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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 581 |
| AccI | GTMKAC | 1 cut(s) | 458 |
| AclWI | GGATC | 1 cut(s) | 658 |
| AcsI | RAATTY | 3 cut(s) | 62, 71, 280 |
| AfaI | GTAC | 2 cut(s) | 542, 653 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 492, 581 |
| AgsI | TTSAA | 3 cut(s) | 59, 124, 676 |
| AjnI | CCWGG | 1 cut(s) | 451 |
| AluBI | AGCT | 3 cut(s) | 198, 704, 712 |
| AluI | AGCT | 3 cut(s) | 198, 704, 712 |
| AlwI | GGATC | 1 cut(s) | 658 |
| ApoI | RAATTY | 3 cut(s) | 62, 71, 280 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 63, 481, 510, 630 |
| AspS9I | GGNCC | 1 cut(s) | 166 |
| AsuC2I | CCSGG | 1 cut(s) | 636 |
| AsuHPI | GGTGA | 1 cut(s) | 596 |
| AvaII | GGWCC | 1 cut(s) | 166 |
| BbsI | GAAGAC | 1 cut(s) | 354 |
| BccI | CCATC | 4 cut(s) | 235, 249, 374, 490 |
| BciT130I | CCWGG | 1 cut(s) | 453 |
| BcnI | CCSGG | 1 cut(s) | 636 |
| BfmI | CTRYAG | 1 cut(s) | 38 |
| Bme1390I | CCNGG | 2 cut(s) | 453, 636 |
| Bme18I | GGWCC | 1 cut(s) | 166 |
| BmgT120I | GGNCC | 1 cut(s) | 166 |
| BmiI | GGNNCC | 1 cut(s) | 633 |
| BmrFI | CCNGG | 2 cut(s) | 453, 636 |
| BmsI | GCATC | 3 cut(s) | 86, 543, 550 |
| BpiI | GAAGAC | 1 cut(s) | 354 |
| Bpu10I | CCTNAGC | 1 cut(s) | 705 |
| BpuMI | CCSGG | 1 cut(s) | 636 |
| BsaJI | CCNNGG | 3 cut(s) | 452, 635, 668 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 492, 581 |
| Bse1I | ACTGG | 1 cut(s) | 567 |
| BseBI | CCWGG | 1 cut(s) | 453 |
| BseDI | CCNNGG | 3 cut(s) | 452, 635, 668 |
| BseGI | GGATG | 5 cut(s) | 21, 227, 310, 337, 501 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 492, 581 |
| BseMII | CTCAG | 2 cut(s) | 129, 609 |
| BseNI | ACTGG | 1 cut(s) | 567 |
| BseRI | GAGGAG | 1 cut(s) | 350 |
| BsiSI | CCGG | 1 cut(s) | 635 |
| BslFI | GGGAC | 1 cut(s) | 107 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 492, 581 |
| BsmFI | GGGAC | 1 cut(s) | 107 |
| Bsp1407I | TGTACA | 1 cut(s) | 540 |
| Bsp143I | GATC | 2 cut(s) | 32, 663 |
| BspCNI | CTCAG | 2 cut(s) | 130, 610 |
| BspLI | GGNNCC | 1 cut(s) | 633 |
| BspPI | GGATC | 1 cut(s) | 658 |
| BsrGI | TGTACA | 1 cut(s) | 540 |
| BsrI | ACTGG | 1 cut(s) | 567 |
| BssECI | CCNNGG | 3 cut(s) | 452, 635, 668 |
| BssMI | GATC | 2 cut(s) | 32, 663 |
| BssT1I | CCWWGG | 1 cut(s) | 668 |
| Bst2UI | CCWGG | 1 cut(s) | 453 |
| Bst4CI | ACNGT | 3 cut(s) | 42, 271, 697 |
| BstAUI | TGTACA | 1 cut(s) | 540 |
| BstC8I | GCNNGC | 2 cut(s) | 246, 555 |
| BstDEI | CTNAG | 4 cut(s) | 138, 251, 618, 705 |
