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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 1561 |
| AccIII | TCCGGA | 1 cut(s) | 646 |
| AciI | CCGC | 4 cut(s) | 207, 686, 701, 1561 |
| AclWI | GGATC | 2 cut(s) | 1185, 1603 |
| AcsI | RAATTY | 4 cut(s) | 845, 1333, 1436, 1547 |
| AcuI | CTGAAG | 2 cut(s) | 699, 1509 |
| AfaI | GTAC | 1 cut(s) | 1655 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 387, 770, 1477 |
| AflII | CTTAAG | 1 cut(s) | 881 |
| AgeI | ACCGGT | 1 cut(s) | 568 |
| AjnI | CCWGG | 2 cut(s) | 55, 1036 |
| AleI | CACNNNNGTG | 1 cut(s) | 1328 |
| AluBI | AGCT | 6 cut(s) | 484, 815, 855, 1166, 1206, 1237 |
| AluI | AGCT | 6 cut(s) | 484, 815, 855, 1166, 1206, 1237 |
| Alw26I | GTCTC | 2 cut(s) | 1145, 1636 |
| AlwI | GGATC | 2 cut(s) | 1185, 1603 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 776 |
| Ama87I | CYCGRG | 1 cut(s) | 1007 |
| Aor13HI | TCCGGA | 1 cut(s) | 646 |
| ApeKI | GCWGC | 3 cut(s) | 43, 124, 1418 |
| ApoI | RAATTY | 4 cut(s) | 845, 1333, 1436, 1547 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1573, 1605 |
| AsiGI | ACCGGT | 1 cut(s) | 568 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 494 |
| AspS9I | GGNCC | 3 cut(s) | 140, 566, 1385 |
| AsuHPI | GGTGA | 2 cut(s) | 970, 1342 |
| AsuII | TTCGAA | 1 cut(s) | 597 |
| AsuNHI | GCTAGC | 1 cut(s) | 1024 |
| AvaI | CYCGRG | 1 cut(s) | 1007 |
| AvaII | GGWCC | 3 cut(s) | 140, 566, 1385 |
| AxyI | CCTNAGG | 1 cut(s) | 769 |
| BbvI | GCAGC | 3 cut(s) | 30, 136, 1405 |
| BccI | CCATC | 2 cut(s) | 65, 131 |
| BciT130I | CCWGG | 2 cut(s) | 57, 1038 |
| BciVI | GTATCC | 2 cut(s) | 600, 1512 |
| BclI | TGATCA | 1 cut(s) | 1246 |
| BcoDI | GTCTC | 2 cut(s) | 1145, 1636 |
| BfaI | CTAG | 3 cut(s) | 134, 1025, 1167 |
| BfmI | CTRYAG | 3 cut(s) | 415, 426, 1066 |
| BfrI | CTTAAG | 1 cut(s) | 881 |
| BfuI | GTATCC | 2 cut(s) | 600, 1512 |
| BisI | GCNGC | 3 cut(s) | 44, 125, 1419 |
| BlsI | GCNGC | 3 cut(s) | 45, 126, 1420 |
| Bme1390I | CCNGG | 2 cut(s) | 57, 1038 |
| Bme18I | GGWCC | 3 cut(s) | 140, 566, 1385 |
| BmeT110I | CYCGRG | 1 cut(s) | 1007 |
| BmgT120I | GGNCC | 3 cut(s) | 140, 566, 1385 |
| BmiI | GGNNCC | 3 cut(s) | 176, 231, 1260 |
| BmrFI | CCNGG | 2 cut(s) | 57, 1038 |
| BmsI | GCATC | 1 cut(s) | 421 |
| BmtI | GCTAGC | 1 cut(s) | 1028 |
| BpmI | CTGGAG | 1 cut(s) | 1491 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1173 |
| Bpu14I | TTCGAA | 1 cut(s) | 597 |
