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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 201 |
| AciI | CCGC | 1 cut(s) | 129 |
| AclWI | GGATC | 1 cut(s) | 577 |
| AcsI | RAATTY | 2 cut(s) | 71, 559 |
| AcuI | CTGAAG | 1 cut(s) | 395 |
| AfaI | GTAC | 3 cut(s) | 407, 418, 624 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 618, 619 |
| AgsI | TTSAA | 2 cut(s) | 487, 515 |
| AjnI | CCWGG | 2 cut(s) | 409, 613 |
| AluBI | AGCT | 1 cut(s) | 245 |
| AluI | AGCT | 1 cut(s) | 245 |
| AlwI | GGATC | 1 cut(s) | 577 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 67 |
| Ama87I | CYCGRG | 1 cut(s) | 605 |
| AoxI | GGCC | 1 cut(s) | 609 |
| ApeKI | GCWGC | 2 cut(s) | 245, 653 |
| ApoI | RAATTY | 2 cut(s) | 71, 559 |
| AspS9I | GGNCC | 2 cut(s) | 166, 610 |
| AsuHPI | GGTGA | 2 cut(s) | 563, 721 |
| AvaI | CYCGRG | 1 cut(s) | 605 |
| AvaII | GGWCC | 1 cut(s) | 166 |
| BbsI | GAAGAC | 3 cut(s) | 363, 512, 702 |
| BbvI | GCAGC | 2 cut(s) | 232, 640 |
| BccI | CCATC | 2 cut(s) | 287, 301 |
| BciT130I | CCWGG | 2 cut(s) | 411, 615 |
| BfaI | CTAG | 2 cut(s) | 237, 255 |
| BfmI | CTRYAG | 2 cut(s) | 282, 690 |
| BisI | GCNGC | 3 cut(s) | 130, 246, 654 |
| BlsI | GCNGC | 3 cut(s) | 131, 247, 655 |
| Bme1390I | CCNGG | 2 cut(s) | 411, 615 |
| Bme18I | GGWCC | 1 cut(s) | 166 |
| BmeT110I | CYCGRG | 1 cut(s) | 605 |
| BmgT120I | GGNCC | 2 cut(s) | 166, 610 |
| BmiI | GGNNCC | 1 cut(s) | 612 |
| BmrFI | CCNGG | 2 cut(s) | 411, 615 |
| BmrI | ACTGGG | 1 cut(s) | 605 |
| BmsI | GCATC | 1 cut(s) | 379 |
| BmuI | ACTGGG | 1 cut(s) | 605 |
| BpiI | GAAGAC | 3 cut(s) | 363, 512, 702 |
| BpuEI | CTTGAG | 1 cut(s) | 724 |
| BsaJI | CCNNGG | 3 cut(s) | 409, 606, 613 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 202, 232 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 618, 619 |
| Bse118I | RCCGGY | 2 cut(s) | 476, 649 |
| Bse1I | ACTGG | 1 cut(s) | 600 |
| BseBI | CCWGG | 2 cut(s) | 411, 615 |
| BseDI | CCNNGG | 3 cut(s) | 409, 606, 613 |
| BseGI | GGATG | 5 cut(s) | 21, 298, 312, 346, 394 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 618, 619 |
| BseNI | ACTGG | 1 cut(s) | 600 |
| BseRI | GAGGAG | 1 cut(s) | 359 |
| BseXI | GCAGC | 2 cut(s) | 232, 640 |
| BsgI | GTGCAG | 1 cut(s) | 404 |
| BshFI | GGCC | 1 cut(s) | 611 |
| BsiHKCI | CYCGRG | 1 cut(s) | 605 |
| BsiSI | CCGG | 2 cut(s) | 477, 650 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 618, 619 |
| BsmI | GAATGC | 1 cut(s) | 25 |
| BsnI | GGCC | 1 cut(s) | 611 |
| BsoBI | CYCGRG | 1 cut(s) | 605 |
| Bsp143I | GATC | 1 cut(s) | 569 |
| BspACI | CCGC | 1 cut(s) | 129 |
| BspANI | GGCC | 1 cut(s) | 611 |
| BspLI | GGNNCC | 1 cut(s) | 612 |
| BspPI | GGATC | 1 cut(s) | 577 |
| BsrFI | RCCGGY | 2 cut(s) | 476, 649 |
