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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 435 |
| AciI | CCGC | 1 cut(s) | 366 |
| AclI | AACGTT | 1 cut(s) | 389 |
| AcsI | RAATTY | 1 cut(s) | 134 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 129, 184, 435 |
| AgsI | TTSAA | 4 cut(s) | 13, 74, 238, 424 |
| AluBI | AGCT | 1 cut(s) | 149 |
| AluI | AGCT | 1 cut(s) | 149 |
| AoxI | GGCC | 1 cut(s) | 367 |
| ApoI | RAATTY | 1 cut(s) | 134 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 8 |
| AspLEI | GCGC | 1 cut(s) | 190 |
| AspS9I | GGNCC | 1 cut(s) | 368 |
| AxyI | CCTNAGG | 1 cut(s) | 42 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 111, 144 |
| BccI | CCATC | 2 cut(s) | 147, 352 |
| BciVI | GTATCC | 1 cut(s) | 392 |
| BfmI | CTRYAG | 1 cut(s) | 81 |
| BfuI | GTATCC | 1 cut(s) | 392 |
| BisI | GCNGC | 1 cut(s) | 367 |
| BlsI | GCNGC | 1 cut(s) | 368 |
| BmgT120I | GGNCC | 1 cut(s) | 368 |
| BmsI | GCATC | 2 cut(s) | 160, 475 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 77, 109 |
| BsaJI | CCNNGG | 2 cut(s) | 194, 371 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 129, 184, 435 |
| Bse1I | ACTGG | 1 cut(s) | 403 |
| Bse21I | CCTNAGG | 1 cut(s) | 42 |
| Bse3DI | GCAATG | 2 cut(s) | 321, 495 |
| BseDI | CCNNGG | 2 cut(s) | 194, 371 |
| BseGI | GGATG | 2 cut(s) | 175, 363 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 129, 184, 435 |
| BseMI | GCAATG | 2 cut(s) | 321, 495 |
| BseMII | CTCAG | 3 cut(s) | 33, 48, 108 |
| BseNI | ACTGG | 1 cut(s) | 403 |
| BshFI | GGCC | 1 cut(s) | 369 |
| BslFI | GGGAC | 1 cut(s) | 452 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 129, 184, 435 |
| BsmFI | GGGAC | 1 cut(s) | 452 |
| BsmI | GAATGC | 1 cut(s) | 277 |
| BsnI | GGCC | 1 cut(s) | 369 |
| Bsp19I | CCATGG | 1 cut(s) | 194 |
| BspACI | CCGC | 1 cut(s) | 366 |
| BspANI | GGCC | 1 cut(s) | 369 |
| BspCNI | CTCAG | 3 cut(s) | 34, 49, 107 |
| BsrDI | GCAATG | 2 cut(s) | 321, 495 |
| BsrI | ACTGG | 1 cut(s) | 403 |
| BssECI | CCNNGG | 2 cut(s) | 194, 371 |
| BssT1I | CCWWGG | 2 cut(s) | 194, 371 |
| Bst4CI | ACNGT | 2 cut(s) | 127, 161 |
| Bst6I | CTCTTC | 1 cut(s) | 69 |
| BstC8I | GCNNGC | 1 cut(s) | 175 |
| BstDEI | CTNAG | 4 cut(s) | 42, 57, 94, 231 |
| BstDSI | CCRYGG | 1 cut(s) | 194 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 182 |
| BstF5I | GGATG | 2 cut(s) | 175, 363 |
| BstHHI | GCGC | 1 cut(s) | 190 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 382 |
| BstSFI | CTRYAG | 1 cut(s) | 81 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 410 |
| Bsu36I | CCTNAGG | 1 cut(s) | 42 |
| BsuI | GTATCC | 1 cut(s) | 392 |
| BsuRI | GGCC | 1 cut(s) | 369 |
| BtgI | CCRYGG | 1 cut(s) | 194 |
| BtsCI | GGATG | 2 cut(s) | 175, 363 |
| BtsIMutI | CAGTG | 2 cut(s) | 123, 415 |
| Cac8I | GCNNGC | 1 cut(s) | 175 |
| CfoI | GCGC | 1 cut(s) | 190 |
| Cfr13I | GGNCC | 1 cut(s) | 368 |
| CviAII | CATG | 1 cut(s) | 195 |
| CviJI | RGCY | 4 cut(s) | 80, 149, 177, 369 |
| CviKI_1 | RGCY | 4 cut(s) | 80, 149, 177, 369 |
| DdeI | CTNAG | 4 cut(s) | 42, 57, 94, 231 |
| Eam1104I | CTCTTC | 1 cut(s) | 69 |
| EarI | CTCTTC | 1 cut(s) | 69 |
| Eco130I | CCWWGG | 2 cut(s) | 194, 371 |
| Eco81I | CCTNAGG | 1 cut(s) | 42 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 182 |