| BpuEI | CTTGAG | 2 cut(s) | 506, 1143 |
| BsaJI | CCNNGG | 2 cut(s) | 349, 1037 |
| BsaWI | WCCGGW | 3 cut(s) | 290, 568, 646 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 318, 348 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 387, 770, 1477 |
| Bse118I | RCCGGY | 1 cut(s) | 568 |
| Bse1I | ACTGG | 2 cut(s) | 368, 1084 |
| Bse21I | CCTNAGG | 1 cut(s) | 769 |
| Bse3DI | GCAATG | 3 cut(s) | 657, 672, 1644 |
| BseAI | TCCGGA | 1 cut(s) | 646 |
| BseBI | CCWGG | 2 cut(s) | 57, 1038 |
| BseDI | CCNNGG | 2 cut(s) | 349, 1037 |
| BseGI | GGATG | 7 cut(s) | 76, 280, 591, 643, 1002, 1111, 1486 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 387, 770, 1477 |
| BseMI | GCAATG | 3 cut(s) | 657, 672, 1644 |
| BseMII | CTCAG | 3 cut(s) | 654, 783, 1140 |
| BseNI | ACTGG | 2 cut(s) | 368, 1084 |
| BseXI | GCAGC | 3 cut(s) | 30, 136, 1405 |
| Bsh1236I | CGCG | 1 cut(s) | 1561 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1118 |
| BshTI | ACCGGT | 1 cut(s) | 568 |
| BsiEI | CGRYCG | 1 cut(s) | 1118 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1007 |
| BsiSI | CCGG | 3 cut(s) | 291, 569, 647 |
| BslFI | GGGAC | 1 cut(s) | 52 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 387, 770, 1477 |
| BsmAI | GTCTC | 2 cut(s) | 1145, 1636 |
| BsmFI | GGGAC | 1 cut(s) | 52 |
| BsmI | GAATGC | 1 cut(s) | 732 |
| BsoBI | CYCGRG | 1 cut(s) | 1007 |
| Bsp119I | TTCGAA | 1 cut(s) | 597 |
| Bsp13I | TCCGGA | 1 cut(s) | 646 |
| Bsp143I | GATC | 8 cut(s) | 460, 1108, 1115, 1177, 1246, 1312, 1534, 1595 |
| BspACI | CCGC | 4 cut(s) | 207, 686, 701, 1561 |
| BspCNI | CTCAG | 3 cut(s) | 655, 782, 1141 |
| BspEI | TCCGGA | 1 cut(s) | 646 |
| BspFNI | CGCG | 1 cut(s) | 1561 |
| BspHI | TCATGA | 1 cut(s) | 304 |
| BspLI | GGNNCC | 3 cut(s) | 176, 231, 1260 |
| BspOI | GCTAGC | 1 cut(s) | 1028 |
| BspPI | GGATC | 2 cut(s) | 1185, 1603 |
| BspT104I | TTCGAA | 1 cut(s) | 597 |
| BspTI | CTTAAG | 1 cut(s) | 881 |
| BsrDI | GCAATG | 3 cut(s) | 657, 672, 1644 |
| BsrFI | RCCGGY | 1 cut(s) | 568 |
| BsrI | ACTGG | 2 cut(s) | 368, 1084 |
| BssAI | RCCGGY | 1 cut(s) | 568 |
| BssECI | CCNNGG | 2 cut(s) | 349, 1037 |
| BssMI | GATC | 8 cut(s) | 460, 1108, 1115, 1177, 1246, 1312, 1534, 1595 |
| Bst2UI | CCWGG | 2 cut(s) | 57, 1038 |
| Bst4CI | ACNGT | 4 cut(s) | 184, 535, 727, 1186 |
| Bst6I | CTCTTC | 1 cut(s) | 675 |
| BstAFI | CTTAAG | 1 cut(s) | 881 |
| BstBI | TTCGAA | 1 cut(s) | 597 |
