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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 526 |
| AccB1I | GGYRCC | 1 cut(s) | 526 |
| AccI | GTMKAC | 1 cut(s) | 156 |
| AcuI | CTGAAG | 2 cut(s) | 48, 351 |
| AfaI | GTAC | 4 cut(s) | 206, 217, 528, 548 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 18, 476 |
| AflIII | ACRYGT | 2 cut(s) | 300, 473 |
| AjnI | CCWGG | 2 cut(s) | 208, 346 |
| AluBI | AGCT | 3 cut(s) | 32, 200, 232 |
| AluI | AGCT | 3 cut(s) | 32, 200, 232 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 495, 527 |
| Asp718I | GGTACC | 1 cut(s) | 526 |
| AspLEI | GCGC | 1 cut(s) | 576 |
| AsuC2I | CCSGG | 1 cut(s) | 531 |
| AsuHPI | GGTGA | 1 cut(s) | 119 |
| BanI | GGYRCC | 1 cut(s) | 526 |
| BccI | CCATC | 2 cut(s) | 53, 182 |
| BciT130I | CCWGG | 2 cut(s) | 210, 348 |
| BclI | TGATCA | 1 cut(s) | 306 |
| BcnI | CCSGG | 1 cut(s) | 531 |
| BfmI | CTRYAG | 1 cut(s) | 36 |
| Bme1390I | CCNGG | 3 cut(s) | 210, 348, 531 |
| BmiI | GGNNCC | 1 cut(s) | 528 |
| BmrFI | CCNGG | 3 cut(s) | 210, 348, 531 |
| BmsI | GCATC | 1 cut(s) | 118 |
| BpuMI | CCSGG | 1 cut(s) | 531 |
| BsaBI | GATNNNNATC | 1 cut(s) | 311 |
| BsaJI | CCNNGG | 3 cut(s) | 208, 530, 563 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 48, 78, 435, 465, 473, 503 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 18, 476 |
| Bse8I | GATNNNNATC | 1 cut(s) | 311 |
| BseBI | CCWGG | 2 cut(s) | 210, 348 |
| BseDI | CCNNGG | 3 cut(s) | 208, 530, 563 |
| BseGI | GGATG | 3 cut(s) | 118, 145, 193 |
| BseJI | GATNNNNATC | 1 cut(s) | 311 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 18, 476 |
| BseRI | GAGGAG | 1 cut(s) | 456 |
| BseYI | CCCAGC | 1 cut(s) | 131 |
| BshNI | GGYRCC | 1 cut(s) | 526 |
| BsiSI | CCGG | 1 cut(s) | 530 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 18, 476 |
| BsmI | GAATGC | 1 cut(s) | 13 |
| Bsp143I | GATC | 3 cut(s) | 85, 306, 312 |
| BspHI | TCATGA | 1 cut(s) | 309 |
| BspLI | GGNNCC | 1 cut(s) | 528 |
| BspT107I | GGYRCC | 1 cut(s) | 526 |
| BssECI | CCNNGG | 3 cut(s) | 208, 530, 563 |
| BssMI | GATC | 3 cut(s) | 85, 306, 312 |
| Bst2UI | CCWGG | 2 cut(s) | 210, 348 |
| Bst4CI | ACNGT | 2 cut(s) | 37, 567 |
| Bst6I | CTCTTC | 1 cut(s) | 45 |
| BstDSI | CCRYGG | 1 cut(s) | 563 |
| BstF5I | GGATG | 3 cut(s) | 118, 145, 193 |
| BstHHI | GCGC | 1 cut(s) | 576 |
| BstKTI | GATC | 3 cut(s) | 88, 309, 315 |
