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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 422 |
| AclWI | GGATC | 1 cut(s) | 806 |
| AcsI | RAATTY | 4 cut(s) | 86, 126, 621, 727 |
| AcuI | CTGAAG | 2 cut(s) | 93, 564 |
| AfaI | GTAC | 1 cut(s) | 296 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 164, 847 |
| AgsI | TTSAA | 6 cut(s) | 86, 202, 277, 454, 687, 733 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 124, 156 |
| AleI | CACNNNNGTG | 1 cut(s) | 722 |
| AluBI | AGCT | 5 cut(s) | 80, 284, 548, 631, 880 |
| AluI | AGCT | 5 cut(s) | 80, 284, 548, 631, 880 |
| Alw26I | GTCTC | 3 cut(s) | 181, 498, 971 |
| AlwI | GGATC | 1 cut(s) | 806 |
| Ama87I | CYCGRG | 1 cut(s) | 41 |
| AoxI | GGCC | 1 cut(s) | 742 |
| ApeKI | GCWGC | 1 cut(s) | 652 |
| ApoI | RAATTY | 4 cut(s) | 86, 126, 621, 727 |
| AspA2I | CCTAGG | 1 cut(s) | 815 |
| AspS9I | GGNCC | 1 cut(s) | 428 |
| AsuHPI | GGTGA | 4 cut(s) | 364, 622, 709, 893 |
| AsuII | TTCGAA | 1 cut(s) | 143 |
| AvaI | CYCGRG | 1 cut(s) | 41 |
| AvaII | GGWCC | 1 cut(s) | 428 |
| AvrII | CCTAGG | 1 cut(s) | 815 |
| BbvI | GCAGC | 1 cut(s) | 639 |
| BccI | CCATC | 3 cut(s) | 408, 419, 464 |
| BclI | TGATCA | 2 cut(s) | 382, 898 |
| BcoDI | GTCTC | 3 cut(s) | 181, 498, 971 |
| BfaI | CTAG | 4 cut(s) | 536, 561, 567, 816 |
| BfmI | CTRYAG | 2 cut(s) | 582, 807 |
| BisI | GCNGC | 1 cut(s) | 653 |
| BlnI | CCTAGG | 1 cut(s) | 815 |
| BlsI | GCNGC | 1 cut(s) | 654 |
| Bme18I | GGWCC | 1 cut(s) | 428 |
| BmeT110I | CYCGRG | 1 cut(s) | 41 |
| BmgT120I | GGNCC | 1 cut(s) | 428 |
| Bpu14I | TTCGAA | 1 cut(s) | 143 |
| BpuEI | CTTGAG | 1 cut(s) | 338 |
| BsaAI | YACGTR | 1 cut(s) | 748 |
| BsaBI | GATNNNNATC | 1 cut(s) | 576 |
| BsaJI | CCNNGG | 3 cut(s) | 42, 709, 815 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 164, 847 |
| Bse1I | ACTGG | 2 cut(s) | 381, 478 |
| Bse3DI | GCAATG | 1 cut(s) | 66 |
| Bse8I | GATNNNNATC | 1 cut(s) | 576 |
| BseDI | CCNNGG | 3 cut(s) | 42, 709, 815 |
| BseGI | GGATG | 3 cut(s) | 385, 430, 709 |
| BseJI | GATNNNNATC | 1 cut(s) | 576 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 164, 847 |
| BseMI | GCAATG | 1 cut(s) | 66 |
| BseMII | CTCAG | 1 cut(s) | 281 |
| BseNI | ACTGG | 2 cut(s) | 381, 478 |
| BseRI | GAGGAG | 1 cut(s) | 169 |
| BseXI | GCAGC | 1 cut(s) | 639 |
| BshFI | GGCC | 1 cut(s) | 744 |
| BsiHKCI | CYCGRG | 1 cut(s) | 41 |
| BslFI | GGGAC | 3 cut(s) | 24, 824, 899 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 164, 847 |
| BsmAI | GTCTC | 3 cut(s) | 181, 498, 971 |
| BsmFI | GGGAC | 3 cut(s) | 24, 824, 899 |
| BsmI | GAATGC | 1 cut(s) | 927 |
| BsnI | GGCC | 1 cut(s) | 744 |
| BsoBI | CYCGRG | 1 cut(s) | 41 |
| Bsp119I | TTCGAA | 1 cut(s) | 143 |
| Bsp143I | GATC | 4 cut(s) | 382, 811, 898, 965 |
| BspACI | CCGC | 1 cut(s) | 422 |
| BspANI | GGCC | 1 cut(s) | 744 |
| BspCNI | CTCAG | 1 cut(s) | 282 |
