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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 864 |
| AccB1I | GGYRCC | 2 cut(s) | 713, 1215 |
| AccIII | TCCGGA | 1 cut(s) | 38 |
| AciI | CCGC | 3 cut(s) | 198, 811, 1352 |
| AcsI | RAATTY | 3 cut(s) | 748, 900, 1331 |
| AcuI | CTGAAG | 2 cut(s) | 124, 1242 |
| AfaI | GTAC | 5 cut(s) | 399, 558, 616, 1067, 1300 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 144, 203, 204, 407, 710 |
| AjnI | CCWGG | 2 cut(s) | 52, 1590 |
| AluBI | AGCT | 6 cut(s) | 167, 388, 740, 1015, 1132, 1553 |
| AluI | AGCT | 6 cut(s) | 167, 388, 740, 1015, 1132, 1553 |
| Alw26I | GTCTC | 1 cut(s) | 717 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 806 |
| Ama87I | CYCGRG | 1 cut(s) | 632 |
| Aor13HI | TCCGGA | 1 cut(s) | 38 |
| AoxI | GGCC | 1 cut(s) | 497 |
| ApeKI | GCWGC | 6 cut(s) | 28, 219, 359, 656, 754, 1550 |
| ApoI | RAATTY | 3 cut(s) | 748, 900, 1331 |
| AseI | ATTAAT | 1 cut(s) | 186 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1067, 1187 |
| AspS9I | GGNCC | 5 cut(s) | 41, 180, 269, 1139, 1556 |
| AsuC2I | CCSGG | 2 cut(s) | 633, 634 |
| AsuHPI | GGTGA | 1 cut(s) | 1213 |
| AsuII | TTCGAA | 1 cut(s) | 1472 |
| AvaI | CYCGRG | 1 cut(s) | 632 |
| AvaII | GGWCC | 5 cut(s) | 41, 180, 269, 1139, 1556 |
| BanI | GGYRCC | 2 cut(s) | 713, 1215 |
| BbsI | GAAGAC | 2 cut(s) | 492, 644 |
| BbvI | GCAGC | 6 cut(s) | 15, 231, 346, 643, 741, 1562 |
| BccI | CCATC | 8 cut(s) | 107, 641, 1084, 1149, 1191, 1387, 1536, 1540 |
| BciT130I | CCWGG | 2 cut(s) | 54, 1592 |
| BciVI | GTATCC | 3 cut(s) | 227, 1173, 1580 |
| BcnI | CCSGG | 2 cut(s) | 633, 634 |
| BcoDI | GTCTC | 1 cut(s) | 717 |
| BfaI | CTAG | 5 cut(s) | 330, 426, 533, 741, 1037 |
| BfuI | GTATCC | 3 cut(s) | 227, 1173, 1580 |
| BisI | GCNGC | 6 cut(s) | 29, 220, 360, 657, 755, 1551 |
| BlsI | GCNGC | 6 cut(s) | 30, 221, 361, 658, 756, 1552 |
| BmcAI | AGTACT | 1 cut(s) | 1067 |
| Bme1390I | CCNGG | 4 cut(s) | 54, 633, 634, 1592 |
| Bme18I | GGWCC | 5 cut(s) | 41, 180, 269, 1139, 1556 |
| BmeT110I | CYCGRG | 1 cut(s) | 632 |
| BmgT120I | GGNCC | 5 cut(s) | 41, 180, 269, 1139, 1556 |
| BmiI | GGNNCC | 3 cut(s) | 715, 833, 1217 |
| BmrFI | CCNGG | 4 cut(s) | 54, 633, 634, 1592 |
| BmsI | GCATC | 6 cut(s) | 124, 322, 592, 1120, 1282, 1352 |
| BpiI | GAAGAC | 2 cut(s) | 492, 644 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 156, 188 |
| Bpu14I | TTCGAA | 1 cut(s) | 1472 |
| BpuEI | CTTGAG | 2 cut(s) | 953, 1079 |