| BstMBI | GATC | 3 cut(s) | 85, 306, 312 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 229 |
| BstNI | CCWGG | 2 cut(s) | 210, 348 |
| BstNSI | RCATGY | 7 cut(s) | 291, 304, 413, 417, 452, 477, 580 |
| BstSCI | CCNGG | 3 cut(s) | 208, 346, 529 |
| BstSFI | CTRYAG | 1 cut(s) | 36 |
| BtgI | CCRYGG | 1 cut(s) | 563 |
| BtsCI | GGATG | 3 cut(s) | 118, 145, 193 |
| CciI | TCATGA | 1 cut(s) | 309 |
| CfoI | GCGC | 1 cut(s) | 576 |
| CsiI | ACCWGGT | 1 cut(s) | 346 |
| Csp6I | GTAC | 4 cut(s) | 205, 216, 527, 547 |
| CviAII | CATG | 9 cut(s) | 272, 288, 301, 310, 410, 414, 449, 474, 577 |
| CviJI | RGCY | 6 cut(s) | 22, 32, 104, 200, 232, 365 |
| CviKI_1 | RGCY | 6 cut(s) | 22, 32, 104, 200, 232, 365 |
| CviQI | GTAC | 4 cut(s) | 205, 216, 527, 547 |
| DpnI | GATC | 3 cut(s) | 87, 308, 314 |
| DpnII | GATC | 3 cut(s) | 85, 306, 312 |
| Eam1104I | CTCTTC | 1 cut(s) | 45 |
| EarI | CTCTTC | 1 cut(s) | 45 |
| Eco57I | CTGAAG | 2 cut(s) | 48, 351 |
| EcoRII | CCWGG | 2 cut(s) | 208, 346 |
| EcoT22I | ATGCAT | 1 cut(s) | 415 |
| FaeI | CATG | 9 cut(s) | 275, 291, 304, 313, 413, 417, 452, 477, 580 |
| FatI | CATG | 9 cut(s) | 271, 287, 300, 309, 409, 413, 448, 473, 576 |
| FbaI | TGATCA | 1 cut(s) | 306 |
| FblI | GTMKAC | 1 cut(s) | 156 |
| FokI | GGATG | 3 cut(s) | 125, 152, 200 |
| GlaI | GCGC | 1 cut(s) | 575 |
| GsaI | CCCAGC | 1 cut(s) | 135 |
| HapII | CCGG | 1 cut(s) | 530 |
| HhaI | GCGC | 1 cut(s) | 576 |
| Hin1II | CATG | 9 cut(s) | 275, 291, 304, 313, 413, 417, 452, 477, 580 |
| Hin6I | GCGC | 1 cut(s) | 574 |
| HinP1I | GCGC | 1 cut(s) | 574 |
| HindIII | AAGCTT | 1 cut(s) | 198 |
| HinfI | GANTC | 2 cut(s) | 158, 482 |
| HpaII | CCGG | 1 cut(s) | 530 |
| HphI | GGTGA | 1 cut(s) | 119 |
| Hpy166II | GTNNAC | 2 cut(s) | 157, 353 |
| Hpy188I | TCNGA | 3 cut(s) | 28, 298, 317 |
| Hpy188III | TCNNGA | 3 cut(s) | 310, 329, 514 |
| Hpy8I | GTNNAC | 2 cut(s) | 157, 353 |
| HpyAV | CCTTC | 3 cut(s) | 11, 326, 529 |
| HpyCH4III | ACNGT | 2 cut(s) | 37, 567 |
| HpyCH4V | TGCA | 2 cut(s) | 413, 429 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 229 |
| Hsp92II | CATG | 9 cut(s) | 275, 291, 304, 313, 413, 417, 452, 477, 580 |
| HspAI | GCGC | 1 cut(s) | 574 |
| KpnI | GGTACC | 1 cut(s) | 530 |
| Ksp22I | TGATCA | 1 cut(s) | 306 |
| Kzo9I | GATC | 3 cut(s) | 85, 306, 312 |
| LpnPI | CCDG | 9 cut(s) | 74, 90, 117, 195, 222, 333, 342, 360, 543 |
