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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 4 cut(s) | 80, 298, 459, 930 |
| AclWI | GGATC | 4 cut(s) | 312, 634, 647, 794 |
| AcsI | RAATTY | 2 cut(s) | 86, 239 |
| AcuI | CTGAAG | 2 cut(s) | 63, 93 |
| AfaI | GTAC | 1 cut(s) | 521 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 164, 480, 612 |
| AgsI | TTSAA | 5 cut(s) | 86, 227, 277, 788, 860 |
| AleI | CACNNNNGTG | 1 cut(s) | 749 |
| AluBI | AGCT | 8 cut(s) | 35, 209, 249, 548, 619, 697, 936, 971 |
| AluI | AGCT | 8 cut(s) | 35, 209, 249, 548, 619, 697, 936, 971 |
| Alw21I | GWGCWC | 2 cut(s) | 172, 264 |
| Alw26I | GTCTC | 1 cut(s) | 831 |
| AlwI | GGATC | 4 cut(s) | 312, 634, 647, 794 |
| AoxI | GGCC | 2 cut(s) | 38, 155 |
| ApoI | RAATTY | 2 cut(s) | 86, 239 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 776 |
| AsuHPI | GGTGA | 1 cut(s) | 881 |
| AsuII | TTCGAA | 1 cut(s) | 25 |
| BamHI | GGATCC | 1 cut(s) | 639 |
| BauI | CACGAG | 1 cut(s) | 138 |
| BbsI | GAAGAC | 1 cut(s) | 117 |
| Bbv12I | GWGCWC | 2 cut(s) | 172, 264 |
| BccI | CCATC | 3 cut(s) | 139, 396, 905 |
| BceAI | ACGGC | 2 cut(s) | 205, 898 |
| BciVI | GTATCC | 1 cut(s) | 953 |
| BclI | TGATCA | 1 cut(s) | 570 |
| BcoDI | GTCTC | 1 cut(s) | 831 |
| BfaI | CTAG | 3 cut(s) | 36, 549, 555 |
| BfmI | CTRYAG | 1 cut(s) | 841 |
| BfuI | GTATCC | 1 cut(s) | 953 |
| BglII | AGATCT | 1 cut(s) | 774 |
| BmiI | GGNNCC | 1 cut(s) | 641 |
| BmrI | ACTGGG | 1 cut(s) | 358 |
| BmsI | GCATC | 1 cut(s) | 900 |
| BmuI | ACTGGG | 1 cut(s) | 358 |
| BpiI | GAAGAC | 1 cut(s) | 117 |
| BpmI | CTGGAG | 1 cut(s) | 993 |
| Bpu14I | TTCGAA | 1 cut(s) | 25 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 164, 480, 612 |
| Bse1I | ACTGG | 1 cut(s) | 353 |
| Bse3DI | GCAATG | 1 cut(s) | 430 |
| BseGI | GGATG | 2 cut(s) | 384, 573 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 164, 480, 612 |
| BseMI | GCAATG | 1 cut(s) | 430 |
| BseMII | CTCAG | 2 cut(s) | 48, 448 |
| BseNI | ACTGG | 1 cut(s) | 353 |
| BseRI | GAGGAG | 1 cut(s) | 992 |
| Bsh1285I | CGRYCG | 1 cut(s) | 500 |
| BshFI | GGCC | 2 cut(s) | 40, 157 |
| BsiEI | CGRYCG | 1 cut(s) | 500 |
| BsiHKAI | GWGCWC | 2 cut(s) | 172, 264 |
| BslFI | GGGAC | 1 cut(s) | 677 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 164, 480, 612 |
| BsmAI | GTCTC | 1 cut(s) | 831 |
| BsmFI | GGGAC | 1 cut(s) | 677 |
| BsnI | GGCC | 2 cut(s) | 40, 157 |
| Bsp119I | TTCGAA | 1 cut(s) | 25 |
| Bsp1286I | GDGCHC | 2 cut(s) | 172, 264 |
| Bsp143I | GATC | 6 cut(s) | 304, 497, 570, 639, 774, 799 |
| BspACI | CCGC | 4 cut(s) | 80, 298, 459, 930 |
| BspANI | GGCC | 2 cut(s) | 40, 157 |
| BspCNI | CTCAG | 2 cut(s) | 49, 447 |
| BspLI | GGNNCC | 1 cut(s) | 641 |