| BstF5I | GGATG | 5 cut(s) | 21, 227, 310, 337, 501 |
| BstKTI | GATC | 2 cut(s) | 35, 666 |
| BstMBI | GATC | 2 cut(s) | 32, 663 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 126, 245 |
| BstNI | CCWGG | 1 cut(s) | 453 |
| BstNSI | RCATGY | 2 cut(s) | 248, 557 |
| BstSCI | CCNGG | 2 cut(s) | 451, 634 |
| BstSFI | CTRYAG | 1 cut(s) | 38 |
| BstV2I | GAAGAC | 1 cut(s) | 354 |
| BtsCI | GGATG | 5 cut(s) | 21, 227, 310, 337, 501 |
| BtsIMutI | CAGTG | 2 cut(s) | 135, 702 |
| Cac8I | GCNNGC | 2 cut(s) | 246, 555 |
| Cfr13I | GGNCC | 1 cut(s) | 166 |
| Csp6I | GTAC | 2 cut(s) | 541, 652 |
| CviAII | CATG | 5 cut(s) | 12, 218, 245, 515, 554 |
| CviJI | RGCY | 7 cut(s) | 23, 157, 198, 391, 470, 704, 712 |
| CviKI_1 | RGCY | 7 cut(s) | 23, 157, 198, 391, 470, 704, 712 |
| CviQI | GTAC | 2 cut(s) | 541, 652 |
| DdeI | CTNAG | 4 cut(s) | 138, 251, 618, 705 |
| DpnI | GATC | 2 cut(s) | 34, 665 |
| DpnII | GATC | 2 cut(s) | 32, 663 |
| Eco130I | CCWWGG | 1 cut(s) | 668 |
| Eco47I | GGWCC | 1 cut(s) | 166 |
| EcoRI | GAATTC | 1 cut(s) | 280 |
| EcoRII | CCWGG | 1 cut(s) | 451 |
| EcoT14I | CCWWGG | 1 cut(s) | 668 |
| ErhI | CCWWGG | 1 cut(s) | 668 |
| FaeI | CATG | 5 cut(s) | 15, 221, 248, 518, 557 |
| FaqI | GGGAC | 1 cut(s) | 107 |
| FatI | CATG | 5 cut(s) | 11, 217, 244, 514, 553 |
| FblI | GTMKAC | 1 cut(s) | 458 |
| FokI | GGATG | 5 cut(s) | 28, 214, 317, 344, 508 |
| HapII | CCGG | 1 cut(s) | 635 |
| Hin1II | CATG | 5 cut(s) | 15, 221, 248, 518, 557 |
| HinfI | GANTC | 4 cut(s) | 260, 350, 511, 587 |
| HpaII | CCGG | 1 cut(s) | 635 |
| HphI | GGTGA | 1 cut(s) | 596 |
| Hpy166II | GTNNAC | 1 cut(s) | 459 |
| Hpy188I | TCNGA | 6 cut(s) | 69, 82, 265, 346, 619, 663 |
| Hpy188III | TCNNGA | 2 cut(s) | 401, 434 |
| Hpy8I | GTNNAC | 1 cut(s) | 459 |
| HpyAV | CCTTC | 4 cut(s) | 13, 431, 620, 634 |
| HpyCH4III | ACNGT | 3 cut(s) | 42, 271, 697 |
| HpyCH4V | TGCA | 5 cut(s) | 77, 89, 244, 367, 534 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 126, 245 |
| HpyF3I | CTNAG | 4 cut(s) | 138, 251, 618, 705 |
| Hsp92II | CATG | 5 cut(s) | 15, 221, 248, 518, 557 |
| Kzo9I | GATC | 2 cut(s) | 32, 663 |
| LmnI | GCTCC | 1 cut(s) | 709 |
| LpnPI | CCDG | 5 cut(s) | 414, 438, 465, 580, 648 |
| LweI | GCATC | 3 cut(s) | 86, 543, 550 |
| MalI | GATC | 2 cut(s) | 34, 665 |
| MboI | GATC | 2 cut(s) | 32, 663 |
| MboII | GAAGA | 4 cut(s) | 42, 71, 359, 389 |
| MluCI | AATT | 5 cut(s) | 62, 71, 280, 286, 411 |
| MlyI | GAGTC | 1 cut(s) | 344 |
| MmeI | TCCRAC | 1 cut(s) | 599 |
| MnlI | CCTC | 7 cut(s) | 295, 313, 322, 328, 402, 460, 669 |
