No description available
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Transpos_assoc | PF13963 | 3 - 75 | 6.7e-15 | Transposase-associated domain |
| Transposase_21 | PF02992 | 294 - 502 | 1.1e-87 | Transposase family tnp2 |
| DUF4218 | PF13960 | 689 - 729 | 6.6e-09 | Domain of unknown function (DUF4218) |
| DUF4218 | PF13960 | 729 - 769 | 1.6e-10 | Domain of unknown function (DUF4218) |
| DUF4216 | PF13952 | 936 - 1008 | 3.9e-21 | Domain of unknown function (DUF4216) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 603, 642 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 270 |
| Acc16I | TGCGCA | 1 cut(s) | 611 |
| Acc36I | ACCTGC | 2 cut(s) | 1068, 2999 |
| AccBSI | CCGCTC | 2 cut(s) | 1578, 1741 |
| AccI | GTMKAC | 1 cut(s) | 121 |
| AccII | CGCG | 1 cut(s) | 2617 |
| AclI | AACGTT | 1 cut(s) | 2874 |
| AclWI | GGATC | 7 cut(s) | 1413, 1529, 1755, 1804, 2904, 2939, 2987 |
| AcoI | YGGCCR | 1 cut(s) | 1548 |
| AcsI | RAATTY | 5 cut(s) | 54, 648, 698, 1432, 1488 |
| AcuI | CTGAAG | 1 cut(s) | 3114 |
| AfaI | GTAC | 9 cut(s) | 164, 240, 298, 1030, 1499, 2071, 2409, 2492, 2887 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 325, 905, 1280, 1331, 3002 |
| AflII | CTTAAG | 1 cut(s) | 2081 |
| AflIII | ACRYGT | 1 cut(s) | 825 |
| AgeI | ACCGGT | 1 cut(s) | 1990 |
| AjnI | CCWGG | 4 cut(s) | 280, 454, 1114, 1129 |
| AleI | CACNNNNGTG | 2 cut(s) | 1471, 2272 |
| AluBI | AGCT | 6 cut(s) | 1017, 1863, 2042, 2660, 2969, 3193 |
| AluI | AGCT | 6 cut(s) | 1017, 1863, 2042, 2660, 2969, 3193 |
| Alw26I | GTCTC | 4 cut(s) | 824, 1145, 1150, 1299 |
| AlwI | GGATC | 7 cut(s) | 1413, 1529, 1755, 1804, 2904, 2939, 2987 |
| Ama87I | CYCGRG | 1 cut(s) | 2198 |
| AoxI | GGCC | 3 cut(s) | 631, 1034, 1548 |
| ApeKI | GCWGC | 2 cut(s) | 950, 1975 |
| ApoI | RAATTY | 5 cut(s) | 54, 648, 698, 1432, 1488 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 3161, 3193 |
| AsiGI | ACCGGT | 1 cut(s) | 1990 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 105, 2396 |
| AspLEI | GCGC | 2 cut(s) | 612, 2617 |
| AspS9I | GGNCC | 4 cut(s) | 316, 1118, 1257, 2509 |
| AsuC2I | CCSGG | 1 cut(s) | 304 |
| AsuHPI | GGTGA | 5 cut(s) | 233, 1346, 1493, 2171, 2621 |
| AsuII | TTCGAA | 1 cut(s) | 961 |
| AvaI | CYCGRG | 1 cut(s) | 2198 |
| AvaII | GGWCC | 4 cut(s) | 316, 1118, 1257, 2509 |