| BstC8I | GCNNGC | 3 cut(s) | 158, 1026, 1618 |
| BstDEI | CTNAG | 5 cut(s) | 66, 663, 769, 1149, 1173 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 768 |
| BstF5I | GGATG | 7 cut(s) | 76, 280, 591, 643, 1002, 1111, 1486 |
| BstFNI | CGCG | 1 cut(s) | 1561 |
| BstKTI | GATC | 8 cut(s) | 463, 1111, 1118, 1180, 1249, 1315, 1537, 1598 |
| BstMAI | GTCTC | 2 cut(s) | 1145, 1636 |
| BstMBI | GATC | 8 cut(s) | 460, 1108, 1115, 1177, 1246, 1312, 1534, 1595 |
| BstMCI | CGRYCG | 1 cut(s) | 1118 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 683 |
| BstNI | CCWGG | 2 cut(s) | 57, 1038 |
| BstNSI | RCATGY | 1 cut(s) | 400 |
| BstSCI | CCNGG | 2 cut(s) | 55, 1036 |
| BstSFI | CTRYAG | 3 cut(s) | 415, 426, 1066 |
| BstUI | CGCG | 1 cut(s) | 1561 |
| BstV1I | GCAGC | 3 cut(s) | 30, 136, 1405 |
| Bsu36I | CCTNAGG | 1 cut(s) | 769 |
| BsuI | GTATCC | 2 cut(s) | 600, 1512 |
| BtsCI | GGATG | 7 cut(s) | 76, 280, 591, 643, 1002, 1111, 1486 |
| Cac8I | GCNNGC | 3 cut(s) | 158, 1026, 1618 |
| CaiI | CAGNNNCTG | 1 cut(s) | 776 |
| CciI | TCATGA | 1 cut(s) | 304 |
| Cfr10I | RCCGGY | 1 cut(s) | 568 |
| Cfr13I | GGNCC | 3 cut(s) | 140, 566, 1385 |
| CseI | GACGC | 1 cut(s) | 49 |
| Csp6I | GTAC | 1 cut(s) | 1654 |
| CspAI | ACCGGT | 1 cut(s) | 568 |
| CviAII | CATG | 7 cut(s) | 218, 223, 305, 397, 871, 1201, 1621 |
| CviQI | GTAC | 1 cut(s) | 1654 |
| DdeI | CTNAG | 5 cut(s) | 66, 663, 769, 1149, 1173 |
| DpnI | GATC | 8 cut(s) | 462, 1110, 1117, 1179, 1248, 1314, 1536, 1597 |
| DpnII | GATC | 8 cut(s) | 460, 1108, 1115, 1177, 1246, 1312, 1534, 1595 |
| Eam1104I | CTCTTC | 1 cut(s) | 675 |
| EarI | CTCTTC | 1 cut(s) | 675 |
| Eco47I | GGWCC | 3 cut(s) | 140, 566, 1385 |
| Eco57I | CTGAAG | 2 cut(s) | 699, 1509 |
| Eco81I | CCTNAGG | 1 cut(s) | 769 |
| Eco88I | CYCGRG | 1 cut(s) | 1007 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 768 |
| EcoRI | GAATTC | 2 cut(s) | 845, 1436 |
| EcoRII | CCWGG | 2 cut(s) | 55, 1036 |
| FaeI | CATG | 7 cut(s) | 221, 226, 308, 400, 874, 1204, 1624 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 140, 172 |
| FaqI | GGGAC | 1 cut(s) | 52 |
| FatI | CATG | 7 cut(s) | 217, 222, 304, 396, 870, 1200, 1620 |
| FbaI | TGATCA | 1 cut(s) | 1246 |
| Fnu4HI | GCNGC | 3 cut(s) | 44, 125, 1419 |
| FokI | GGATG | 7 cut(s) | 83, 287, 598, 630, 989, 1118, 1493 |
| Fsp4HI | GCNGC | 3 cut(s) | 44, 125, 1419 |
| FspBI | CTAG | 3 cut(s) | 134, 1025, 1167 |
