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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 589 |
| AatII | GACGTC | 1 cut(s) | 1017 |
| Acc36I | ACCTGC | 1 cut(s) | 589 |
| Acc65I | GGTACC | 1 cut(s) | 103 |
| AccB1I | GGYRCC | 1 cut(s) | 103 |
| AciI | CCGC | 2 cut(s) | 862, 1231 |
| AclWI | GGATC | 2 cut(s) | 200, 979 |
| AcsI | RAATTY | 3 cut(s) | 237, 1038, 1187 |
| AcyI | GRCGYC | 1 cut(s) | 1014 |
| AfaI | GTAC | 4 cut(s) | 105, 285, 402, 979 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 560 |
| AgeI | ACCGGT | 2 cut(s) | 106, 818 |
| AgsI | TTSAA | 5 cut(s) | 344, 721, 838, 910, 1129 |
| AjnI | CCWGG | 1 cut(s) | 137 |
| AluBI | AGCT | 7 cut(s) | 331, 420, 581, 700, 832, 895, 1106 |
| AluI | AGCT | 7 cut(s) | 331, 420, 581, 700, 832, 895, 1106 |
| Alw26I | GTCTC | 3 cut(s) | 294, 380, 1005 |
| AlwI | GGATC | 2 cut(s) | 200, 979 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 485 |
| ApeKI | GCWGC | 5 cut(s) | 352, 518, 581, 782, 1106 |
| ApoI | RAATTY | 3 cut(s) | 237, 1038, 1187 |
| AsiGI | ACCGGT | 2 cut(s) | 106, 818 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 568, 655 |
| Asp718I | GGTACC | 1 cut(s) | 103 |
| AspLEI | GCGC | 1 cut(s) | 352 |
| AsuHPI | GGTGA | 4 cut(s) | 419, 613, 833, 1105 |
| BaeGI | GKGCMC | 1 cut(s) | 293 |
| BanI | GGYRCC | 1 cut(s) | 103 |
| BbvI | GCAGC | 5 cut(s) | 364, 530, 568, 769, 1093 |
| BccI | CCATC | 3 cut(s) | 385, 428, 841 |
| BceAI | ACGGC | 2 cut(s) | 73, 448 |
| BciT130I | CCWGG | 1 cut(s) | 139 |
| BciVI | GTATCC | 1 cut(s) | 57 |
| BclI | TGATCA | 3 cut(s) | 265, 702, 1095 |
| BcoDI | GTCTC | 3 cut(s) | 294, 380, 1005 |
| BfaI | CTAG | 4 cut(s) | 12, 332, 648, 1022 |
| BfmI | CTRYAG | 1 cut(s) | 495 |
| BfuAI | ACCTGC | 1 cut(s) | 589 |
| BfuI | GTATCC | 1 cut(s) | 57 |
| BglII | AGATCT | 1 cut(s) | 491 |
| BisI | GCNGC | 7 cut(s) | 353, 519, 582, 783, 862, 1107, 1232 |
| BlsI | GCNGC | 7 cut(s) | 354, 520, 583, 784, 863, 1108, 1233 |
| Bme1390I | CCNGG | 1 cut(s) | 139 |
| BmiI | GGNNCC | 2 cut(s) | 105, 924 |
| BmrFI | CCNGG | 1 cut(s) | 139 |
| BmsI | GCATC | 4 cut(s) | 491, 740, 873, 1048 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 404, 436 |
| BsaBI | GATNNNNATC | 2 cut(s) | 541, 989 |
| BsaHI | GRCGYC | 1 cut(s) | 1014 |
| BsaJI | CCNNGG | 3 cut(s) | 138, 307, 883 |
| BsaWI | WCCGGW | 4 cut(s) | 106, 818, 1000, 1195 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 560 |
| Bse118I | RCCGGY | 2 cut(s) | 106, 818 |
| Bse3DI | GCAATG | 1 cut(s) | 445 |
| Bse8I | GATNNNNATC | 2 cut(s) | 541, 989 |
| BseBI | CCWGG | 1 cut(s) | 139 |
| BseDI | CCNNGG | 3 cut(s) | 138, 307, 883 |
| BseGI | GGATG | 3 cut(s) | 852, 1063, 1204 |
| BseJI | GATNNNNATC | 2 cut(s) | 541, 989 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 560 |