| MroXI | GAANNNNTTC | 4 cut(s) | 63, 481, 510, 630 |
| MseI | TTAA | 3 cut(s) | 162, 180, 410 |
| MslI | CAYNNNNRTG | 1 cut(s) | 558 |
| MspI | CCGG | 1 cut(s) | 635 |
| MspR9I | CCNGG | 2 cut(s) | 453, 636 |
| MvaI | CCWGG | 1 cut(s) | 453 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 126, 245 |
| NciI | CCSGG | 1 cut(s) | 636 |
| NdeII | GATC | 2 cut(s) | 32, 663 |
| NlaIII | CATG | 5 cut(s) | 15, 221, 248, 518, 557 |
| NlaIV | GGNNCC | 1 cut(s) | 633 |
| NspI | RCATGY | 2 cut(s) | 248, 557 |
| PaeI | GCATGC | 2 cut(s) | 248, 557 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 350 |
| PdmI | GAANNNNTTC | 4 cut(s) | 63, 481, 510, 630 |
| PfeI | GAWTC | 3 cut(s) | 260, 511, 587 |
| PflFI | GACNNNGTC | 1 cut(s) | 697 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 581 |
| PleI | GAGTC | 1 cut(s) | 344 |
| PpsI | GAGTC | 1 cut(s) | 344 |
| Psp6I | CCWGG | 1 cut(s) | 451 |
| PspGI | CCWGG | 1 cut(s) | 451 |
| PspN4I | GGNNCC | 1 cut(s) | 633 |
| PspPI | GGNCC | 1 cut(s) | 166 |
| PsyI | GACNNNGTC | 1 cut(s) | 697 |
| RsaI | GTAC | 2 cut(s) | 542, 653 |
| RsaNI | GTAC | 2 cut(s) | 541, 652 |
| RseI | CAYNNNNRTG | 1 cut(s) | 558 |
| SaqAI | TTAA | 3 cut(s) | 162, 180, 410 |
| Sau3AI | GATC | 2 cut(s) | 32, 663 |
| Sau96I | GGNCC | 1 cut(s) | 166 |
| SchI | GAGTC | 1 cut(s) | 344 |
| ScrFI | CCNGG | 2 cut(s) | 453, 636 |
| SetI | ASST | 7 cut(s) | 200, 426, 596, 645, 674, 706, 714 |
| SfaNI | GCATC | 3 cut(s) | 86, 543, 550 |
| SfcI | CTRYAG | 1 cut(s) | 38 |
| SinI | GGWCC | 1 cut(s) | 166 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 558 |
| SphI | GCATGC | 2 cut(s) | 248, 557 |
| Sse9I | AATT | 5 cut(s) | 62, 71, 280, 286, 411 |
| StyD4I | CCNGG | 2 cut(s) | 451, 634 |
| StyI | CCWWGG | 1 cut(s) | 668 |
| TaaI | ACNGT | 3 cut(s) | 42, 271, 697 |
| TaqI | TCGA | 3 cut(s) | 273, 353, 692 |
| TasI | AATT | 5 cut(s) | 62, 71, 280, 286, 411 |
| TatI | WGTACW | 1 cut(s) | 540 |
| TfiI | GAWTC | 3 cut(s) | 260, 511, 587 |
| Tru1I | TTAA | 3 cut(s) | 162, 180, 410 |
| Tru9I | TTAA | 3 cut(s) | 162, 180, 410 |
| TscAI | CASTG | 2 cut(s) | 142, 702 |
| TspDTI | ATGAA | 4 cut(s) | 32, 293, 503, 519 |
| TspRI | CASTG | 2 cut(s) | 142, 702 |
| Tth111I | GACNNNGTC | 1 cut(s) | 697 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 581 |
| VpaK11BI | GGWCC | 1 cut(s) | 166 |
| XapI | RAATTY | 3 cut(s) | 62, 71, 280 |
| XceI | RCATGY | 2 cut(s) | 248, 557 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 493 |
| XmiI | GTMKAC | 1 cut(s) | 458 |
| XmnI | GAANNNNTTC | 4 cut(s) | 63, 481, 510, 630 |