| BspPI | GGATC | 4 cut(s) | 312, 634, 647, 794 |
| BspT104I | TTCGAA | 1 cut(s) | 25 |
| BsrDI | GCAATG | 1 cut(s) | 430 |
| BsrI | ACTGG | 1 cut(s) | 353 |
| BssMI | GATC | 6 cut(s) | 304, 497, 570, 639, 774, 799 |
| BssSI | CACGAG | 1 cut(s) | 138 |
| Bst2BI | CACGAG | 1 cut(s) | 138 |
| Bst4CI | ACNGT | 5 cut(s) | 148, 443, 512, 845, 904 |
| BstBI | TTCGAA | 1 cut(s) | 25 |
| BstC8I | GCNNGC | 2 cut(s) | 159, 969 |
| BstDEI | CTNAG | 2 cut(s) | 57, 434 |
| BstF5I | GGATG | 2 cut(s) | 384, 573 |
| BstKTI | GATC | 6 cut(s) | 307, 500, 573, 642, 777, 802 |
| BstMAI | GTCTC | 1 cut(s) | 831 |
| BstMBI | GATC | 6 cut(s) | 304, 497, 570, 639, 774, 799 |
| BstMCI | CGRYCG | 1 cut(s) | 500 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 77, 167 |
| BstNSI | RCATGY | 1 cut(s) | 967 |
| BstSFI | CTRYAG | 1 cut(s) | 841 |
| BstV2I | GAAGAC | 1 cut(s) | 117 |
| BstX2I | RGATCY | 2 cut(s) | 639, 774 |
| BstYI | RGATCY | 2 cut(s) | 639, 774 |
| BsuI | GTATCC | 1 cut(s) | 953 |
| BsuRI | GGCC | 2 cut(s) | 40, 157 |
| BtsCI | GGATG | 2 cut(s) | 384, 573 |
| BtsIMutI | CAGTG | 5 cut(s) | 144, 448, 517, 850, 909 |
| Cac8I | GCNNGC | 2 cut(s) | 159, 969 |
| CseI | GACGC | 1 cut(s) | 208 |
| Csp6I | GTAC | 1 cut(s) | 520 |
| CviAII | CATG | 3 cut(s) | 52, 173, 964 |
| CviQI | GTAC | 1 cut(s) | 520 |
| DdeI | CTNAG | 2 cut(s) | 57, 434 |
| DpnI | GATC | 6 cut(s) | 306, 499, 572, 641, 776, 801 |
| DpnII | GATC | 6 cut(s) | 304, 497, 570, 639, 774, 799 |
| Eco147I | AGGCCT | 2 cut(s) | 40, 157 |
| Eco57I | CTGAAG | 2 cut(s) | 63, 93 |
| EcoRI | GAATTC | 1 cut(s) | 239 |
| FaeI | CATG | 3 cut(s) | 55, 176, 967 |
| FaqI | GGGAC | 1 cut(s) | 677 |
| FatI | CATG | 3 cut(s) | 51, 172, 963 |
| FbaI | TGATCA | 1 cut(s) | 570 |
| FokI | GGATG | 2 cut(s) | 371, 580 |
| FspBI | CTAG | 3 cut(s) | 36, 549, 555 |
| GsuI | CTGGAG | 1 cut(s) | 993 |
| HaeIII | GGCC | 2 cut(s) | 40, 157 |
| HgaI | GACGC | 1 cut(s) | 208 |
| Hin1II | CATG | 3 cut(s) | 55, 176, 967 |
| HinfI | GANTC | 3 cut(s) | 126, 294, 371 |
| HphI | GGTGA | 1 cut(s) | 881 |
| Hpy166II | GTNNAC | 4 cut(s) | 151, 187, 520, 705 |
| Hpy188I | TCNGA | 3 cut(s) | 412, 497, 943 |
| Hpy188III | TCNNGA | 3 cut(s) | 140, 274, 788 |
| Hpy8I | GTNNAC | 4 cut(s) | 151, 187, 520, 705 |
| Hpy99I | CGWCG | 1 cut(s) | 995 |
| HpyAV | CCTTC | 3 cut(s) | 38, 233, 669 |
| HpyCH4III | ACNGT | 5 cut(s) | 148, 443, 512, 845, 904 |
| HpyCH4V | TGCA | 1 cut(s) | 51 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 77, 167 |
| HpyF3I | CTNAG | 2 cut(s) | 57, 434 |
| Hsp92II | CATG | 3 cut(s) | 55, 176, 967 |
| Ksp22I | TGATCA | 1 cut(s) | 570 |
| Kzo9I | GATC | 6 cut(s) | 304, 497, 570, 639, 774, 799 |
| LmnI | GCTCC | 1 cut(s) | 616 |
| LweI | GCATC | 1 cut(s) | 900 |