| BpuMI | CCSGG | 2 cut(s) | 633, 634 |
| BsaJI | CCNNGG | 2 cut(s) | 632, 1617 |
| BsaWI | WCCGGW | 2 cut(s) | 38, 407 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 402, 432 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 144, 203, 204, 407, 710 |
| Bse1I | ACTGG | 4 cut(s) | 697, 1142, 1383, 1481 |
| Bse3DI | GCAATG | 1 cut(s) | 617 |
| BseAI | TCCGGA | 1 cut(s) | 38 |
| BseBI | CCWGG | 2 cut(s) | 54, 1592 |
| BseDI | CCNNGG | 2 cut(s) | 632, 1617 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 144, 203, 204, 407, 710 |
| BseMI | GCAATG | 1 cut(s) | 617 |
| BseNI | ACTGG | 4 cut(s) | 697, 1142, 1383, 1481 |
| BseRI | GAGGAG | 4 cut(s) | 395, 398, 428, 1365 |
| BseXI | GCAGC | 6 cut(s) | 15, 231, 346, 643, 741, 1562 |
| BshFI | GGCC | 1 cut(s) | 499 |
| BshNI | GGYRCC | 2 cut(s) | 713, 1215 |
| BsiHKCI | CYCGRG | 1 cut(s) | 632 |
| BsiSI | CCGG | 3 cut(s) | 39, 408, 633 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 144, 203, 204, 407, 710 |
| BsmAI | GTCTC | 1 cut(s) | 717 |
| BsmI | GAATGC | 1 cut(s) | 1345 |
| BsnI | GGCC | 1 cut(s) | 499 |
| BsoBI | CYCGRG | 1 cut(s) | 632 |
| Bsp119I | TTCGAA | 1 cut(s) | 1472 |
| Bsp13I | TCCGGA | 1 cut(s) | 38 |
| Bsp143I | GATC | 3 cut(s) | 33, 94, 923 |
| BspACI | CCGC | 3 cut(s) | 198, 811, 1352 |
| BspANI | GGCC | 1 cut(s) | 499 |
| BspEI | TCCGGA | 1 cut(s) | 38 |
| BspHI | TCATGA | 2 cut(s) | 306, 1092 |
| BspLI | GGNNCC | 3 cut(s) | 715, 833, 1217 |
| BspT104I | TTCGAA | 1 cut(s) | 1472 |
| BspT107I | GGYRCC | 2 cut(s) | 713, 1215 |
| BsrDI | GCAATG | 1 cut(s) | 617 |
| BsrI | ACTGG | 4 cut(s) | 697, 1142, 1383, 1481 |
| BssECI | CCNNGG | 2 cut(s) | 632, 1617 |
| BssMI | GATC | 3 cut(s) | 33, 94, 923 |
| BssT1I | CCWWGG | 1 cut(s) | 1617 |
| Bst2UI | CCWGG | 2 cut(s) | 54, 1592 |
| Bst4CI | ACNGT | 6 cut(s) | 376, 446, 596, 802, 1048, 1108 |
| Bst6I | CTCTTC | 1 cut(s) | 1248 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 904 |
| BstBI | TTCGAA | 1 cut(s) | 1472 |
| BstC8I | GCNNGC | 5 cut(s) | 357, 390, 497, 1029, 1055 |
| BstDEI | CTNAG | 2 cut(s) | 161, 1419 |
| BstKTI | GATC | 3 cut(s) | 36, 97, 926 |
| BstMAI | GTCTC | 1 cut(s) | 717 |
| BstMBI | GATC | 3 cut(s) | 33, 94, 923 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 904, 989, 1301 |
| BstNI | CCWGG | 2 cut(s) | 54, 1592 |
| BstSCI | CCNGG | 4 cut(s) | 52, 631, 632, 1590 |
| BstV1I | GCAGC | 6 cut(s) | 15, 231, 346, 643, 741, 1562 |
| BstV2I | GAAGAC | 2 cut(s) | 492, 644 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1598 |
