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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 785 |
| Acc36I | ACCTGC | 1 cut(s) | 799 |
| AccI | GTMKAC | 1 cut(s) | 555 |
| AccII | CGCG | 3 cut(s) | 46, 51, 61 |
| AciI | CCGC | 4 cut(s) | 46, 56, 104, 480 |
| AcsI | RAATTY | 2 cut(s) | 263, 751 |
| AcuI | CTGAAG | 2 cut(s) | 117, 633 |
| AfaI | GTAC | 4 cut(s) | 320, 468, 535, 943 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 188 |
| AgsI | TTSAA | 6 cut(s) | 251, 301, 398, 688, 757, 824 |
| AjnI | CCWGG | 2 cut(s) | 409, 454 |
| AleI | CACNNNNGTG | 1 cut(s) | 746 |
| AluBI | AGCT | 8 cut(s) | 17, 26, 233, 273, 584, 624, 655, 904 |
| AluI | AGCT | 8 cut(s) | 17, 26, 233, 273, 584, 624, 655, 904 |
| Alw26I | GTCTC | 1 cut(s) | 1005 |
| ApoI | RAATTY | 2 cut(s) | 263, 751 |
| AspLEI | GCGC | 3 cut(s) | 46, 51, 61 |
| AsuHPI | GGTGA | 3 cut(s) | 92, 388, 760 |
| AsuNHI | GCTAGC | 1 cut(s) | 442 |
| AxyI | CCTNAGG | 1 cut(s) | 187 |
| BbsI | GAAGAC | 1 cut(s) | 621 |
| BccI | CCATC | 4 cut(s) | 44, 173, 958, 1025 |
| BciT130I | CCWGG | 2 cut(s) | 411, 456 |
| BclI | TGATCA | 1 cut(s) | 664 |
| BcoDI | GTCTC | 1 cut(s) | 1005 |
| BfaI | CTAG | 4 cut(s) | 116, 443, 585, 965 |
| BfmI | CTRYAG | 1 cut(s) | 831 |
| BfuAI | ACCTGC | 1 cut(s) | 799 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 41 |
| BisI | GCNGC | 2 cut(s) | 47, 57 |
| BlsI | GCNGC | 2 cut(s) | 48, 58 |
| Bme1390I | CCNGG | 2 cut(s) | 411, 456 |
| BmiI | GGNNCC | 4 cut(s) | 11, 162, 678, 987 |
| BmrFI | CCNGG | 2 cut(s) | 411, 456 |
| BmsI | GCATC | 2 cut(s) | 22, 507 |
| BmtI | GCTAGC | 1 cut(s) | 446 |
| BpiI | GAAGAC | 1 cut(s) | 621 |
| BpmI | CTGGAG | 1 cut(s) | 96 |
| Bpu10I | CCTNAGC | 1 cut(s) | 591 |
| BpuEI | CTTGAG | 1 cut(s) | 561 |
| Bsa29I | ATCGAT | 2 cut(s) | 882, 978 |
| BsaJI | CCNNGG | 1 cut(s) | 455 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 188 |
| Bse1I | ACTGG | 1 cut(s) | 989 |
| Bse21I | CCTNAGG | 1 cut(s) | 187 |
| BseBI | CCWGG | 2 cut(s) | 411, 456 |
| BseCI | ATCGAT | 2 cut(s) | 882, 978 |
| BseDI | CCNNGG | 1 cut(s) | 455 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 188 |
| BseMII | CTCAG | 2 cut(s) | 201, 417 |
| BseNI | ACTGG | 1 cut(s) | 989 |
| BseYI | CCCAGC | 1 cut(s) | 13 |
| Bsh1236I | CGCG | 3 cut(s) | 46, 51, 61 |
| BshVI | ATCGAT | 2 cut(s) | 882, 978 |
| BslFI | GGGAC | 2 cut(s) | 846, 923 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 188 |
| BsmAI | GTCTC | 1 cut(s) | 1005 |
| BsmBI | CGTCTC | 1 cut(s) | 1005 |
| BsmFI | GGGAC | 2 cut(s) | 846, 923 |
| BsmI | GAATGC | 1 cut(s) | 150 |
| Bsp143I | GATC | 6 cut(s) | 71, 526, 664, 730, 835, 975 |
| BspACI | CCGC | 4 cut(s) | 46, 56, 104, 480 |
| BspCNI | CTCAG | 2 cut(s) | 200, 418 |
| BspDI | ATCGAT | 2 cut(s) | 882, 978 |
| BspFNI | CGCG | 3 cut(s) | 46, 51, 61 |
| BspLI | GGNNCC | 4 cut(s) | 11, 162, 678, 987 |
| BspMI | ACCTGC | 1 cut(s) | 799 |
| BspOI | GCTAGC | 1 cut(s) | 446 |