| BseMI | GCAATG | 1 cut(s) | 445 |
| BseMII | CTCAG | 1 cut(s) | 705 |
| BseSI | GKGCMC | 1 cut(s) | 293 |
| BseXI | GCAGC | 5 cut(s) | 364, 530, 568, 769, 1093 |
| BsgI | GTGCAG | 1 cut(s) | 537 |
| BshNI | GGYRCC | 1 cut(s) | 103 |
| BshTI | ACCGGT | 2 cut(s) | 106, 818 |
| BsiSI | CCGG | 4 cut(s) | 107, 819, 1001, 1196 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 560 |
| BsmAI | GTCTC | 3 cut(s) | 294, 380, 1005 |
| BsmBI | CGTCTC | 1 cut(s) | 1005 |
| Bsp1286I | GDGCHC | 1 cut(s) | 293 |
| BspACI | CCGC | 2 cut(s) | 862, 1231 |
| BspCNI | CTCAG | 1 cut(s) | 706 |
| BspHI | TCATGA | 1 cut(s) | 705 |
| BspLI | GGNNCC | 2 cut(s) | 105, 924 |
| BspMI | ACCTGC | 1 cut(s) | 589 |
| BspPI | GGATC | 2 cut(s) | 200, 979 |
| BspQI | GCTCTTC | 2 cut(s) | 321, 405 |
| BspT107I | GGYRCC | 1 cut(s) | 103 |
| BsrDI | GCAATG | 1 cut(s) | 445 |
| BsrFI | RCCGGY | 2 cut(s) | 106, 818 |
| BssAI | RCCGGY | 2 cut(s) | 106, 818 |
| BssECI | CCNNGG | 3 cut(s) | 138, 307, 883 |
| BssNI | GRCGYC | 1 cut(s) | 1014 |
| BssT1I | CCWWGG | 1 cut(s) | 307 |
| Bst2UI | CCWGG | 1 cut(s) | 139 |
| Bst4CI | ACNGT | 3 cut(s) | 288, 531, 901 |
| Bst6I | CTCTTC | 2 cut(s) | 321, 405 |
| BstACI | GRCGYC | 1 cut(s) | 1014 |
| BstDEI | CTNAG | 3 cut(s) | 217, 503, 714 |
| BstF5I | GGATG | 3 cut(s) | 852, 1063, 1204 |
| BstHHI | GCGC | 1 cut(s) | 352 |
| BstMAI | GTCTC | 3 cut(s) | 294, 380, 1005 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 838 |
| BstNI | CCWGG | 1 cut(s) | 139 |
| BstNSI | RCATGY | 1 cut(s) | 230 |
| BstSCI | CCNGG | 1 cut(s) | 137 |
| BstSFI | CTRYAG | 1 cut(s) | 495 |
| BstSLI | GKGCMC | 1 cut(s) | 293 |
| BstV1I | GCAGC | 5 cut(s) | 364, 530, 568, 769, 1093 |
| BstX2I | RGATCY | 2 cut(s) | 491, 984 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 46, 314 |
| BstYI | RGATCY | 2 cut(s) | 491, 984 |
| BsuI | GTATCC | 1 cut(s) | 57 |
| BtgZI | GCGATG | 1 cut(s) | 536 |
| BtsCI | GGATG | 3 cut(s) | 852, 1063, 1204 |
| BtsIMutI | CAGTG | 2 cut(s) | 282, 293 |
| BveI | ACCTGC | 1 cut(s) | 589 |
| CaiI | CAGNNNCTG | 1 cut(s) | 485 |
| CciI | TCATGA | 1 cut(s) | 705 |
| CfoI | GCGC | 1 cut(s) | 352 |
| Cfr10I | RCCGGY | 2 cut(s) | 106, 818 |
| CseI | GACGC | 1 cut(s) | 662 |
| Csp6I | GTAC | 4 cut(s) | 104, 284, 401, 978 |
| CspAI | ACCGGT | 2 cut(s) | 106, 818 |
| CviAII | CATG | 3 cut(s) | 227, 706, 1165 |
| CviQI | GTAC | 4 cut(s) | 104, 284, 401, 978 |
| DdeI | CTNAG | 3 cut(s) | 217, 503, 714 |
| DraI | TTTAAA | 1 cut(s) | 201 |
| Eam1104I | CTCTTC | 2 cut(s) | 321, 405 |
| EarI | CTCTTC | 2 cut(s) | 321, 405 |
| Eco130I | CCWWGG | 1 cut(s) | 307 |
| EcoRII | CCWGG | 1 cut(s) | 137 |
| EcoT14I | CCWWGG | 1 cut(s) | 307 |
| EcoT22I | ATGCAT | 1 cut(s) | 1063 |