| BspHI | TCATGA | 3 cut(s) | 436, 868, 991 |
| BspPI | GGATC | 1 cut(s) | 806 |
| BspT104I | TTCGAA | 1 cut(s) | 143 |
| BsrDI | GCAATG | 1 cut(s) | 66 |
| BsrI | ACTGG | 2 cut(s) | 381, 478 |
| BssECI | CCNNGG | 3 cut(s) | 42, 709, 815 |
| BssMI | GATC | 4 cut(s) | 382, 811, 898, 965 |
| BssT1I | CCWWGG | 2 cut(s) | 709, 815 |
| Bst4CI | ACNGT | 4 cut(s) | 335, 458, 956, 982 |
| BstBAI | YACGTR | 1 cut(s) | 748 |
| BstBI | TTCGAA | 1 cut(s) | 143 |
| BstC8I | GCNNGC | 2 cut(s) | 155, 391 |
| BstDEI | CTNAG | 4 cut(s) | 290, 642, 721, 833 |
| BstF5I | GGATG | 3 cut(s) | 385, 430, 709 |
| BstKTI | GATC | 4 cut(s) | 385, 814, 901, 968 |
| BstMAI | GTCTC | 3 cut(s) | 181, 498, 971 |
| BstMBI | GATC | 4 cut(s) | 382, 811, 898, 965 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 77 |
| BstSFI | CTRYAG | 2 cut(s) | 582, 807 |
| BstV1I | GCAGC | 1 cut(s) | 639 |
| BstX2I | RGATCY | 1 cut(s) | 811 |
| BstYI | RGATCY | 1 cut(s) | 811 |
| BsuRI | GGCC | 1 cut(s) | 744 |
| BtsCI | GGATG | 3 cut(s) | 385, 430, 709 |
| BtsI | GCAGTG | 1 cut(s) | 199 |
| BtsIMutI | CAGTG | 1 cut(s) | 199 |
| Cac8I | GCNNGC | 2 cut(s) | 155, 391 |
| CciI | TCATGA | 3 cut(s) | 436, 868, 991 |
| Cfr13I | GGNCC | 1 cut(s) | 428 |
| Csp6I | GTAC | 1 cut(s) | 295 |
| CviAII | CATG | 4 cut(s) | 386, 437, 869, 992 |
| CviQI | GTAC | 1 cut(s) | 295 |
| DdeI | CTNAG | 4 cut(s) | 290, 642, 721, 833 |
| DpnI | GATC | 4 cut(s) | 384, 813, 900, 967 |
| DpnII | GATC | 4 cut(s) | 382, 811, 898, 965 |
| Eco130I | CCWWGG | 2 cut(s) | 709, 815 |
| Eco47I | GGWCC | 1 cut(s) | 428 |
| Eco57I | CTGAAG | 2 cut(s) | 93, 564 |
| Eco88I | CYCGRG | 1 cut(s) | 41 |
| EcoRI | GAATTC | 1 cut(s) | 126 |
| EcoT14I | CCWWGG | 2 cut(s) | 709, 815 |
| ErhI | CCWWGG | 2 cut(s) | 709, 815 |
| FaeI | CATG | 4 cut(s) | 389, 440, 872, 995 |
| FaqI | GGGAC | 3 cut(s) | 24, 824, 899 |
| FatI | CATG | 4 cut(s) | 385, 436, 868, 991 |
| FauNDI | CATATG | 1 cut(s) | 264 |
| FbaI | TGATCA | 2 cut(s) | 382, 898 |
| Fnu4HI | GCNGC | 1 cut(s) | 653 |
| FokI | GGATG | 3 cut(s) | 392, 437, 716 |
| Fsp4HI | GCNGC | 1 cut(s) | 653 |
| FspBI | CTAG | 4 cut(s) | 536, 561, 567, 816 |
| GluI | GCNGC | 1 cut(s) | 653 |
| HaeIII | GGCC | 1 cut(s) | 744 |
| Hin1II | CATG | 4 cut(s) | 389, 440, 872, 995 |
| HinfI | GANTC | 2 cut(s) | 474, 837 |
| HphI | GGTGA | 4 cut(s) | 364, 622, 709, 893 |
| Hpy188I | TCNGA | 7 cut(s) | 112, 245, 291, 403, 519, 965, 970 |
| Hpy188III | TCNNGA | 6 cut(s) | 41, 437, 497, 536, 869, 992 |
| HpyAV | CCTTC | 2 cut(s) | 139, 271 |
| HpyCH4III | ACNGT | 4 cut(s) | 335, 458, 956, 982 |
| HpyCH4IV | ACGT | 1 cut(s) | 747 |
| HpyCH4V | TGCA | 5 cut(s) | 12, 153, 344, 389, 799 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 77 |
| HpyF3I | CTNAG | 4 cut(s) | 290, 642, 721, 833 |
| HpySE526I | ACGT | 1 cut(s) | 747 |
| Hsp92II | CATG | 4 cut(s) | 389, 440, 872, 995 |
| Ksp22I | TGATCA | 2 cut(s) | 382, 898 |
