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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 633 |
| AfaI | GTAC | 1 cut(s) | 391 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 275, 560, 634, 635 |
| AflII | CTTAAG | 1 cut(s) | 53 |
| AgsI | TTSAA | 4 cut(s) | 166, 436, 587, 694 |
| AjnI | CCWGG | 1 cut(s) | 382 |
| AluBI | AGCT | 2 cut(s) | 509, 704 |
| AluI | AGCT | 2 cut(s) | 509, 704 |
| Alw21I | GWGCWC | 1 cut(s) | 303 |
| Alw26I | GTCTC | 2 cut(s) | 563, 711 |
| ApeKI | GCWGC | 1 cut(s) | 221 |
| AspS9I | GGNCC | 1 cut(s) | 638 |
| AvaII | GGWCC | 1 cut(s) | 638 |
| BanII | GRGCYC | 1 cut(s) | 83 |
| BbsI | GAAGAC | 1 cut(s) | 478 |
| Bbv12I | GWGCWC | 1 cut(s) | 303 |
| BbvI | GCAGC | 1 cut(s) | 208 |
| BccI | CCATC | 1 cut(s) | 356 |
| BciT130I | CCWGG | 1 cut(s) | 384 |
| BciVI | GTATCC | 1 cut(s) | 672 |
| BcoDI | GTCTC | 2 cut(s) | 563, 711 |
| BfaI | CTAG | 4 cut(s) | 75, 549, 705, 735 |
| BfmI | CTRYAG | 1 cut(s) | 699 |
| BfrI | CTTAAG | 1 cut(s) | 53 |
| BfuI | GTATCC | 1 cut(s) | 672 |
| BisI | GCNGC | 1 cut(s) | 222 |
| BlsI | GCNGC | 1 cut(s) | 223 |
| Bme1390I | CCNGG | 1 cut(s) | 384 |
| Bme18I | GGWCC | 1 cut(s) | 638 |
| BmgT120I | GGNCC | 1 cut(s) | 638 |
| BmiI | GGNNCC | 2 cut(s) | 80, 639 |
| BmrFI | CCNGG | 1 cut(s) | 384 |
| BmsI | GCATC | 1 cut(s) | 532 |
| BpiI | GAAGAC | 1 cut(s) | 478 |
| BpmI | CTGGAG | 1 cut(s) | 627 |
| BsaBI | GATNNNNATC | 1 cut(s) | 312 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 275, 560, 634, 635 |
| Bse1I | ACTGG | 1 cut(s) | 46 |
| Bse8I | GATNNNNATC | 1 cut(s) | 312 |
| BseBI | CCWGG | 1 cut(s) | 384 |
| BseGI | GGATG | 1 cut(s) | 367 |
| BseJI | GATNNNNATC | 1 cut(s) | 312 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 275, 560, 634, 635 |
| BseMII | CTCAG | 1 cut(s) | 316 |
| BseNI | ACTGG | 1 cut(s) | 46 |
| BseRI | GAGGAG | 1 cut(s) | 581 |
| BseXI | GCAGC | 1 cut(s) | 208 |
| BsiHKAI | GWGCWC | 1 cut(s) | 303 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 275, 560, 634, 635 |
| BsmAI | GTCTC | 2 cut(s) | 563, 711 |
| Bsp1286I | GDGCHC | 2 cut(s) | 83, 303 |
| Bsp143I | GATC | 3 cut(s) | 17, 151, 313 |
| BspCNI | CTCAG | 1 cut(s) | 315 |
| BspLI | GGNNCC | 2 cut(s) | 80, 639 |
| BspTI | CTTAAG | 1 cut(s) | 53 |
| BsrI | ACTGG | 1 cut(s) | 46 |
| BssMI | GATC | 3 cut(s) | 17, 151, 313 |
| Bst2UI | CCWGG | 1 cut(s) | 384 |
| Bst4CI | ACNGT | 1 cut(s) | 141 |
| BstAFI | CTTAAG | 1 cut(s) | 53 |