| ErhI | CCWWGG | 1 cut(s) | 307 |
| Esp3I | CGTCTC | 1 cut(s) | 1005 |
| FaeI | CATG | 3 cut(s) | 230, 709, 1168 |
| FatI | CATG | 3 cut(s) | 226, 705, 1164 |
| FbaI | TGATCA | 3 cut(s) | 265, 702, 1095 |
| Fnu4HI | GCNGC | 7 cut(s) | 353, 519, 582, 783, 862, 1107, 1232 |
| FokI | GGATG | 3 cut(s) | 859, 1070, 1211 |
| Fsp4HI | GCNGC | 7 cut(s) | 353, 519, 582, 783, 862, 1107, 1232 |
| FspBI | CTAG | 4 cut(s) | 12, 332, 648, 1022 |
| GlaI | GCGC | 1 cut(s) | 351 |
| GluI | GCNGC | 7 cut(s) | 353, 519, 582, 783, 862, 1107, 1232 |
| HapII | CCGG | 4 cut(s) | 107, 819, 1001, 1196 |
| HgaI | GACGC | 1 cut(s) | 662 |
| HhaI | GCGC | 1 cut(s) | 352 |
| Hin1I | GRCGYC | 1 cut(s) | 1014 |
| Hin1II | CATG | 3 cut(s) | 230, 709, 1168 |
| Hin6I | GCGC | 1 cut(s) | 350 |
| HinP1I | GCGC | 1 cut(s) | 350 |
| HinfI | GANTC | 3 cut(s) | 131, 604, 1046 |
| HpaII | CCGG | 4 cut(s) | 107, 819, 1001, 1196 |
| HphI | GGTGA | 4 cut(s) | 419, 613, 833, 1105 |
| Hpy166II | GTNNAC | 3 cut(s) | 49, 85, 468 |
| Hpy188I | TCNGA | 3 cut(s) | 574, 884, 1086 |
| Hpy188III | TCNNGA | 7 cut(s) | 385, 431, 534, 687, 706, 1022, 1129 |
| Hpy8I | GTNNAC | 3 cut(s) | 49, 85, 468 |
| Hpy99I | CGWCG | 1 cut(s) | 1019 |
| HpyAV | CCTTC | 1 cut(s) | 437 |
| HpyCH4III | ACNGT | 3 cut(s) | 288, 531, 901 |
| HpyCH4IV | ACGT | 1 cut(s) | 1014 |
| HpyCH4V | TGCA | 7 cut(s) | 4, 17, 488, 518, 952, 1061, 1109 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 838 |
| HpyF3I | CTNAG | 3 cut(s) | 217, 503, 714 |
| HpySE526I | ACGT | 1 cut(s) | 1014 |
| Hsp92I | GRCGYC | 1 cut(s) | 1014 |
| Hsp92II | CATG | 3 cut(s) | 230, 709, 1168 |
| HspAI | GCGC | 1 cut(s) | 350 |
| KpnI | GGTACC | 1 cut(s) | 107 |
| Ksp22I | TGATCA | 3 cut(s) | 265, 702, 1095 |
| LguI | GCTCTTC | 2 cut(s) | 321, 405 |
| LmnI | GCTCC | 2 cut(s) | 425, 728 |
| Lsp1109I | GCAGC | 5 cut(s) | 364, 530, 568, 769, 1093 |
| LweI | GCATC | 4 cut(s) | 491, 740, 873, 1048 |
| MaeI | CTAG | 4 cut(s) | 12, 332, 648, 1022 |
| MaeII | ACGT | 1 cut(s) | 1014 |
| MaeIII | GTNAC | 2 cut(s) | 601, 850 |
| MboII | GAAGA | 5 cut(s) | 338, 347, 422, 648, 733 |
| MflI | RGATCY | 2 cut(s) | 491, 984 |
| MhlI | GDGCHC | 1 cut(s) | 293 |
| MluCI | AATT | 7 cut(s) | 237, 824, 1038, 1136, 1144, 1187, 1237 |
| MlyI | GAGTC | 2 cut(s) | 140, 598 |
| MmeI | TCCRAC | 1 cut(s) | 1064 |
| MnlI | CCTC | 6 cut(s) | 73, 266, 595, 670, 836, 878 |
| Mph1103I | ATGCAT | 1 cut(s) | 1063 |
| MroXI | GAANNNNTTC | 2 cut(s) | 568, 655 |
| MseI | TTAA | 5 cut(s) | 147, 177, 200, 827, 1241 |
| MslI | CAYNNNNRTG | 2 cut(s) | 201, 965 |
| MspA1I | CMGCKG | 1 cut(s) | 1106 |
| MspI | CCGG | 4 cut(s) | 107, 819, 1001, 1196 |
| MspR9I | CCNGG | 1 cut(s) | 139 |