| EcoRI | GAATTC | 1 cut(s) | 134 |
| EcoT14I | CCWWGG | 2 cut(s) | 194, 371 |
| ErhI | CCWWGG | 2 cut(s) | 194, 371 |
| FaeI | CATG | 1 cut(s) | 198 |
| FaiI | YATR | 6 cut(s) | 21, 83, 104, 196, 204, 206 |
| FaqI | GGGAC | 1 cut(s) | 452 |
| FatI | CATG | 1 cut(s) | 194 |
| FauNDI | CATATG | 1 cut(s) | 204 |
| Fnu4HI | GCNGC | 1 cut(s) | 367 |
| FokI | GGATG | 2 cut(s) | 182, 370 |
| Fsp4HI | GCNGC | 1 cut(s) | 367 |
| GlaI | GCGC | 1 cut(s) | 189 |
| GluI | GCNGC | 1 cut(s) | 367 |
| HaeIII | GGCC | 1 cut(s) | 369 |
| HhaI | GCGC | 1 cut(s) | 190 |
| Hin1II | CATG | 1 cut(s) | 198 |
| Hin6I | GCGC | 1 cut(s) | 188 |
| HinP1I | GCGC | 1 cut(s) | 188 |
| HincII | GTYRAC | 1 cut(s) | 222 |
| HindII | GTYRAC | 1 cut(s) | 222 |
| HindIII | AAGCTT | 1 cut(s) | 147 |
| HpaI | GTTAAC | 1 cut(s) | 222 |
| Hpy166II | GTNNAC | 1 cut(s) | 222 |
| Hpy188I | TCNGA | 3 cut(s) | 97, 343, 459 |
| Hpy188III | TCNNGA | 6 cut(s) | 41, 110, 143, 155, 238, 326 |
| Hpy8I | GTNNAC | 1 cut(s) | 222 |
| HpyCH4III | ACNGT | 2 cut(s) | 127, 161 |
| HpyCH4IV | ACGT | 2 cut(s) | 100, 389 |
| HpyCH4V | TGCA | 4 cut(s) | 173, 308, 314, 488 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 382 |
| HpyF3I | CTNAG | 4 cut(s) | 42, 57, 94, 231 |
| HpySE526I | ACGT | 2 cut(s) | 100, 389 |
| Hsp92II | CATG | 1 cut(s) | 198 |
| HspAI | GCGC | 1 cut(s) | 188 |
| KspAI | GTTAAC | 1 cut(s) | 222 |
| LmnI | GCTCC | 1 cut(s) | 199 |
| LpnPI | CCDG | 4 cut(s) | 54, 140, 170, 416 |
| LweI | GCATC | 2 cut(s) | 160, 475 |
| MaeII | ACGT | 2 cut(s) | 100, 389 |
| MboII | GAAGA | 2 cut(s) | 86, 125 |
| MluCI | AATT | 3 cut(s) | 61, 134, 209 |
| MmeI | TCCRAC | 1 cut(s) | 195 |
| MnlI | CCTC | 5 cut(s) | 37, 70, 243, 252, 345 |
| MroXI | GAANNNNTTC | 1 cut(s) | 8 |
| MseI | TTAA | 2 cut(s) | 221, 293 |
| Mva1269I | GAATGC | 1 cut(s) | 277 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 382 |
| NcoI | CCATGG | 1 cut(s) | 194 |
| NdeI | CATATG | 1 cut(s) | 204 |
| NlaIII | CATG | 1 cut(s) | 198 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 106 |
| PctI | GAATGC | 1 cut(s) | 277 |
| PdmI | GAANNNNTTC | 1 cut(s) | 8 |
| PflFI | GACNNNGTC | 1 cut(s) | 443 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 435 |
| PkrI | GCNGC | 1 cut(s) | 368 |
| Psp1406I | AACGTT | 1 cut(s) | 389 |
| PspPI | GGNCC | 1 cut(s) | 368 |
| PsyI | GACNNNGTC | 1 cut(s) | 443 |
| SaqAI | TTAA | 2 cut(s) | 221, 293 |
| SatI | GCNGC | 1 cut(s) | 367 |
| Sau96I | GGNCC | 1 cut(s) | 368 |
| SetI | ASST | 5 cut(s) | 103, 151, 254, 356, 392 |
| SfaNI | GCATC | 2 cut(s) | 160, 475 |
| SfcI | CTRYAG | 1 cut(s) | 81 |
| Sse9I | AATT | 3 cut(s) | 61, 134, 209 |
| SsiI | CCGC | 1 cut(s) | 366 |
| StyI | CCWWGG | 2 cut(s) | 194, 371 |
| TaaI | ACNGT | 2 cut(s) | 127, 161 |
| TaiI | ACGT | 2 cut(s) | 103, 392 |
| TasI | AATT | 3 cut(s) | 61, 134, 209 |
| TauI | GCSGC | 1 cut(s) | 369 |
| Tru1I | TTAA | 2 cut(s) | 221, 293 |
| Tru9I | TTAA | 2 cut(s) | 221, 293 |
| TscAI | CASTG | 2 cut(s) | 130, 415 |
| TspDTI | ATGAA | 1 cut(s) | 17 |
| TspRI | CASTG | 2 cut(s) | 130, 415 |
| Tth111I | GACNNNGTC | 1 cut(s) | 443 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 435 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 182 |
| XapI | RAATTY | 1 cut(s) | 134 |
| XmnI | GAANNNNTTC | 1 cut(s) | 8 |