGG | 1 cut(s) | 393 |
| NlaIII | CATG | 5 cut(s) | 86, 338, 476, 480, 540 |
| NsiI | ATGCAT | 1 cut(s) | 478 |
| NspI | RCATGY | 3 cut(s) | 476, 480, 540 |
| PciI | ACATGT | 1 cut(s) | 536 |
| PdmI | GAANNNNTTC | 1 cut(s) | 568 |
| PfeI | GAWTC | 2 cut(s) | 122, 143 |
| PfoI | TCCNGGA | 1 cut(s) | 391 |
| PleI | GAGTC | 1 cut(s) | 25 |
| PpsI | GAGTC | 1 cut(s) | 25 |
| PscI | ACATGT | 1 cut(s) | 536 |
| PsiI | TTATAA | 2 cut(s) | 45, 66 |
| Psp6I | CCWGG | 1 cut(s) | 271 |
| PspGI | CCWGG | 1 cut(s) | 271 |
| RsaI | GTAC | 5 cut(s) | 181, 282, 512, 591, 603 |
| RsaNI | GTAC | 5 cut(s) | 180, 281, 511, 590, 602 |
| RseI | CAYNNNNRTG | 1 cut(s) | 220 |
| SaqAI | TTAA | 4 cut(s) | 27, 234, 323, 633 |
| SchI | GAGTC | 1 cut(s) | 25 |
| ScrFI | CCNGG | 2 cut(s) | 273, 393 |
| SduI | GDGCHC | 1 cut(s) | 448 |
| SfaNI | GCATC | 2 cut(s) | 241, 394 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 220 |
| Sse9I | AATT | 6 cut(s) | 4, 149, 319, 405, 526, 568 |
| SsiI | CCGC | 1 cut(s) | 594 |
| SspMI | CTAG | 4 cut(s) | 449, 549, 627, 663 |
| StyD4I | CCNGG | 2 cut(s) | 271, 391 |
| StyI | CCWWGG | 2 cut(s) | 573, 626 |
| TaaI | ACNGT | 1 cut(s) | 510 |
| TaiI | ACGT | 1 cut(s) | 104 |
| TaqI | TCGA | 1 cut(s) | 137 |
| TasI | AATT | 6 cut(s) | 4, 149, 319, 405, 526, 568 |
| TatI | WGTACW | 3 cut(s) | 179, 280, 510 |
| TfiI | GAWTC | 2 cut(s) | 122, 143 |
| Tru1I | TTAA | 4 cut(s) | 27, 234, 323, 633 |
| Tru9I | TTAA | 4 cut(s) | 27, 234, 323, 633 |
| TspDTI | ATGAA | 3 cut(s) | 17, 72, 204 |
| XapI | RAATTY | 3 cut(s) | 4, 405, 568 |
| XceI | RCATGY | 3 cut(s) | 476, 480, 540 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 436 |
| XmaJI | CCTAGG | 1 cut(s) | 626 |
| XmiI | GTMKAC | 1 cut(s) | 650 |
| XmnI | GAANNNNTTC | 1 cut(s) | 568 |
| XspI | CTAG | 4 cut(s) | 449, 549, 627, 663 |
| Zsp2I | ATGCAT | 1 cut(s) | 478 |