| BalI | TGGCCA | 1 cut(s) | 1550 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 806, 838 |
| BauI | CACGAG | 1 cut(s) | 2387 |
| BbsI | GAAGAC | 5 cut(s) | 152, 822, 1976, 2113, 3342 |
| BbvI | GCAGC | 2 cut(s) | 962, 1962 |
| BccI | CCATC | 9 cut(s) | 358, 751, 849, 899, 1433, 1739, 1787, 2131, 2887 |
| BceAI | ACGGC | 1 cut(s) | 1371 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1256, 1290 |
| BciT130I | CCWGG | 4 cut(s) | 282, 456, 1116, 1131 |
| BciVI | GTATCC | 3 cut(s) | 462, 609, 1210 |
| BclI | TGATCA | 3 cut(s) | 1483, 3088, 3268 |
| BcnI | CCSGG | 1 cut(s) | 304 |
| BcoDI | GTCTC | 4 cut(s) | 824, 1145, 1150, 1299 |
| BfaI | CTAG | 8 cut(s) | 177, 291, 428, 807, 1350, 1649, 2073, 2579 |
| BfmI | CTRYAG | 2 cut(s) | 900, 2782 |
| BfrI | CTTAAG | 1 cut(s) | 2081 |
| BfuAI | ACCTGC | 2 cut(s) | 1068, 2999 |
| BfuI | GTATCC | 3 cut(s) | 462, 609, 1210 |
| BisI | GCNGC | 4 cut(s) | 951, 1976, 2676, 3057 |
| BlsI | GCNGC | 4 cut(s) | 952, 1977, 2677, 3058 |
| BmcAI | AGTACT | 2 cut(s) | 1030, 1499 |
| Bme1390I | CCNGG | 5 cut(s) | 282, 304, 456, 1116, 1131 |
| Bme18I | GGWCC | 4 cut(s) | 316, 1118, 1257, 2509 |
| BmeT110I | CYCGRG | 1 cut(s) | 2198 |
| BmgT120I | GGNCC | 4 cut(s) | 316, 1118, 1257, 2509 |
| BmiI | GGNNCC | 1 cut(s) | 318 |
| BmrFI | CCNGG | 5 cut(s) | 282, 304, 456, 1116, 1131 |
| BpiI | GAAGAC | 5 cut(s) | 152, 822, 1976, 2113, 3342 |
| BpmI | CTGGAG | 1 cut(s) | 1113 |
| Bpu14I | TTCGAA | 1 cut(s) | 961 |
| BpuEI | CTTGAG | 3 cut(s) | 1772, 2949, 3215 |
| BpuMI | CCSGG | 1 cut(s) | 304 |
| BsaBI | GATNNNNATC | 4 cut(s) | 1404, 2526, 2908, 3090 |
| BsaI | GGTCTC | 1 cut(s) | 1150 |
| BsaJI | CCNNGG | 7 cut(s) | 259, 455, 628, 634, 773, 1466, 2253 |
| BsaWI | WCCGGW | 1 cut(s) | 1990 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 325, 905, 1280, 1331, 3002 |
| Bse118I | RCCGGY | 1 cut(s) | 1990 |
| Bse1I | ACTGG | 2 cut(s) | 1325, 1589 |
| Bse8I | GATNNNNATC | 4 cut(s) | 1404, 2526, 2908, 3090 |
| BseBI | CCWGG | 4 cut(s) | 282, 456, 1116, 1131 |
| BseDI | CCNNGG | 7 cut(s) | 259, 455, 628, 634, 773, 1466, 2253 |
| BseGI | GGATG | 5 cut(s) | 21, 277, 895, 2014, 2592 |
| BseJI | GATNNNNATC | 4 cut(s) | 1404, 2526, 2908, 3090 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 325, 905, 1280, 1331, 3002 |