| BstC8I | GCNNGC | 1 cut(s) | 507 |
| BstDEI | CTNAG | 2 cut(s) | 34, 302 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 273 |
| BstF5I | GGATG | 1 cut(s) | 367 |
| BstKTI | GATC | 3 cut(s) | 20, 154, 316 |
| BstMAI | GTCTC | 2 cut(s) | 563, 711 |
| BstMBI | GATC | 3 cut(s) | 17, 151, 313 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 111 |
| BstNI | CCWGG | 1 cut(s) | 384 |
| BstSCI | CCNGG | 1 cut(s) | 382 |
| BstSFI | CTRYAG | 1 cut(s) | 699 |
| BstV1I | GCAGC | 1 cut(s) | 208 |
| BstV2I | GAAGAC | 1 cut(s) | 478 |
| BsuI | GTATCC | 1 cut(s) | 672 |
| BtsCI | GGATG | 1 cut(s) | 367 |
| BtsIMutI | CAGTG | 2 cut(s) | 310, 684 |
| Cac8I | GCNNGC | 1 cut(s) | 507 |
| Cfr13I | GGNCC | 1 cut(s) | 638 |
| Csp6I | GTAC | 1 cut(s) | 390 |
| CviAII | CATG | 1 cut(s) | 155 |
| CviJI | RGCY | 7 cut(s) | 8, 81, 373, 509, 697, 704, 734 |
| CviKI_1 | RGCY | 7 cut(s) | 8, 81, 373, 509, 697, 704, 734 |
| CviQI | GTAC | 1 cut(s) | 390 |
| DdeI | CTNAG | 2 cut(s) | 34, 302 |
| DpnI | GATC | 3 cut(s) | 19, 153, 315 |
| DpnII | GATC | 3 cut(s) | 17, 151, 313 |
| Eco24I | GRGCYC | 1 cut(s) | 83 |
| Eco47I | GGWCC | 1 cut(s) | 638 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 273 |
| EcoO109I | RGGNCCY | 1 cut(s) | 638 |
| EcoRII | CCWGG | 1 cut(s) | 382 |
| EcoT38I | GRGCYC | 1 cut(s) | 83 |
| FaeI | CATG | 1 cut(s) | 158 |
| FatI | CATG | 1 cut(s) | 154 |
| Fnu4HI | GCNGC | 1 cut(s) | 222 |
| FokI | GGATG | 1 cut(s) | 374 |
| FriOI | GRGCYC | 1 cut(s) | 83 |
| Fsp4HI | GCNGC | 1 cut(s) | 222 |
| FspBI | CTAG | 4 cut(s) | 75, 549, 705, 735 |
| GluI | GCNGC | 1 cut(s) | 222 |
| GsuI | CTGGAG | 1 cut(s) | 627 |
| Hin1II | CATG | 1 cut(s) | 158 |
| HincII | GTYRAC | 1 cut(s) | 399 |
| HindII | GTYRAC | 1 cut(s) | 399 |
| HindIII | AAGCTT | 1 cut(s) | 507 |
| HinfI | GANTC | 3 cut(s) | 265, 332, 466 |
| Hpy166II | GTNNAC | 1 cut(s) | 399 |
| Hpy188I | TCNGA | 1 cut(s) | 250 |
| Hpy188III | TCNNGA | 2 cut(s) | 269, 644 |
| Hpy8I | GTNNAC | 1 cut(s) | 399 |
| HpyCH4III | ACNGT | 1 cut(s) | 141 |
| HpyCH4V | TGCA | 4 cut(s) | 62, 178, 349, 578 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 111 |
| HpyF3I | CTNAG | 2 cut(s) | 34, 302 |
| Hsp92II | CATG | 1 cut(s) | 158 |
| Kzo9I | GATC | 3 cut(s) | 17, 151, 313 |
| LmnI | GCTCC | 3 cut(s) | 78, 550, 625 |
| LpnPI | CCDG | 9 cut(s) | 59, 238, 282, 342, 369, 396, 546, 636, 657 |
| Lsp1109I | GCAGC | 1 cut(s) | 208 |
| LweI | GCATC | 1 cut(s) | 532 |