| MaeI | CTAG | 3 cut(s) | 36, 549, 555 |
| MaeIII | GTNAC | 3 cut(s) | 140, 437, 868 |
| MalI | GATC | 6 cut(s) | 306, 499, 572, 641, 776, 801 |
| MboI | GATC | 6 cut(s) | 304, 497, 570, 639, 774, 799 |
| MboII | GAAGA | 6 cut(s) | 86, 122, 769, 784, 872, 962 |
| MflI | RGATCY | 2 cut(s) | 639, 774 |
| MhlI | GDGCHC | 2 cut(s) | 172, 264 |
| MluCI | AATT | 8 cut(s) | 61, 86, 239, 393, 600, 645, 882, 953 |
| MnlI | CCTC | 6 cut(s) | 172, 847, 940, 970, 973, 988 |
| MroXI | GAANNNNTTC | 1 cut(s) | 776 |
| MseI | TTAA | 3 cut(s) | 651, 738, 926 |
| MslI | CAYNNNNRTG | 3 cut(s) | 738, 749, 902 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 77, 167 |
| NdeII | GATC | 6 cut(s) | 304, 497, 570, 639, 774, 799 |
| NlaIII | CATG | 3 cut(s) | 55, 176, 967 |
| NlaIV | GGNNCC | 1 cut(s) | 641 |
| NmeAIII | GCCGAG | 1 cut(s) | 444 |
| NmuCI | GTSAC | 1 cut(s) | 140 |
| NspI | RCATGY | 1 cut(s) | 967 |
| NspV | TTCGAA | 1 cut(s) | 25 |
| OliI | CACNNNNGTG | 1 cut(s) | 749 |
| PceI | AGGCCT | 2 cut(s) | 40, 157 |
| PdmI | GAANNNNTTC | 1 cut(s) | 776 |
| PfeI | GAWTC | 3 cut(s) | 126, 294, 371 |
| Ple19I | CGATCG | 1 cut(s) | 500 |
| PspN4I | GGNNCC | 1 cut(s) | 641 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 454, 486 |
| PsuI | RGATCY | 2 cut(s) | 639, 774 |
| PvuI | CGATCG | 1 cut(s) | 500 |
| RsaI | GTAC | 1 cut(s) | 521 |
| RsaNI | GTAC | 1 cut(s) | 520 |
| RseI | CAYNNNNRTG | 3 cut(s) | 738, 749, 902 |
| SaqAI | TTAA | 3 cut(s) | 651, 738, 926 |
| Sau3AI | GATC | 6 cut(s) | 304, 497, 570, 639, 774, 799 |
| SduI | GDGCHC | 2 cut(s) | 172, 264 |
| SfaNI | GCATC | 1 cut(s) | 900 |
| SfcI | CTRYAG | 1 cut(s) | 841 |
| SfuI | TTCGAA | 1 cut(s) | 25 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 738, 749, 902 |
| Sse9I | AATT | 8 cut(s) | 61, 86, 239, 393, 600, 645, 882, 953 |
| SseBI | AGGCCT | 2 cut(s) | 40, 157 |
| SsiI | CCGC | 4 cut(s) | 80, 298, 459, 930 |
| SspMI | CTAG | 3 cut(s) | 36, 549, 555 |
| StuI | AGGCCT | 2 cut(s) | 40, 157 |
| TaaI | ACNGT | 5 cut(s) | 148, 443, 512, 845, 904 |
| TaqI | TCGA | 4 cut(s) | 25, 31, 500, 993 |
| TasI | AATT | 8 cut(s) | 61, 86, 239, 393, 600, 645, 882, 953 |
| TatI | WGTACW | 1 cut(s) | 519 |
| TfiI | GAWTC | 3 cut(s) | 126, 294, 371 |
| Tru1I | TTAA | 3 cut(s) | 651, 738, 926 |
| Tru9I | TTAA | 3 cut(s) | 651, 738, 926 |
| TscAI | CASTG | 5 cut(s) | 151, 448, 517, 850, 909 |
| TseFI | GTSAC | 1 cut(s) | 140 |
| Tsp45I | GTSAC | 1 cut(s) | 140 |
| TspDTI | ATGAA | 4 cut(s) | 17, 232, 252, 441 |
| TspGWI | ACGGA | 1 cut(s) | 335 |
| TspRI | CASTG | 5 cut(s) | 151, 448, 517, 850, 909 |
| XapI | RAATTY | 2 cut(s) | 86, 239 |
| XceI | RCATGY | 1 cut(s) | 967 |
| XmnI | GAANNNNTTC | 1 cut(s) | 776 |
| XspI | CTAG | 3 cut(s) | 36, 549, 555 |