| LweI | GCATC | 1 cut(s) | 118 |
| MabI | ACCWGGT | 1 cut(s) | 346 |
| MaeIII | GTNAC | 1 cut(s) | 335 |
| MalI | GATC | 3 cut(s) | 87, 308, 314 |
| MboI | GATC | 3 cut(s) | 85, 306, 312 |
| MboII | GAAGA | 2 cut(s) | 62, 317 |
| MluCI | AATT | 1 cut(s) | 494 |
| MlyI | GAGTC | 2 cut(s) | 152, 491 |
| MnlI | CCTC | 6 cut(s) | 46, 103, 130, 178, 355, 434 |
| Mph1103I | ATGCAT | 1 cut(s) | 415 |
| MseI | TTAA | 2 cut(s) | 261, 570 |
| MspI | CCGG | 1 cut(s) | 530 |
| MspR9I | CCNGG | 3 cut(s) | 210, 348, 531 |
| Mva1269I | GAATGC | 1 cut(s) | 13 |
| MvaI | CCWGG | 2 cut(s) | 210, 348 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 229 |
| NciI | CCSGG | 1 cut(s) | 531 |
| NdeII | GATC | 3 cut(s) | 85, 306, 312 |
| NlaIII | CATG | 9 cut(s) | 275, 291, 304, 313, 413, 417, 452, 477, 580 |
| NlaIV | GGNNCC | 1 cut(s) | 528 |
| NsiI | ATGCAT | 1 cut(s) | 415 |
| NspI | RCATGY | 7 cut(s) | 291, 304, 413, 417, 452, 477, 580 |
| PagI | TCATGA | 1 cut(s) | 309 |
| PciI | ACATGT | 2 cut(s) | 300, 473 |
| PctI | GAATGC | 1 cut(s) | 13 |
| PflFI | GACNNNGTC | 1 cut(s) | 509 |
| PleI | GAGTC | 2 cut(s) | 152, 490 |
| PpsI | GAGTC | 2 cut(s) | 152, 490 |
| PscI | ACATGT | 2 cut(s) | 300, 473 |
| Psp6I | CCWGG | 2 cut(s) | 208, 346 |
| PspFI | CCCAGC | 1 cut(s) | 131 |
| PspGI | CCWGG | 2 cut(s) | 208, 346 |
| PspN4I | GGNNCC | 1 cut(s) | 528 |
| PsyI | GACNNNGTC | 1 cut(s) | 509 |
| RsaI | GTAC | 4 cut(s) | 206, 217, 528, 548 |
| RsaNI | GTAC | 4 cut(s) | 205, 216, 527, 547 |
| SaqAI | TTAA | 2 cut(s) | 261, 570 |
| Sau3AI | GATC | 3 cut(s) | 85, 306, 312 |
| SchI | GAGTC | 2 cut(s) | 152, 491 |
| ScrFI | CCNGG | 3 cut(s) | 210, 348, 531 |
| SetI | ASST | 9 cut(s) | 34, 202, 234, 254, 261, 337, 352, 491, 540 |
| SexAI | ACCWGGT | 1 cut(s) | 346 |
| SfaNI | GCATC | 1 cut(s) | 118 |
| SfcI | CTRYAG | 1 cut(s) | 36 |
| Sse9I | AATT | 1 cut(s) | 494 |
| StyD4I | CCNGG | 3 cut(s) | 208, 346, 529 |
| TaaI | ACNGT | 2 cut(s) | 37, 567 |
| TaqI | TCGA | 4 cut(s) | 126, 161, 183, 513 |
| TasI | AATT | 1 cut(s) | 494 |
| Tru1I | TTAA | 2 cut(s) | 261, 570 |
| Tru9I | TTAA | 2 cut(s) | 261, 570 |
| TspDTI | ATGAA | 4 cut(s) | 20, 30, 188, 372 |
| Tth111I | GACNNNGTC | 1 cut(s) | 509 |
| XceI | RCATGY | 7 cut(s) | 291, 304, 413, 417, 452, 477, 580 |
| XmiI | GTMKAC | 1 cut(s) | 156 |
| Zsp2I | ATGCAT | 1 cut(s) | 415 |