| BseMII | CTCAG | 3 cut(s) | 904, 1059, 2372 |
| BseNI | ACTGG | 2 cut(s) | 1325, 1589 |
| BseXI | GCAGC | 2 cut(s) | 962, 1962 |
| BsgI | GTGCAG | 2 cut(s) | 2496, 3027 |
| Bsh1236I | CGCG | 1 cut(s) | 2617 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1394 |
| BshFI | GGCC | 3 cut(s) | 633, 1036, 1550 |
| BshTI | ACCGGT | 1 cut(s) | 1990 |
| BsiEI | CGRYCG | 1 cut(s) | 1394 |
| BsiHKCI | CYCGRG | 1 cut(s) | 2198 |
| BsiSI | CCGG | 2 cut(s) | 303, 1991 |
| BslFI | GGGAC | 2 cut(s) | 699, 3227 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 325, 905, 1280, 1331, 3002 |
| BsmAI | GTCTC | 4 cut(s) | 824, 1145, 1150, 1299 |
| BsmBI | CGTCTC | 2 cut(s) | 824, 1299 |
| BsmFI | GGGAC | 2 cut(s) | 699, 3227 |
| BsnI | GGCC | 3 cut(s) | 633, 1036, 1550 |
| Bso31I | GGTCTC | 1 cut(s) | 1150 |
| BsoBI | CYCGRG | 1 cut(s) | 2198 |
| Bsp119I | TTCGAA | 1 cut(s) | 961 |
| Bsp1407I | TGTACA | 1 cut(s) | 162 |
| BspANI | GGCC | 3 cut(s) | 633, 1036, 1550 |
| BspCNI | CTCAG | 3 cut(s) | 903, 1060, 2371 |
| BspFNI | CGCG | 1 cut(s) | 2617 |
| BspHI | TCATGA | 3 cut(s) | 1957, 2172, 3094 |
| BspLI | GGNNCC | 1 cut(s) | 318 |
| BspMAI | CTGCAG | 1 cut(s) | 904 |
| BspMI | ACCTGC | 2 cut(s) | 1068, 2999 |
| BspPI | GGATC | 7 cut(s) | 1413, 1529, 1755, 1804, 2904, 2939, 2987 |
| BspT104I | TTCGAA | 1 cut(s) | 961 |
| BspTI | CTTAAG | 1 cut(s) | 2081 |
| BspTNI | GGTCTC | 1 cut(s) | 1150 |
| BsrBI | CCGCTC | 2 cut(s) | 1578, 1741 |
| BsrFI | RCCGGY | 1 cut(s) | 1990 |
| BsrGI | TGTACA | 1 cut(s) | 162 |
| BsrI | ACTGG | 2 cut(s) | 1325, 1589 |
| BssAI | RCCGGY | 1 cut(s) | 1990 |
| BssECI | CCNNGG | 7 cut(s) | 259, 455, 628, 634, 773, 1466, 2253 |
| BssSI | CACGAG | 1 cut(s) | 2387 |
| BssT1I | CCWWGG | 1 cut(s) | 773 |
| Bst2BI | CACGAG | 1 cut(s) | 2387 |
| Bst2UI | CCWGG | 4 cut(s) | 282, 456, 1116, 1131 |
| Bst4CI | ACNGT | 9 cut(s) | 151, 272, 472, 1283, 2323, 2474, 2693, 2800, 3111 |
| Bst6I | CTCTTC | 3 cut(s) | 132, 1520, 1946 |
| BstAFI | CTTAAG | 1 cut(s) | 2081 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 2264, 2351 |
| BstAUI | TGTACA | 1 cut(s) | 162 |
| BstBI | TTCGAA | 1 cut(s) | 961 |
| BstC8I | GCNNGC | 7 cut(s) | 435, 658, 1359, 1772, 2157, 2658, 3292 |
| BstDEI | CTNAG | 5 cut(s) | 890, 1068, 2035, 2099, 2358 |
| BstDSI | CCRYGG | 1 cut(s) | 1466 |