| BsuI | GTATCC | 3 cut(s) | 227, 1173, 1580 |
| BsuRI | GGCC | 1 cut(s) | 499 |
| BtsIMutI | CAGTG | 3 cut(s) | 807, 1365, 1390 |
| Cac8I | GCNNGC | 5 cut(s) | 357, 390, 497, 1029, 1055 |
| CaiI | CAGNNNCTG | 1 cut(s) | 806 |
| CciI | TCATGA | 2 cut(s) | 306, 1092 |
| Cfr13I | GGNCC | 5 cut(s) | 41, 180, 269, 1139, 1556 |
| Cfr9I | CCCGGG | 1 cut(s) | 632 |
| CseI | GACGC | 1 cut(s) | 34 |
| CsiI | ACCWGGT | 2 cut(s) | 52, 1590 |
| Csp6I | GTAC | 5 cut(s) | 398, 557, 615, 1066, 1299 |
| CviAII | CATG | 7 cut(s) | 307, 670, 878, 895, 1093, 1180, 1507 |
| CviQI | GTAC | 5 cut(s) | 398, 557, 615, 1066, 1299 |
| DdeI | CTNAG | 2 cut(s) | 161, 1419 |
| DpnI | GATC | 3 cut(s) | 35, 96, 925 |
| DpnII | GATC | 3 cut(s) | 33, 94, 923 |
| DraI | TTTAAA | 1 cut(s) | 157 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 864 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 864 |
| Eam1104I | CTCTTC | 1 cut(s) | 1248 |
| EarI | CTCTTC | 1 cut(s) | 1248 |
| Eco130I | CCWWGG | 1 cut(s) | 1617 |
| Eco147I | AGGCCT | 1 cut(s) | 499 |
| Eco32I | GATATC | 1 cut(s) | 335 |
| Eco47I | GGWCC | 5 cut(s) | 41, 180, 269, 1139, 1556 |
| Eco57I | CTGAAG | 2 cut(s) | 124, 1242 |
| Eco88I | CYCGRG | 1 cut(s) | 632 |
| EcoRII | CCWGG | 2 cut(s) | 52, 1590 |
| EcoRV | GATATC | 1 cut(s) | 335 |
| EcoT14I | CCWWGG | 1 cut(s) | 1617 |
| EcoT22I | ATGCAT | 1 cut(s) | 1345 |
| ErhI | CCWWGG | 1 cut(s) | 1617 |
| FaeI | CATG | 7 cut(s) | 310, 673, 881, 898, 1096, 1183, 1510 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 484, 516, 1116, 1148 |
| FatI | CATG | 7 cut(s) | 306, 669, 877, 894, 1092, 1179, 1506 |
| FauI | CCCGC | 1 cut(s) | 205 |
| Fnu4HI | GCNGC | 6 cut(s) | 29, 220, 360, 657, 755, 1551 |
| Fsp4HI | GCNGC | 6 cut(s) | 29, 220, 360, 657, 755, 1551 |
| FspBI | CTAG | 5 cut(s) | 330, 426, 533, 741, 1037 |
| GluI | GCNGC | 6 cut(s) | 29, 220, 360, 657, 755, 1551 |
| HaeIII | GGCC | 1 cut(s) | 499 |
| HapII | CCGG | 3 cut(s) | 39, 408, 633 |
| HgaI | GACGC | 1 cut(s) | 34 |
| Hin1II | CATG | 7 cut(s) | 310, 673, 881, 898, 1096, 1183, 1510 |
| HincII | GTYRAC | 1 cut(s) | 24 |
| HindII | GTYRAC | 1 cut(s) | 24 |
| HinfI | GANTC | 4 cut(s) | 700, 1096, 1308, 1459 |
| HpaII | CCGG | 3 cut(s) | 39, 408, 633 |
| HphI | GGTGA | 1 cut(s) | 1213 |
| Hpy166II | GTNNAC | 3 cut(s) | 24, 269, 1388 |
| Hpy188I | TCNGA | 4 cut(s) | 143, 249, 1121, 1338 |
| Hpy188III | TCNNGA | 5 cut(s) | 39, 307, 569, 932, 1093 |
| Hpy8I | GTNNAC | 3 cut(s) | 24, 269, 1388 |