| BsrI | ACTGG | 1 cut(s) | 600 |
| BssAI | RCCGGY | 2 cut(s) | 476, 649 |
| BssECI | CCNNGG | 3 cut(s) | 409, 606, 613 |
| BssMI | GATC | 1 cut(s) | 569 |
| Bst2UI | CCWGG | 2 cut(s) | 411, 615 |
| Bst4CI | ACNGT | 3 cut(s) | 63, 283, 511 |
| Bst6I | CTCTTC | 2 cut(s) | 259, 713 |
| BstC8I | GCNNGC | 1 cut(s) | 651 |
| BstDEI | CTNAG | 1 cut(s) | 530 |
| BstF5I | GGATG | 5 cut(s) | 21, 298, 312, 346, 394 |
| BstKTI | GATC | 1 cut(s) | 572 |
| BstMBI | GATC | 1 cut(s) | 569 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 126 |
| BstNI | CCWGG | 2 cut(s) | 411, 615 |
| BstSCI | CCNGG | 2 cut(s) | 409, 613 |
| BstSFI | CTRYAG | 2 cut(s) | 282, 690 |
| BstV1I | GCAGC | 2 cut(s) | 232, 640 |
| BstV2I | GAAGAC | 3 cut(s) | 363, 512, 702 |
| BsuRI | GGCC | 1 cut(s) | 611 |
| BtsCI | GGATG | 5 cut(s) | 21, 298, 312, 346, 394 |
| BtsIMutI | CAGTG | 1 cut(s) | 593 |
| Cac8I | GCNNGC | 1 cut(s) | 651 |
| CaiI | CAGNNNCTG | 1 cut(s) | 67 |
| Cfr10I | RCCGGY | 2 cut(s) | 476, 649 |
| Cfr13I | GGNCC | 2 cut(s) | 166, 610 |
| Csp6I | GTAC | 3 cut(s) | 406, 417, 623 |
| CviAII | CATG | 2 cut(s) | 12, 227 |
| CviJI | RGCY | 6 cut(s) | 245, 400, 611, 639, 649, 653 |
| CviKI_1 | RGCY | 6 cut(s) | 245, 400, 611, 639, 649, 653 |
| CviQI | GTAC | 3 cut(s) | 406, 417, 623 |
| DdeI | CTNAG | 1 cut(s) | 530 |
| DpnI | GATC | 1 cut(s) | 571 |
| DpnII | GATC | 1 cut(s) | 569 |
| Eam1104I | CTCTTC | 2 cut(s) | 259, 713 |
| EarI | CTCTTC | 2 cut(s) | 259, 713 |
| Eco47I | GGWCC | 1 cut(s) | 166 |
| Eco57I | CTGAAG | 1 cut(s) | 395 |
| Eco88I | CYCGRG | 1 cut(s) | 605 |
| EcoO109I | RGGNCCY | 1 cut(s) | 610 |
| EcoRI | GAATTC | 1 cut(s) | 559 |
| EcoRII | CCWGG | 2 cut(s) | 409, 613 |
| FaeI | CATG | 2 cut(s) | 15, 230 |
| FatI | CATG | 2 cut(s) | 11, 226 |
| Fnu4HI | GCNGC | 3 cut(s) | 130, 246, 654 |
| FokI | GGATG | 5 cut(s) | 28, 305, 319, 353, 401 |
| Fsp4HI | GCNGC | 3 cut(s) | 130, 246, 654 |
| FspBI | CTAG | 2 cut(s) | 237, 255 |
| GluI | GCNGC | 3 cut(s) | 130, 246, 654 |
| HaeIII | GGCC | 1 cut(s) | 611 |
| HapII | CCGG | 2 cut(s) | 477, 650 |
| Hin1II | CATG | 2 cut(s) | 15, 230 |
| HinfI | GANTC | 2 cut(s) | 272, 359 |
| HpaII | CCGG | 2 cut(s) | 477, 650 |
| HphI | GGTGA | 2 cut(s) | 563, 721 |
| Hpy188I | TCNGA | 5 cut(s) | 69, 277, 355, 375, 574 |
| Hpy188III | TCNNGA | 2 cut(s) | 502, 567 |
| HpyAV | CCTTC | 3 cut(s) | 24, 320, 542 |
| HpyCH4III | ACNGT | 3 cut(s) | 63, 283, 511 |
| HpyCH4IV | ACGT | 1 cut(s) | 109 |
| HpyCH4V | TGCA | 1 cut(s) | 385 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 126 |
| HpyF3I | CTNAG | 1 cut(s) | 530 |
| HpySE526I | ACGT | 1 cut(s) | 109 |
| Hsp92II | CATG | 2 cut(s) | 15, 230 |
| KroI | GCCGGC | 1 cut(s) | 649 |
| KroNI | GCCGGC | 1 cut(s) | 651 |