| BstF5I | GGATG | 5 cut(s) | 21, 277, 895, 2014, 2592 |
| BstFNI | CGCG | 1 cut(s) | 2617 |
| BstHHI | GCGC | 2 cut(s) | 612, 2617 |
| BstMAI | GTCTC | 4 cut(s) | 824, 1145, 1150, 1299 |
| BstMCI | CGRYCG | 1 cut(s) | 1394 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 1780, 2264, 2351, 2966 |
| BstNI | CCWGG | 4 cut(s) | 282, 456, 1116, 1131 |
| BstNSI | RCATGY | 6 cut(s) | 568, 829, 1099, 1361, 2649, 2682 |
| BstSCI | CCNGG | 5 cut(s) | 280, 302, 454, 1114, 1129 |
| BstSFI | CTRYAG | 2 cut(s) | 900, 2782 |
| BstUI | CGCG | 1 cut(s) | 2617 |
| BstV1I | GCAGC | 2 cut(s) | 962, 1962 |
| BstV2I | GAAGAC | 5 cut(s) | 152, 822, 1976, 2113, 3342 |
| BstX2I | RGATCY | 1 cut(s) | 1747 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1473 |
| BstYI | RGATCY | 1 cut(s) | 1747 |
| BsuI | GTATCC | 3 cut(s) | 462, 609, 1210 |
| BsuRI | GGCC | 3 cut(s) | 633, 1036, 1550 |
| BtgI | CCRYGG | 1 cut(s) | 1466 |
| BtsCI | GGATG | 5 cut(s) | 21, 277, 895, 2014, 2592 |
| BtsI | GCAGTG | 1 cut(s) | 837 |
| BtsIMutI | CAGTG | 7 cut(s) | 399, 491, 837, 1332, 2698, 2796, 2862 |
| BveI | ACCTGC | 2 cut(s) | 1068, 2999 |
| Cac8I | GCNNGC | 7 cut(s) | 435, 658, 1359, 1772, 2157, 2658, 3292 |
| CciI | TCATGA | 3 cut(s) | 1957, 2172, 3094 |
| CfoI | GCGC | 2 cut(s) | 612, 2617 |
| Cfr10I | RCCGGY | 1 cut(s) | 1990 |
| Cfr13I | GGNCC | 4 cut(s) | 316, 1118, 1257, 2509 |
| CseI | GACGC | 1 cut(s) | 806 |
| Csp6I | GTAC | 9 cut(s) | 163, 239, 297, 1029, 1498, 2070, 2408, 2491, 2886 |
| CspAI | ACCGGT | 1 cut(s) | 1990 |
| CviQI | GTAC | 9 cut(s) | 163, 239, 297, 1029, 1498, 2070, 2408, 2491, 2886 |
| DdeI | CTNAG | 5 cut(s) | 890, 1068, 2035, 2099, 2358 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 270 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 270 |
| EaeI | YGGCCR | 1 cut(s) | 1548 |
| Eam1104I | CTCTTC | 3 cut(s) | 132, 1520, 1946 |
| EarI | CTCTTC | 3 cut(s) | 132, 1520, 1946 |
| Eco130I | CCWWGG | 1 cut(s) | 773 |
| Eco31I | GGTCTC | 1 cut(s) | 1150 |
| Eco47I | GGWCC | 4 cut(s) | 316, 1118, 1257, 2509 |
| Eco57I | CTGAAG | 1 cut(s) | 3114 |
| Eco88I | CYCGRG | 1 cut(s) | 2198 |
| EcoRI | GAATTC | 1 cut(s) | 54 |
| EcoRII | CCWGG | 4 cut(s) | 280, 454, 1114, 1129 |
| EcoT14I | CCWWGG | 1 cut(s) | 773 |
| EcoT22I | ATGCAT | 1 cut(s) | 2527 |