| Hpy99I | CGWCG | 1 cut(s) | 321 |
| HpyAV | CCTTC | 2 cut(s) | 148, 1217 |
| HpyCH4III | ACNGT | 6 cut(s) | 376, 446, 596, 802, 1048, 1108 |
| HpyCH4IV | ACGT | 3 cut(s) | 69, 1279, 1439 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 904, 989, 1301 |
| HpyF3I | CTNAG | 2 cut(s) | 161, 1419 |
| HpySE526I | ACGT | 3 cut(s) | 69, 1279, 1439 |
| Hsp92II | CATG | 7 cut(s) | 310, 673, 881, 898, 1096, 1183, 1510 |
| Kpn2I | TCCGGA | 1 cut(s) | 38 |
| Kzo9I | GATC | 3 cut(s) | 33, 94, 923 |
| LmnI | GCTCC | 5 cut(s) | 385, 397, 831, 912, 1621 |
| Lsp1109I | GCAGC | 6 cut(s) | 15, 231, 346, 643, 741, 1562 |
| LweI | GCATC | 6 cut(s) | 124, 322, 592, 1120, 1282, 1352 |
| MabI | ACCWGGT | 2 cut(s) | 52, 1590 |
| MaeI | CTAG | 5 cut(s) | 330, 426, 533, 741, 1037 |
| MaeII | ACGT | 3 cut(s) | 69, 1279, 1439 |
| MaeIII | GTNAC | 4 cut(s) | 729, 838, 884, 1625 |
| MalI | GATC | 3 cut(s) | 35, 96, 925 |
| MboI | GATC | 3 cut(s) | 33, 94, 923 |
| MluCI | AATT | 5 cut(s) | 519, 708, 748, 900, 1331 |
| MmeI | TCCRAC | 2 cut(s) | 485, 725 |
| Mph1103I | ATGCAT | 1 cut(s) | 1345 |
| MroI | TCCGGA | 1 cut(s) | 38 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1067, 1187 |
| MseI | TTAA | 9 cut(s) | 86, 156, 186, 404, 854, 870, 1403, 1481, 1596 |
| MslI | CAYNNNNRTG | 2 cut(s) | 893, 1184 |
| MspA1I | CMGCKG | 1 cut(s) | 1553 |
| MspI | CCGG | 3 cut(s) | 39, 408, 633 |
| MspR9I | CCNGG | 4 cut(s) | 54, 633, 634, 1592 |
| Mva1269I | GAATGC | 1 cut(s) | 1345 |
| MvaI | CCWGG | 2 cut(s) | 54, 1592 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 904, 989, 1301 |
| NciI | CCSGG | 2 cut(s) | 633, 634 |
| NdeII | GATC | 3 cut(s) | 33, 94, 923 |
| NlaIII | CATG | 7 cut(s) | 310, 673, 881, 898, 1096, 1183, 1510 |
| NlaIV | GGNNCC | 3 cut(s) | 715, 833, 1217 |
| NmuCI | GTSAC | 3 cut(s) | 838, 884, 1625 |
| NsiI | ATGCAT | 1 cut(s) | 1345 |
| NspV | TTCGAA | 1 cut(s) | 1472 |
| PagI | TCATGA | 2 cut(s) | 306, 1092 |
| PceI | AGGCCT | 1 cut(s) | 499 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 352 |
| PctI | GAATGC | 1 cut(s) | 1345 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1067, 1187 |
| PfeI | GAWTC | 4 cut(s) | 700, 1096, 1308, 1459 |
| PkrI | GCNGC | 6 cut(s) | 30, 221, 361, 658, 756, 1552 |
| PshBI | ATTAAT | 1 cut(s) | 186 |
| Psp6I | CCWGG | 2 cut(s) | 52, 1590 |
| PspGI | CCWGG | 2 cut(s) | 52, 1590 |
| PspN4I | GGNNCC | 3 cut(s) | 715, 833, 1217 |
| PspPI | GGNCC | 5 cut(s) | 41, 180, 269, 1139, 1556 |