| Kzo9I | GATC | 1 cut(s) | 569 |
| Lsp1109I | GCAGC | 2 cut(s) | 232, 640 |
| LweI | GCATC | 1 cut(s) | 379 |
| MaeI | CTAG | 2 cut(s) | 237, 255 |
| MaeII | ACGT | 1 cut(s) | 109 |
| MaeIII | GTNAC | 1 cut(s) | 33 |
| MalI | GATC | 1 cut(s) | 571 |
| MboI | GATC | 1 cut(s) | 569 |
| MboII | GAAGA | 5 cut(s) | 276, 368, 517, 555, 707 |
| MluCI | AATT | 4 cut(s) | 71, 519, 539, 559 |
| MlyI | GAGTC | 1 cut(s) | 353 |
| MroNI | GCCGGC | 1 cut(s) | 649 |
| MseI | TTAA | 3 cut(s) | 162, 434, 663 |
| MspI | CCGG | 2 cut(s) | 477, 650 |
| MspR9I | CCNGG | 2 cut(s) | 411, 615 |
| Mva1269I | GAATGC | 1 cut(s) | 25 |
| MvaI | CCWGG | 2 cut(s) | 411, 615 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 126 |
| NaeI | GCCGGC | 1 cut(s) | 651 |
| NdeII | GATC | 1 cut(s) | 569 |
| NgoMIV | GCCGGC | 1 cut(s) | 649 |
| NlaIII | CATG | 2 cut(s) | 15, 230 |
| NlaIV | GGNNCC | 1 cut(s) | 612 |
| NmuCI | GTSAC | 1 cut(s) | 33 |
| PctI | GAATGC | 1 cut(s) | 25 |
| PdiI | GCCGGC | 1 cut(s) | 651 |
| PfeI | GAWTC | 1 cut(s) | 272 |
| PkrI | GCNGC | 3 cut(s) | 131, 247, 655 |
| PleI | GAGTC | 1 cut(s) | 353 |
| PpsI | GAGTC | 1 cut(s) | 353 |
| PsiI | TTATAA | 1 cut(s) | 201 |
| Psp6I | CCWGG | 2 cut(s) | 409, 613 |
| PspGI | CCWGG | 2 cut(s) | 409, 613 |
| PspN4I | GGNNCC | 1 cut(s) | 612 |
| PspPI | GGNCC | 2 cut(s) | 166, 610 |
| PstNI | CAGNNNCTG | 1 cut(s) | 67 |
| RsaI | GTAC | 3 cut(s) | 407, 418, 624 |
| RsaNI | GTAC | 3 cut(s) | 406, 417, 623 |
| SaqAI | TTAA | 3 cut(s) | 162, 434, 663 |
| SatI | GCNGC | 3 cut(s) | 130, 246, 654 |
| Sau3AI | GATC | 1 cut(s) | 569 |
| Sau96I | GGNCC | 2 cut(s) | 166, 610 |
| SchI | GAGTC | 1 cut(s) | 353 |
| ScrFI | CCNGG | 2 cut(s) | 411, 615 |
| SetI | ASST | 9 cut(s) | 35, 51, 112, 215, 238, 247, 553, 631, 704 |
| SfaNI | GCATC | 1 cut(s) | 379 |
| SfcI | CTRYAG | 2 cut(s) | 282, 690 |
| SinI | GGWCC | 1 cut(s) | 166 |
| SmlI | CTYRAG | 1 cut(s) | 703 |
| SmoI | CTYRAG | 1 cut(s) | 703 |
| Sse9I | AATT | 4 cut(s) | 71, 519, 539, 559 |
| SsiI | CCGC | 1 cut(s) | 129 |
| SspMI | CTAG | 2 cut(s) | 237, 255 |
| StyD4I | CCNGG | 2 cut(s) | 409, 613 |
| TaaI | ACNGT | 3 cut(s) | 63, 283, 511 |
| TaiI | ACGT | 1 cut(s) | 112 |
| TasI | AATT | 4 cut(s) | 71, 519, 539, 559 |
| TauI | GCSGC | 1 cut(s) | 132 |
| TfiI | GAWTC | 1 cut(s) | 272 |
| Tru1I | TTAA | 3 cut(s) | 162, 434, 663 |
| Tru9I | TTAA | 3 cut(s) | 162, 434, 663 |
| TscAI | CASTG | 1 cut(s) | 600 |
| TseFI | GTSAC | 1 cut(s) | 33 |
| TseI | GCWGC | 2 cut(s) | 245, 653 |
| Tsp45I | GTSAC | 1 cut(s) | 33 |
| TspDTI | ATGAA | 1 cut(s) | 32 |
| TspRI | CASTG | 1 cut(s) | 600 |
| VpaK11BI | GGWCC | 1 cut(s) | 166 |
| XapI | RAATTY | 2 cut(s) | 71, 559 |
| XspI | CTAG | 2 cut(s) | 237, 255 |