| ErhI | CCWWGG | 1 cut(s) | 773 |
| Esp3I | CGTCTC | 2 cut(s) | 824, 1299 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 1440, 1472, 3177, 3209 |
| FaqI | GGGAC | 2 cut(s) | 699, 3227 |
| FauI | CCCGC | 4 cut(s) | 328, 1571, 1779, 2164 |
| FauNDI | CATATG | 1 cut(s) | 1758 |
| FbaI | TGATCA | 3 cut(s) | 1483, 3088, 3268 |
| FblI | GTMKAC | 1 cut(s) | 121 |
| Fnu4HI | GCNGC | 4 cut(s) | 951, 1976, 2676, 3057 |
| FokI | GGATG | 5 cut(s) | 28, 264, 882, 2001, 2599 |
| Fsp4HI | GCNGC | 4 cut(s) | 951, 1976, 2676, 3057 |
| FspBI | CTAG | 8 cut(s) | 177, 291, 428, 807, 1350, 1649, 2073, 2579 |
| FspI | TGCGCA | 1 cut(s) | 611 |
| GlaI | GCGC | 2 cut(s) | 611, 2616 |
| GluI | GCNGC | 4 cut(s) | 951, 1976, 2676, 3057 |
| GsuI | CTGGAG | 1 cut(s) | 1113 |
| HaeIII | GGCC | 3 cut(s) | 633, 1036, 1550 |
| HapII | CCGG | 2 cut(s) | 303, 1991 |
| HgaI | GACGC | 1 cut(s) | 806 |
| HhaI | GCGC | 2 cut(s) | 612, 2617 |
| Hin6I | GCGC | 2 cut(s) | 610, 2615 |
| HinP1I | GCGC | 2 cut(s) | 610, 2615 |
| HincII | GTYRAC | 2 cut(s) | 2689, 3025 |
| HindII | GTYRAC | 2 cut(s) | 2689, 3025 |
| HpaI | GTTAAC | 1 cut(s) | 3025 |
| HpaII | CCGG | 2 cut(s) | 303, 1991 |
| HphI | GGTGA | 5 cut(s) | 233, 1346, 1493, 2171, 2621 |
| Hpy166II | GTNNAC | 6 cut(s) | 122, 1257, 2592, 2651, 2689, 3025 |
| Hpy8I | GTNNAC | 6 cut(s) | 122, 1257, 2592, 2651, 2689, 3025 |
| Hpy99I | CGWCG | 4 cut(s) | 1392, 2318, 2884, 3173 |
| HpyAV | CCTTC | 7 cut(s) | 596, 751, 759, 772, 1078, 2234, 2717 |
| HpyCH4III | ACNGT | 9 cut(s) | 151, 272, 472, 1283, 2323, 2474, 2693, 2800, 3111 |
| HpyCH4IV | ACGT | 6 cut(s) | 1103, 1981, 2406, 2874, 3027, 3171 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 1780, 2264, 2351, 2966 |
| HpyF3I | CTNAG | 5 cut(s) | 890, 1068, 2035, 2099, 2358 |
| HpySE526I | ACGT | 6 cut(s) | 1103, 1981, 2406, 2874, 3027, 3171 |
| HspAI | GCGC | 2 cut(s) | 610, 2615 |
| Ksp22I | TGATCA | 3 cut(s) | 1483, 3088, 3268 |
| KspAI | GTTAAC | 1 cut(s) | 3025 |
| Lsp1109I | GCAGC | 2 cut(s) | 962, 1962 |
| MaeI | CTAG | 8 cut(s) | 177, 291, 428, 807, 1350, 1649, 2073, 2579 |
| MaeII | ACGT | 6 cut(s) | 1103, 1981, 2406, 2874, 3027, 3171 |
| MaeIII | GTNAC | 9 cut(s) | 21, 32, 1020, 1300, 2231, 2278, 2618, 2704, 3033 |
| MbiI | CCGCTC | 2 cut(s) | 1578, 1741 |
| MfeI | CAATTG | 2 cut(s) | 2247, 2832 |