| PstNI | CAGNNNCTG | 1 cut(s) | 806 |
| PvuII | CAGCTG | 1 cut(s) | 1553 |
| RsaI | GTAC | 5 cut(s) | 399, 558, 616, 1067, 1300 |
| RsaNI | GTAC | 5 cut(s) | 398, 557, 615, 1066, 1299 |
| RseI | CAYNNNNRTG | 2 cut(s) | 893, 1184 |
| SaqAI | TTAA | 9 cut(s) | 86, 156, 186, 404, 854, 870, 1403, 1481, 1596 |
| SatI | GCNGC | 6 cut(s) | 29, 220, 360, 657, 755, 1551 |
| Sau3AI | GATC | 3 cut(s) | 33, 94, 923 |
| Sau96I | GGNCC | 5 cut(s) | 41, 180, 269, 1139, 1556 |
| ScaI | AGTACT | 1 cut(s) | 1067 |
| ScrFI | CCNGG | 4 cut(s) | 54, 633, 634, 1592 |
| SexAI | ACCWGGT | 2 cut(s) | 52, 1590 |
| SfaNI | GCATC | 6 cut(s) | 124, 322, 592, 1120, 1282, 1352 |
| SfuI | TTCGAA | 1 cut(s) | 1472 |
| SinI | GGWCC | 5 cut(s) | 41, 180, 269, 1139, 1556 |
| SmaI | CCCGGG | 1 cut(s) | 634 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 893, 1184 |
| SmlI | CTYRAG | 2 cut(s) | 932, 1058 |
| SmoI | CTYRAG | 2 cut(s) | 932, 1058 |
| Sse9I | AATT | 5 cut(s) | 519, 708, 748, 900, 1331 |
| SseBI | AGGCCT | 1 cut(s) | 499 |
| SsiI | CCGC | 3 cut(s) | 198, 811, 1352 |
| SspMI | CTAG | 5 cut(s) | 330, 426, 533, 741, 1037 |
| StuI | AGGCCT | 1 cut(s) | 499 |
| StyD4I | CCNGG | 4 cut(s) | 52, 631, 632, 1590 |
| StyI | CCWWGG | 1 cut(s) | 1617 |
| TaaI | ACNGT | 6 cut(s) | 376, 446, 596, 802, 1048, 1108 |
| TaiI | ACGT | 3 cut(s) | 72, 1282, 1442 |
| TaqI | TCGA | 8 cut(s) | 319, 346, 366, 570, 1086, 1153, 1251, 1472 |
| TasI | AATT | 5 cut(s) | 519, 708, 748, 900, 1331 |
| TatI | WGTACW | 1 cut(s) | 1065 |
| TfiI | GAWTC | 4 cut(s) | 700, 1096, 1308, 1459 |
| Tru1I | TTAA | 9 cut(s) | 86, 156, 186, 404, 854, 870, 1403, 1481, 1596 |
| Tru9I | TTAA | 9 cut(s) | 86, 156, 186, 404, 854, 870, 1403, 1481, 1596 |
| TscAI | CASTG | 3 cut(s) | 807, 1365, 1390 |
| TseFI | GTSAC | 3 cut(s) | 838, 884, 1625 |
| TseI | GCWGC | 6 cut(s) | 28, 219, 359, 656, 754, 1550 |
| Tsp45I | GTSAC | 3 cut(s) | 838, 884, 1625 |
| TspDTI | ATGAA | 9 cut(s) | 17, 295, 455, 777, 1088, 1196, 1449, 1515, 1581 |
| TspMI | CCCGGG | 1 cut(s) | 632 |
| TspRI | CASTG | 3 cut(s) | 807, 1365, 1390 |
| VpaK11BI | GGWCC | 5 cut(s) | 41, 180, 269, 1139, 1556 |
| VspI | ATTAAT | 1 cut(s) | 186 |
| XapI | RAATTY | 3 cut(s) | 748, 900, 1331 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1390 |
| XmaI | CCCGGG | 1 cut(s) | 632 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1067, 1187 |
| XspI | CTAG | 5 cut(s) | 330, 426, 533, 741, 1037 |
| ZrmI | AGTACT | 1 cut(s) | 1067 |
| Zsp2I | ATGCAT | 1 cut(s) | 1345 |