| Kzo9I | GATC | 4 cut(s) | 382, 811, 898, 965 |
| LmnI | GCTCC | 2 cut(s) | 281, 628 |
| LpnPI | CCDG | 5 cut(s) | 108, 150, 362, 491, 594 |
| Lsp1109I | GCAGC | 1 cut(s) | 639 |
| MaeI | CTAG | 4 cut(s) | 536, 561, 567, 816 |
| MaeII | ACGT | 1 cut(s) | 747 |
| MaeIII | GTNAC | 2 cut(s) | 458, 956 |
| MalI | GATC | 4 cut(s) | 384, 813, 900, 967 |
| MboI | GATC | 4 cut(s) | 382, 811, 898, 965 |
| MboII | GAAGA | 2 cut(s) | 86, 367 |
| MflI | RGATCY | 1 cut(s) | 811 |
| MluCI | AATT | 7 cut(s) | 61, 86, 126, 465, 621, 634, 727 |
| MlyI | GAGTC | 2 cut(s) | 483, 846 |
| MnlI | CCTC | 8 cut(s) | 37, 190, 285, 313, 532, 668, 852, 937 |
| MseI | TTAA | 1 cut(s) | 663 |
| MslI | CAYNNNNRTG | 4 cut(s) | 216, 722, 750, 873 |
| Mva1269I | GAATGC | 1 cut(s) | 927 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 77 |
| NdeI | CATATG | 1 cut(s) | 264 |
| NdeII | GATC | 4 cut(s) | 382, 811, 898, 965 |
| NlaIII | CATG | 4 cut(s) | 389, 440, 872, 995 |
| NspV | TTCGAA | 1 cut(s) | 143 |
| OliI | CACNNNNGTG | 1 cut(s) | 722 |
| PagI | TCATGA | 3 cut(s) | 436, 868, 991 |
| PctI | GAATGC | 1 cut(s) | 927 |
| PflFI | GACNNNGTC | 1 cut(s) | 432 |
| PkrI | GCNGC | 1 cut(s) | 654 |
| PleI | GAGTC | 2 cut(s) | 482, 845 |
| PpsI | GAGTC | 2 cut(s) | 482, 845 |
| Ppu21I | YACGTR | 1 cut(s) | 748 |
| PspPI | GGNCC | 1 cut(s) | 428 |
| PsuI | RGATCY | 1 cut(s) | 811 |
| PsyI | GACNNNGTC | 1 cut(s) | 432 |
| RsaI | GTAC | 1 cut(s) | 296 |
| RsaNI | GTAC | 1 cut(s) | 295 |
| RseI | CAYNNNNRTG | 4 cut(s) | 216, 722, 750, 873 |
| SaqAI | TTAA | 1 cut(s) | 663 |
| SatI | GCNGC | 1 cut(s) | 653 |
| Sau3AI | GATC | 4 cut(s) | 382, 811, 898, 965 |
| Sau96I | GGNCC | 1 cut(s) | 428 |
| SchI | GAGTC | 2 cut(s) | 483, 846 |
| SfcI | CTRYAG | 2 cut(s) | 582, 807 |
| SfuI | TTCGAA | 1 cut(s) | 143 |
| SinI | GGWCC | 1 cut(s) | 428 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 216, 722, 750, 873 |
| SmlI | CTYRAG | 1 cut(s) | 317 |
| SmoI | CTYRAG | 1 cut(s) | 317 |
| Sse9I | AATT | 7 cut(s) | 61, 86, 126, 465, 621, 634, 727 |
| SsiI | CCGC | 1 cut(s) | 422 |
| SspI | AATATT | 1 cut(s) | 272 |
| SspMI | CTAG | 4 cut(s) | 536, 561, 567, 816 |
| StyI | CCWWGG | 2 cut(s) | 709, 815 |
| TaaI | ACNGT | 4 cut(s) | 335, 458, 956, 982 |
| TaiI | ACGT | 1 cut(s) | 750 |
| TaqI | TCGA | 3 cut(s) | 143, 258, 508 |
| TasI | AATT | 7 cut(s) | 61, 86, 126, 465, 621, 634, 727 |
| Tru1I | TTAA | 1 cut(s) | 663 |
| Tru9I | TTAA | 1 cut(s) | 663 |
| TscAI | CASTG | 1 cut(s) | 199 |
| TseI | GCWGC | 1 cut(s) | 652 |
| TspDTI | ATGAA | 4 cut(s) | 17, 327, 453, 633 |
| TspGWI | ACGGA | 1 cut(s) | 14 |
| TspRI | CASTG | 1 cut(s) | 199 |
| Tth111I | GACNNNGTC | 1 cut(s) | 432 |
| VpaK11BI | GGWCC | 1 cut(s) | 428 |
| XapI | RAATTY | 4 cut(s) | 86, 126, 621, 727 |
| XbaI | TCTAGA | 1 cut(s) | 535 |
| XmaJI | CCTAGG | 1 cut(s) | 815 |
| XspI | CTAG | 4 cut(s) | 536, 561, 567, 816 |