| MflI | RGATCY | 1 cut(s) | 1747 |
| MlsI | TGGCCA | 1 cut(s) | 1550 |
| MluNI | TGGCCA | 1 cut(s) | 1550 |
| MlyI | GAGTC | 3 cut(s) | 417, 1963, 3063 |
| MmeI | TCCRAC | 4 cut(s) | 549, 556, 1725, 2993 |
| Mox20I | TGGCCA | 1 cut(s) | 1550 |
| Mph1103I | ATGCAT | 1 cut(s) | 2527 |
| MroXI | GAANNNNTTC | 2 cut(s) | 105, 2396 |
| MscI | TGGCCA | 1 cut(s) | 1550 |
| MslI | CAYNNNNRTG | 9 cut(s) | 90, 219, 1471, 1893, 2019, 2272, 2274, 2457, 2670 |
| Msp20I | TGGCCA | 1 cut(s) | 1550 |
| MspA1I | CMGCKG | 1 cut(s) | 1863 |
| MspCI | CTTAAG | 1 cut(s) | 2081 |
| MspI | CCGG | 2 cut(s) | 303, 1991 |
| MspR9I | CCNGG | 5 cut(s) | 282, 304, 456, 1116, 1131 |
| MunI | CAATTG | 2 cut(s) | 2247, 2832 |
| MvaI | CCWGG | 4 cut(s) | 282, 456, 1116, 1131 |
| MvnI | CGCG | 1 cut(s) | 2617 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 1780, 2264, 2351, 2966 |
| NciI | CCSGG | 1 cut(s) | 304 |
| NdeI | CATATG | 1 cut(s) | 1758 |
| NlaIV | GGNNCC | 1 cut(s) | 318 |
| NmeAIII | GCCGAG | 2 cut(s) | 609, 2278 |
| NmuCI | GTSAC | 5 cut(s) | 32, 1020, 1300, 2704, 3033 |
| NsbI | TGCGCA | 1 cut(s) | 611 |
| NsiI | ATGCAT | 1 cut(s) | 2527 |
| NspI | RCATGY | 6 cut(s) | 568, 829, 1099, 1361, 2649, 2682 |
| NspV | TTCGAA | 1 cut(s) | 961 |
| OliI | CACNNNNGTG | 2 cut(s) | 1471, 2272 |
| PaeI | GCATGC | 1 cut(s) | 1361 |
| PagI | TCATGA | 3 cut(s) | 1957, 2172, 3094 |
| PciI | ACATGT | 1 cut(s) | 825 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 2319, 2885 |
| PdmI | GAANNNNTTC | 2 cut(s) | 105, 2396 |
| PfeI | GAWTC | 7 cut(s) | 728, 2176, 2821, 3122, 3136, 3281, 3323 |
| PflFI | GACNNNGTC | 1 cut(s) | 270 |
| PfoI | TCCNGGA | 1 cut(s) | 1129 |
| PinAI | ACCGGT | 1 cut(s) | 1990 |
| PkrI | GCNGC | 4 cut(s) | 952, 1977, 2677, 3058 |
| Ple19I | CGATCG | 1 cut(s) | 1394 |
| PleI | GAGTC | 3 cut(s) | 417, 1962, 3063 |
| PpsI | GAGTC | 3 cut(s) | 417, 1962, 3063 |
| PscI | ACATGT | 1 cut(s) | 825 |
| PsiI | TTATAA | 2 cut(s) | 603, 642 |
| Psp1406I | AACGTT | 1 cut(s) | 2874 |
| Psp6I | CCWGG | 4 cut(s) | 280, 454, 1114, 1129 |
| PspGI | CCWGG | 4 cut(s) | 280, 454, 1114, 1129 |
| PspN4I | GGNNCC | 1 cut(s) | 318 |
| PspPI | GGNCC | 4 cut(s) | 316, 1118, 1257, 2509 |
| PstI | CTGCAG | 1 cut(s) | 904 |
| PsuI | RGATCY | 1 cut(s) | 1747 |
| PsyI | GACNNNGTC | 1 cut(s) | 270 |