| GluI | GCNGC | 3 cut(s) | 44, 125, 1419 |
| GsuI | CTGGAG | 1 cut(s) | 1491 |
| HapII | CCGG | 3 cut(s) | 291, 569, 647 |
| HgaI | GACGC | 1 cut(s) | 49 |
| Hin1II | CATG | 7 cut(s) | 221, 226, 308, 400, 874, 1204, 1624 |
| HinfI | GANTC | 2 cut(s) | 1080, 1288 |
| HpaII | CCGG | 3 cut(s) | 291, 569, 647 |
| HphI | GGTGA | 2 cut(s) | 970, 1342 |
| Hpy166II | GTNNAC | 6 cut(s) | 538, 566, 1138, 1323, 1377, 1654 |
| Hpy188I | TCNGA | 5 cut(s) | 144, 350, 851, 1293, 1600 |
| Hpy8I | GTNNAC | 6 cut(s) | 538, 566, 1138, 1323, 1377, 1654 |
| Hpy99I | CGWCG | 1 cut(s) | 719 |
| HpyAV | CCTTC | 5 cut(s) | 220, 513, 604, 955, 1288 |
| HpyCH4III | ACNGT | 4 cut(s) | 184, 535, 727, 1186 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 683 |
| HpyF3I | CTNAG | 5 cut(s) | 66, 663, 769, 1149, 1173 |
| Hsp92II | CATG | 7 cut(s) | 221, 226, 308, 400, 874, 1204, 1624 |
| Kpn2I | TCCGGA | 1 cut(s) | 646 |
| Ksp22I | TGATCA | 1 cut(s) | 1246 |
| Kzo9I | GATC | 8 cut(s) | 460, 1108, 1115, 1177, 1246, 1312, 1534, 1595 |
| LmnI | GCTCC | 1 cut(s) | 1234 |
| Lsp1109I | GCAGC | 3 cut(s) | 30, 136, 1405 |
| LweI | GCATC | 1 cut(s) | 421 |
| MaeI | CTAG | 3 cut(s) | 134, 1025, 1167 |
| MaeIII | GTNAC | 4 cut(s) | 311, 668, 998, 1189 |
| MalI | GATC | 8 cut(s) | 462, 1110, 1117, 1179, 1248, 1314, 1536, 1597 |
| MboI | GATC | 8 cut(s) | 460, 1108, 1115, 1177, 1246, 1312, 1534, 1595 |
| MboII | GAAGA | 5 cut(s) | 237, 692, 703, 821, 1103 |
| MluCI | AATT | 6 cut(s) | 101, 845, 1333, 1436, 1547, 1639 |
| MlyI | GAGTC | 2 cut(s) | 1089, 1297 |
| MmeI | TCCRAC | 2 cut(s) | 152, 282 |
| MroI | TCCGGA | 1 cut(s) | 646 |
| MroXI | GAANNNNTTC | 1 cut(s) | 494 |
| MseI | TTAA | 6 cut(s) | 281, 320, 530, 882, 984, 1269 |
| MslI | CAYNNNNRTG | 3 cut(s) | 822, 1328, 1649 |
| MspCI | CTTAAG | 1 cut(s) | 881 |
| MspI | CCGG | 3 cut(s) | 291, 569, 647 |
| MspR9I | CCNGG | 2 cut(s) | 57, 1038 |
| Mva1269I | GAATGC | 1 cut(s) | 732 |
| MvaI | CCWGG | 2 cut(s) | 57, 1038 |
| MvnI | CGCG | 1 cut(s) | 1561 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 683 |
| NdeII | GATC | 8 cut(s) | 460, 1108, 1115, 1177, 1246, 1312, 1534, 1595 |
| NheI | GCTAGC | 1 cut(s) | 1024 |
| NlaIII | CATG | 7 cut(s) | 221, 226, 308, 400, 874, 1204, 1624 |
| NlaIV | GGNNCC | 3 cut(s) | 176, 231, 1260 |
| NmuCI | GTSAC | 2 cut(s) | 311, 998 |
| NspI | RCATGY | 1 cut(s) | 400 |
| NspV | TTCGAA | 1 cut(s) | 597 |
| OliI | CACNNNNGTG | 1 cut(s) | 1328 |