| BsrI | ACTGG | 1 cut(s) | 989 |
| BssECI | CCNNGG | 1 cut(s) | 455 |
| BssMI | GATC | 6 cut(s) | 71, 526, 664, 730, 835, 975 |
| Bst2UI | CCWGG | 2 cut(s) | 411, 456 |
| Bst4CI | ACNGT | 3 cut(s) | 145, 199, 916 |
| Bst6I | CTCTTC | 1 cut(s) | 296 |
| BstC8I | GCNNGC | 1 cut(s) | 444 |
| BstDEI | CTNAG | 4 cut(s) | 187, 426, 567, 591 |
| BstFNI | CGCG | 3 cut(s) | 46, 51, 61 |
| BstHHI | GCGC | 3 cut(s) | 46, 51, 61 |
| BstKTI | GATC | 6 cut(s) | 74, 529, 667, 733, 838, 978 |
| BstMAI | GTCTC | 1 cut(s) | 1005 |
| BstMBI | GATC | 6 cut(s) | 71, 526, 664, 730, 835, 975 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 23, 32, 41, 67, 101 |
| BstNI | CCWGG | 2 cut(s) | 411, 456 |
| BstSCI | CCNGG | 2 cut(s) | 409, 454 |
| BstSFI | CTRYAG | 1 cut(s) | 831 |
| BstUI | CGCG | 3 cut(s) | 46, 51, 61 |
| BstV2I | GAAGAC | 1 cut(s) | 621 |
| Bsu15I | ATCGAT | 2 cut(s) | 882, 978 |
| Bsu36I | CCTNAGG | 1 cut(s) | 187 |
| BsuTUI | ATCGAT | 2 cut(s) | 882, 978 |
| BtsIMutI | CAGTG | 1 cut(s) | 996 |
| BveI | ACCTGC | 1 cut(s) | 799 |
| Cac8I | GCNNGC | 1 cut(s) | 444 |
| CfoI | GCGC | 3 cut(s) | 46, 51, 61 |
| ClaI | ATCGAT | 2 cut(s) | 882, 978 |
| CsiI | ACCWGGT | 1 cut(s) | 409 |
| Csp6I | GTAC | 4 cut(s) | 319, 467, 534, 942 |
| CviAII | CATG | 3 cut(s) | 619, 770, 1000 |
| CviQI | GTAC | 4 cut(s) | 319, 467, 534, 942 |
| DdeI | CTNAG | 4 cut(s) | 187, 426, 567, 591 |
| DpnI | GATC | 6 cut(s) | 73, 528, 666, 732, 837, 977 |
| DpnII | GATC | 6 cut(s) | 71, 526, 664, 730, 835, 975 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 785 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 785 |
| Eam1104I | CTCTTC | 1 cut(s) | 296 |
| EarI | CTCTTC | 1 cut(s) | 296 |
| Eco57I | CTGAAG | 2 cut(s) | 117, 633 |
| Eco81I | CCTNAGG | 1 cut(s) | 187 |
| EcoRI | GAATTC | 1 cut(s) | 263 |
| EcoRII | CCWGG | 2 cut(s) | 409, 454 |
| Esp3I | CGTCTC | 1 cut(s) | 1005 |
| FaeI | CATG | 3 cut(s) | 622, 773, 1003 |
| FaqI | GGGAC | 2 cut(s) | 846, 923 |
| FatI | CATG | 3 cut(s) | 618, 769, 999 |
| FbaI | TGATCA | 1 cut(s) | 664 |
| FblI | GTMKAC | 1 cut(s) | 555 |
| Fnu4HI | GCNGC | 2 cut(s) | 47, 57 |
| Fsp4HI | GCNGC | 2 cut(s) | 47, 57 |
| FspBI | CTAG | 4 cut(s) | 116, 443, 585, 965 |
| GlaI | GCGC | 3 cut(s) | 45, 50, 60 |
| GluI | GCNGC | 2 cut(s) | 47, 57 |
| GsaI | CCCAGC | 1 cut(s) | 17 |
| GsuI | CTGGAG | 1 cut(s) | 96 |
| HhaI | GCGC | 3 cut(s) | 46, 51, 61 |
| Hin1II | CATG | 3 cut(s) | 622, 773, 1003 |
| Hin6I | GCGC | 3 cut(s) | 44, 49, 59 |
| HinP1I | GCGC | 3 cut(s) | 44, 49, 59 |
| HindIII | AAGCTT | 1 cut(s) | 24 |
| HinfI | GANTC | 2 cut(s) | 706, 884 |
| HphI | GGTGA | 3 cut(s) | 92, 388, 760 |
| Hpy166II | GTNNAC | 2 cut(s) | 556, 741 |
| Hpy188I | TCNGA | 5 cut(s) | 22, 31, 269, 681, 711 |
| Hpy188III | TCNNGA | 4 cut(s) | 75, 155, 425, 824 |
| Hpy8I | GTNNAC | 2 cut(s) | 556, 741 |
| Hpy99I | CGWCG | 1 cut(s) | 137 |
| HpyAV | CCTTC | 2 cut(s) | 373, 706 |
| HpyCH4III | ACNGT | 3 cut(s) | 145, 199, 916 |