| PvuI | CGATCG | 1 cut(s) | 1394 |
| PvuII | CAGCTG | 1 cut(s) | 1863 |
| RsaI | GTAC | 9 cut(s) | 164, 240, 298, 1030, 1499, 2071, 2409, 2492, 2887 |
| RsaNI | GTAC | 9 cut(s) | 163, 239, 297, 1029, 1498, 2070, 2408, 2491, 2886 |
| RseI | CAYNNNNRTG | 9 cut(s) | 90, 219, 1471, 1893, 2019, 2272, 2274, 2457, 2670 |
| SatI | GCNGC | 4 cut(s) | 951, 1976, 2676, 3057 |
| Sau96I | GGNCC | 4 cut(s) | 316, 1118, 1257, 2509 |
| ScaI | AGTACT | 2 cut(s) | 1030, 1499 |
| SchI | GAGTC | 3 cut(s) | 417, 1963, 3063 |
| ScrFI | CCNGG | 5 cut(s) | 282, 304, 456, 1116, 1131 |
| SfcI | CTRYAG | 2 cut(s) | 900, 2782 |
| SfuI | TTCGAA | 1 cut(s) | 961 |
| SinI | GGWCC | 4 cut(s) | 316, 1118, 1257, 2509 |
| SmiMI | CAYNNNNRTG | 9 cut(s) | 90, 219, 1471, 1893, 2019, 2272, 2274, 2457, 2670 |
| SmlI | CTYRAG | 4 cut(s) | 1751, 2081, 2964, 3194 |
| SmoI | CTYRAG | 4 cut(s) | 1751, 2081, 2964, 3194 |
| SphI | GCATGC | 1 cut(s) | 1361 |
| SspI | AATATT | 1 cut(s) | 1708 |
| SspMI | CTAG | 8 cut(s) | 177, 291, 428, 807, 1350, 1649, 2073, 2579 |
| StyD4I | CCNGG | 5 cut(s) | 280, 302, 454, 1114, 1129 |
| StyI | CCWWGG | 1 cut(s) | 773 |
| TaaI | ACNGT | 9 cut(s) | 151, 272, 472, 1283, 2323, 2474, 2693, 2800, 3111 |
| TaiI | ACGT | 6 cut(s) | 1106, 1984, 2409, 2877, 3030, 3174 |
| TaqII | GACCGA | 1 cut(s) | 266 |
| TatI | WGTACW | 5 cut(s) | 162, 1028, 1497, 2069, 2490 |
| TauI | GCSGC | 2 cut(s) | 2678, 3059 |
| TfiI | GAWTC | 7 cut(s) | 728, 2176, 2821, 3122, 3136, 3281, 3323 |
| TscAI | CASTG | 7 cut(s) | 406, 498, 844, 1332, 2698, 2803, 2869 |
| TseFI | GTSAC | 5 cut(s) | 32, 1020, 1300, 2704, 3033 |
| TseI | GCWGC | 2 cut(s) | 950, 1975 |
| Tsp45I | GTSAC | 5 cut(s) | 32, 1020, 1300, 2704, 3033 |
| TspGWI | ACGGA | 2 cut(s) | 40, 2937 |
| TspRI | CASTG | 7 cut(s) | 406, 498, 844, 1332, 2698, 2803, 2869 |
| Tth111I | GACNNNGTC | 1 cut(s) | 270 |
| Vha464I | CTTAAG | 1 cut(s) | 2081 |
| VpaK11BI | GGWCC | 4 cut(s) | 316, 1118, 1257, 2509 |
| XapI | RAATTY | 5 cut(s) | 54, 648, 698, 1432, 1488 |
| XceI | RCATGY | 6 cut(s) | 568, 829, 1099, 1361, 2649, 2682 |
| XmiI | GTMKAC | 1 cut(s) | 121 |
| XmnI | GAANNNNTTC | 2 cut(s) | 105, 2396 |
| XspI | CTAG | 8 cut(s) | 177, 291, 428, 807, 1350, 1649, 2073, 2579 |
| ZrmI | AGTACT | 2 cut(s) | 1030, 1499 |
| Zsp2I | ATGCAT | 1 cut(s) | 2527 |