| MvaI | CCWGG | 1 cut(s) | 139 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 838 |
| NlaIII | CATG | 3 cut(s) | 230, 709, 1168 |
| NlaIV | GGNNCC | 2 cut(s) | 105, 924 |
| NmuCI | GTSAC | 1 cut(s) | 601 |
| NsiI | ATGCAT | 1 cut(s) | 1063 |
| NspI | RCATGY | 1 cut(s) | 230 |
| PagI | TCATGA | 1 cut(s) | 705 |
| PaqCI | CACCTGC | 1 cut(s) | 589 |
| PciSI | GCTCTTC | 2 cut(s) | 321, 405 |
| PdmI | GAANNNNTTC | 2 cut(s) | 568, 655 |
| PfeI | GAWTC | 1 cut(s) | 1046 |
| PinAI | ACCGGT | 2 cut(s) | 106, 818 |
| PkrI | GCNGC | 7 cut(s) | 354, 520, 583, 784, 863, 1108, 1233 |
| PleI | GAGTC | 2 cut(s) | 139, 598 |
| PpsI | GAGTC | 2 cut(s) | 139, 598 |
| Psp6I | CCWGG | 1 cut(s) | 137 |
| PspGI | CCWGG | 1 cut(s) | 137 |
| PspN4I | GGNNCC | 2 cut(s) | 105, 924 |
| PstNI | CAGNNNCTG | 1 cut(s) | 485 |
| PsuI | RGATCY | 2 cut(s) | 491, 984 |
| PvuII | CAGCTG | 1 cut(s) | 1106 |
| RsaI | GTAC | 4 cut(s) | 105, 285, 402, 979 |
| RsaNI | GTAC | 4 cut(s) | 104, 284, 401, 978 |
| RseI | CAYNNNNRTG | 2 cut(s) | 201, 965 |
| SapI | GCTCTTC | 2 cut(s) | 321, 405 |
| SaqAI | TTAA | 5 cut(s) | 147, 177, 200, 827, 1241 |
| SatI | GCNGC | 7 cut(s) | 353, 519, 582, 783, 862, 1107, 1232 |
| SchI | GAGTC | 2 cut(s) | 140, 598 |
| ScrFI | CCNGG | 1 cut(s) | 139 |
| SduI | GDGCHC | 1 cut(s) | 293 |
| SfaNI | GCATC | 4 cut(s) | 491, 740, 873, 1048 |
| SfcI | CTRYAG | 1 cut(s) | 495 |
| SmiI | ATTTAAAT | 1 cut(s) | 201 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 201, 965 |
| Sse9I | AATT | 7 cut(s) | 237, 824, 1038, 1136, 1144, 1187, 1237 |
| SsiI | CCGC | 2 cut(s) | 862, 1231 |
| SspMI | CTAG | 4 cut(s) | 12, 332, 648, 1022 |
| StyD4I | CCNGG | 1 cut(s) | 137 |
| StyI | CCWWGG | 1 cut(s) | 307 |
| SwaI | ATTTAAAT | 1 cut(s) | 201 |
| TaaI | ACNGT | 3 cut(s) | 288, 531, 901 |
| TaiI | ACGT | 1 cut(s) | 1017 |
| TaqI | TCGA | 3 cut(s) | 384, 430, 1017 |
| TasI | AATT | 7 cut(s) | 237, 824, 1038, 1136, 1144, 1187, 1237 |
| TatI | WGTACW | 2 cut(s) | 283, 400 |
| TauI | GCSGC | 2 cut(s) | 864, 1234 |
| TfiI | GAWTC | 1 cut(s) | 1046 |
| Tru1I | TTAA | 5 cut(s) | 147, 177, 200, 827, 1241 |
| Tru9I | TTAA | 5 cut(s) | 147, 177, 200, 827, 1241 |
| TscAI | CASTG | 2 cut(s) | 282, 293 |
| TseFI | GTSAC | 1 cut(s) | 601 |
| TseI | GCWGC | 5 cut(s) | 352, 518, 581, 782, 1106 |
| Tsp45I | GTSAC | 1 cut(s) | 601 |
| TspDTI | ATGAA | 9 cut(s) | 171, 339, 456, 539, 822, 960, 1041, 1181, 1185 |
| TspGWI | ACGGA | 1 cut(s) | 1070 |
| TspRI | CASTG | 2 cut(s) | 282, 293 |
| XapI | RAATTY | 3 cut(s) | 237, 1038, 1187 |
| XbaI | TCTAGA | 1 cut(s) | 1021 |
| XceI | RCATGY | 1 cut(s) | 230 |
| XmnI | GAANNNNTTC | 2 cut(s) | 568, 655 |
| XspI | CTAG | 4 cut(s) | 12, 332, 648, 1022 |
| ZraI | GACGTC | 1 cut(s) | 1015 |
| Zsp2I | ATGCAT | 1 cut(s) | 1063 |