| HpyCH4V | TGCA | 1 cut(s) | 502 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 23, 32, 41, 67, 101 |
| HpyF3I | CTNAG | 4 cut(s) | 187, 426, 567, 591 |
| Hsp92II | CATG | 3 cut(s) | 622, 773, 1003 |
| HspAI | GCGC | 3 cut(s) | 44, 49, 59 |
| Ksp22I | TGATCA | 1 cut(s) | 664 |
| Kzo9I | GATC | 6 cut(s) | 71, 526, 664, 730, 835, 975 |
| LmnI | GCTCC | 3 cut(s) | 166, 652, 805 |
| LweI | GCATC | 2 cut(s) | 22, 507 |
| MabI | ACCWGGT | 1 cut(s) | 409 |
| MaeI | CTAG | 4 cut(s) | 116, 443, 585, 965 |
| MaeIII | GTNAC | 2 cut(s) | 607, 995 |
| MalI | GATC | 6 cut(s) | 73, 528, 666, 732, 837, 977 |
| MboI | GATC | 6 cut(s) | 71, 526, 664, 730, 835, 975 |
| MboII | GAAGA | 5 cut(s) | 110, 121, 313, 521, 626 |
| MluCI | AATT | 2 cut(s) | 263, 751 |
| MseI | TTAA | 2 cut(s) | 402, 857 |
| MslI | CAYNNNNRTG | 3 cut(s) | 240, 515, 746 |
| MspR9I | CCNGG | 2 cut(s) | 411, 456 |
| MteI | GCGCNGCGC | 1 cut(s) | 47 |
| Mva1269I | GAATGC | 1 cut(s) | 150 |
| MvaI | CCWGG | 2 cut(s) | 411, 456 |
| MvnI | CGCG | 3 cut(s) | 46, 51, 61 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 23, 32, 41, 67, 101 |
| NdeII | GATC | 6 cut(s) | 71, 526, 664, 730, 835, 975 |
| NheI | GCTAGC | 1 cut(s) | 442 |
| NlaIII | CATG | 3 cut(s) | 622, 773, 1003 |
| NlaIV | GGNNCC | 4 cut(s) | 11, 162, 678, 987 |
| OliI | CACNNNNGTG | 1 cut(s) | 746 |
| PctI | GAATGC | 1 cut(s) | 150 |
| PfeI | GAWTC | 2 cut(s) | 706, 884 |
| PkrI | GCNGC | 2 cut(s) | 48, 58 |
| Psp6I | CCWGG | 2 cut(s) | 409, 454 |
| PspFI | CCCAGC | 1 cut(s) | 13 |
| PspGI | CCWGG | 2 cut(s) | 409, 454 |
| PspN4I | GGNNCC | 4 cut(s) | 11, 162, 678, 987 |
| RsaI | GTAC | 4 cut(s) | 320, 468, 535, 943 |
| RsaNI | GTAC | 4 cut(s) | 319, 467, 534, 942 |
| RseI | CAYNNNNRTG | 3 cut(s) | 240, 515, 746 |
| SaqAI | TTAA | 2 cut(s) | 402, 857 |
| SatI | GCNGC | 2 cut(s) | 47, 57 |
| Sau3AI | GATC | 6 cut(s) | 71, 526, 664, 730, 835, 975 |
| ScrFI | CCNGG | 2 cut(s) | 411, 456 |
| SexAI | ACCWGGT | 1 cut(s) | 409 |
| SfaNI | GCATC | 2 cut(s) | 22, 507 |
| SfcI | CTRYAG | 1 cut(s) | 831 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 240, 515, 746 |
| SmlI | CTYRAG | 1 cut(s) | 576 |
| SmoI | CTYRAG | 1 cut(s) | 576 |
| Sse9I | AATT | 2 cut(s) | 263, 751 |
| SsiI | CCGC | 4 cut(s) | 46, 56, 104, 480 |
| SspMI | CTAG | 4 cut(s) | 116, 443, 585, 965 |
| StyD4I | CCNGG | 2 cut(s) | 409, 454 |
| TaaI | ACNGT | 3 cut(s) | 145, 199, 916 |
| TaqI | TCGA | 5 cut(s) | 120, 132, 345, 882, 978 |
| TasI | AATT | 2 cut(s) | 263, 751 |
| TatI | WGTACW | 2 cut(s) | 318, 941 |
| TauI | GCSGC | 2 cut(s) | 49, 59 |
| TfiI | GAWTC | 2 cut(s) | 706, 884 |
| Tru1I | TTAA | 2 cut(s) | 402, 857 |
| Tru9I | TTAA | 2 cut(s) | 402, 857 |
| TscAI | CASTG | 1 cut(s) | 996 |
| TspDTI | ATGAA | 4 cut(s) | 276, 345, 420, 477 |
| TspRI | CASTG | 1 cut(s) | 996 |
| XapI | RAATTY | 2 cut(s) | 263, 751 |
| XmiI | GTMKAC | 1 cut(s) | 555 |
| XspI | CTAG | 4 cut(s) | 116, 443, 585, 965 |