| PagI | TCATGA | 1 cut(s) | 304 |
| PctI | GAATGC | 1 cut(s) | 732 |
| PdmI | GAANNNNTTC | 1 cut(s) | 494 |
| PfoI | TCCNGGA | 1 cut(s) | 55 |
| PinAI | ACCGGT | 1 cut(s) | 568 |
| PkrI | GCNGC | 3 cut(s) | 45, 126, 1420 |
| Ple19I | CGATCG | 1 cut(s) | 1118 |
| PleI | GAGTC | 2 cut(s) | 1088, 1296 |
| PpsI | GAGTC | 2 cut(s) | 1088, 1296 |
| Psp6I | CCWGG | 2 cut(s) | 55, 1036 |
| PspGI | CCWGG | 2 cut(s) | 55, 1036 |
| PspN4I | GGNNCC | 3 cut(s) | 176, 231, 1260 |
| PspPI | GGNCC | 3 cut(s) | 140, 566, 1385 |
| PstNI | CAGNNNCTG | 1 cut(s) | 776 |
| PvuI | CGATCG | 1 cut(s) | 1118 |
| RsaI | GTAC | 1 cut(s) | 1655 |
| RsaNI | GTAC | 1 cut(s) | 1654 |
| RseI | CAYNNNNRTG | 3 cut(s) | 822, 1328, 1649 |
| SaqAI | TTAA | 6 cut(s) | 281, 320, 530, 882, 984, 1269 |
| SatI | GCNGC | 3 cut(s) | 44, 125, 1419 |
| Sau3AI | GATC | 8 cut(s) | 460, 1108, 1115, 1177, 1246, 1312, 1534, 1595 |
| Sau96I | GGNCC | 3 cut(s) | 140, 566, 1385 |
| SchI | GAGTC | 2 cut(s) | 1089, 1297 |
| ScrFI | CCNGG | 2 cut(s) | 57, 1038 |
| SfaNI | GCATC | 1 cut(s) | 421 |
| SfcI | CTRYAG | 3 cut(s) | 415, 426, 1066 |
| SfuI | TTCGAA | 1 cut(s) | 597 |
| SinI | GGWCC | 3 cut(s) | 140, 566, 1385 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 822, 1328, 1649 |
| SmlI | CTYRAG | 3 cut(s) | 485, 881, 1158 |
| SmoI | CTYRAG | 3 cut(s) | 485, 881, 1158 |
| Sse9I | AATT | 6 cut(s) | 101, 845, 1333, 1436, 1547, 1639 |
| SsiI | CCGC | 4 cut(s) | 207, 686, 701, 1561 |
| SspMI | CTAG | 3 cut(s) | 134, 1025, 1167 |
| StyD4I | CCNGG | 2 cut(s) | 55, 1036 |
| TaaI | ACNGT | 4 cut(s) | 184, 535, 727, 1186 |
| TaqI | TCGA | 5 cut(s) | 597, 714, 1114, 1118, 1447 |
| TasI | AATT | 6 cut(s) | 101, 845, 1333, 1436, 1547, 1639 |
| Tru1I | TTAA | 6 cut(s) | 281, 320, 530, 882, 984, 1269 |
| Tru9I | TTAA | 6 cut(s) | 281, 320, 530, 882, 984, 1269 |
| TseFI | GTSAC | 2 cut(s) | 311, 998 |
| TseI | GCWGC | 3 cut(s) | 43, 124, 1418 |
| Tsp45I | GTSAC | 2 cut(s) | 311, 998 |
| TspDTI | ATGAA | 7 cut(s) | 206, 239, 423, 623, 1002, 1059, 1513 |
| TspGWI | ACGGA | 1 cut(s) | 1362 |
| Vha464I | CTTAAG | 1 cut(s) | 881 |
| VpaK11BI | GGWCC | 3 cut(s) | 140, 566, 1385 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 768 |
| XapI | RAATTY | 4 cut(s) | 845, 1333, 1436, 1547 |
| XbaI | TCTAGA | 1 cut(s) | 133 |
| XceI | RCATGY | 1 cut(s) | 400 |
| XmnI | GAANNNNTTC | 1 cut(s) | 494 |
| XspI | CTAG | 3 cut(s) | 134, 1025, 1167 |