| MaeI | CTAG | 4 cut(s) | 75, 549, 705, 735 |
| MalI | GATC | 3 cut(s) | 19, 153, 315 |
| MboI | GATC | 3 cut(s) | 17, 151, 313 |
| MboII | GAAGA | 4 cut(s) | 299, 323, 457, 483 |
| MhlI | GDGCHC | 2 cut(s) | 83, 303 |
| MluCI | AATT | 2 cut(s) | 26, 449 |
| MlyI | GAGTC | 1 cut(s) | 326 |
| MmeI | TCCRAC | 2 cut(s) | 173, 719 |
| MnlI | CCTC | 7 cut(s) | 235, 272, 352, 384, 456, 559, 651 |
| MseI | TTAA | 5 cut(s) | 42, 54, 107, 147, 557 |
| MspCI | CTTAAG | 1 cut(s) | 53 |
| MspR9I | CCNGG | 1 cut(s) | 384 |
| MvaI | CCWGG | 1 cut(s) | 384 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 111 |
| NdeII | GATC | 3 cut(s) | 17, 151, 313 |
| NlaIII | CATG | 1 cut(s) | 158 |
| NlaIV | GGNNCC | 2 cut(s) | 80, 639 |
| PfeI | GAWTC | 2 cut(s) | 265, 466 |
| PkrI | GCNGC | 1 cut(s) | 223 |
| PleI | GAGTC | 1 cut(s) | 326 |
| PpsI | GAGTC | 1 cut(s) | 326 |
| PpuMI | RGGWCCY | 1 cut(s) | 638 |
| PsiI | TTATAA | 1 cut(s) | 633 |
| Psp5II | RGGWCCY | 1 cut(s) | 638 |
| Psp6I | CCWGG | 1 cut(s) | 382 |
| PspGI | CCWGG | 1 cut(s) | 382 |
| PspN4I | GGNNCC | 2 cut(s) | 80, 639 |
| PspPI | GGNCC | 1 cut(s) | 638 |
| PspPPI | RGGWCCY | 1 cut(s) | 638 |
| RsaI | GTAC | 1 cut(s) | 391 |
| RsaNI | GTAC | 1 cut(s) | 390 |
| SaqAI | TTAA | 5 cut(s) | 42, 54, 107, 147, 557 |
| SatI | GCNGC | 1 cut(s) | 222 |
| Sau3AI | GATC | 3 cut(s) | 17, 151, 313 |
| Sau96I | GGNCC | 1 cut(s) | 638 |
| SchI | GAGTC | 1 cut(s) | 326 |
| ScrFI | CCNGG | 1 cut(s) | 384 |
| SduI | GDGCHC | 2 cut(s) | 83, 303 |
| SetI | ASST | 7 cut(s) | 60, 97, 298, 427, 511, 592, 706 |
| SfaNI | GCATC | 1 cut(s) | 532 |
| SfcI | CTRYAG | 1 cut(s) | 699 |
| SinI | GGWCC | 1 cut(s) | 638 |
| SmlI | CTYRAG | 1 cut(s) | 53 |
| SmoI | CTYRAG | 1 cut(s) | 53 |
| Sse9I | AATT | 2 cut(s) | 26, 449 |
| SspMI | CTAG | 4 cut(s) | 75, 549, 705, 735 |
| StyD4I | CCNGG | 1 cut(s) | 382 |
| TaaI | ACNGT | 1 cut(s) | 141 |
| TaqI | TCGA | 5 cut(s) | 30, 335, 443, 469, 519 |
| TasI | AATT | 2 cut(s) | 26, 449 |
| TfiI | GAWTC | 2 cut(s) | 265, 466 |
| Tru1I | TTAA | 5 cut(s) | 42, 54, 107, 147, 557 |
| Tru9I | TTAA | 5 cut(s) | 42, 54, 107, 147, 557 |
| TscAI | CASTG | 2 cut(s) | 310, 691 |
| TseI | GCWGC | 1 cut(s) | 221 |
| TspDTI | ATGAA | 5 cut(s) | 17, 133, 300, 324, 422 |
| TspRI | CASTG | 2 cut(s) | 310, 691 |
| Vha464I | CTTAAG | 1 cut(s) | 53 |
| VpaK11BI | GGWCC | 1 cut(s) | 638 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 273 |
| XspI | CTAG | 4 cut(s) | 75, 549, 705, 735 |