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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 209 |
| AccI | GTMKAC | 1 cut(s) | 117 |
| AcsI | RAATTY | 3 cut(s) | 332, 347, 379 |
| AfaI | GTAC | 1 cut(s) | 461 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 411 |
| AflII | CTTAAG | 1 cut(s) | 598 |
| AflIII | ACRYGT | 1 cut(s) | 122 |
| AgsI | TTSAA | 3 cut(s) | 35, 62, 303 |
| AjiI | CACGTC | 1 cut(s) | 125 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 258, 290 |
| AluBI | AGCT | 5 cut(s) | 360, 369, 418, 578, 606 |
| AluI | AGCT | 5 cut(s) | 360, 369, 418, 578, 606 |
| Alw26I | GTCTC | 1 cut(s) | 50 |
| AoxI | GGCC | 2 cut(s) | 3, 223 |
| ApeKI | GCWGC | 1 cut(s) | 603 |
| ApoI | RAATTY | 3 cut(s) | 332, 347, 379 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 183, 634 |
| AspLEI | GCGC | 1 cut(s) | 404 |
| AspS9I | GGNCC | 1 cut(s) | 4 |
| AsuHPI | GGTGA | 2 cut(s) | 242, 490 |
| BbvCI | CCTCAGC | 1 cut(s) | 149 |
| BbvI | GCAGC | 1 cut(s) | 615 |
| BccI | CCATC | 3 cut(s) | 439, 445, 551 |
| BclI | TGATCA | 1 cut(s) | 337 |
| BcoDI | GTCTC | 1 cut(s) | 50 |
| BfaI | CTAG | 2 cut(s) | 128, 434 |
| BfrI | CTTAAG | 1 cut(s) | 598 |
| BisI | GCNGC | 1 cut(s) | 604 |
| BlsI | GCNGC | 1 cut(s) | 605 |
| BmgBI | CACGTC | 1 cut(s) | 125 |
| BmgT120I | GGNCC | 1 cut(s) | 4 |
| BmiI | GGNNCC | 1 cut(s) | 262 |
| BpmI | CTGGAG | 2 cut(s) | 209, 306 |
| Bpu10I | CCTNAGC | 1 cut(s) | 149 |
| BpuEI | CTTGAG | 1 cut(s) | 567 |
| BsaJI | CCNNGG | 2 cut(s) | 226, 622 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 411 |
| Bse3DI | GCAATG | 1 cut(s) | 558 |
| BseDI | CCNNGG | 2 cut(s) | 226, 622 |
| BseGI | GGATG | 2 cut(s) | 562, 568 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 411 |
| BseMI | GCAATG | 1 cut(s) | 558 |
| BseMII | CTCAG | 3 cut(s) | 93, 163, 419 |
| BseRI | GAGGAG | 2 cut(s) | 5, 570 |
| BseXI | GCAGC | 1 cut(s) | 615 |
| BsgI | GTGCAG | 1 cut(s) | 86 |
| BshFI | GGCC | 2 cut(s) | 5, 225 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 411 |
| BsmAI | GTCTC | 1 cut(s) | 50 |
| BsmBI | CGTCTC | 1 cut(s) | 50 |
| BsnI | GGCC | 2 cut(s) | 5, 225 |
| Bsp143I | GATC | 2 cut(s) | 93, 337 |
| BspANI | GGCC | 2 cut(s) | 5, 225 |
| BspCNI | CTCAG | 3 cut(s) | 94, 162, 420 |
| BspHI | TCATGA | 1 cut(s) | 483 |
| BspLI | GGNNCC | 1 cut(s) | 262 |
| BspTI | CTTAAG | 1 cut(s) | 598 |
| BsrDI | GCAATG | 1 cut(s) | 558 |
| BssECI | CCNNGG | 2 cut(s) | 226, 622 |
| BssMI | GATC | 2 cut(s) | 93, 337 |
| BssT1I | CCWWGG | 1 cut(s) | 226 |
| Bst4CI | ACNGT | 1 cut(s) | 183 |
| Bst6I | CTCTTC | 1 cut(s) | 625 |
| BstAFI | CTTAAG | 1 cut(s) | 598 |
| BstDEI | CTNAG | 4 cut(s) | 49, 102, 149, 428 |
| BstF5I | GGATG | 2 cut(s) | 562, 568 |
| BstHHI | GCGC | 1 cut(s) | 404 |
| BstKTI | GATC | 2 cut(s) | 96, 340 |
| BstMAI | GTCTC | 1 cut(s) | 50 |
| BstMBI | GATC | 2 cut(s) | 93, 337 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 366, 415, 424 |
| BstNSI | RCATGY | 1 cut(s) | 157 |
| BstV1I | GCAGC | 1 cut(s) | 615 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 553 |
| BsuRI | GGCC | 2 cut(s) | 5, 225 |
| BtrI | CACGTC | 1 cut(s) | 125 |
| BtsCI | GGATG | 2 cut(s) | 562, 568 |
| BtsI | GCAGTG | 2 cut(s) | 268, 546 |
| BtsIMutI | CAGTG | 2 cut(s) | 268, 546 |
| CciI | TCATGA | 1 cut(s) | 483 |
| CfoI | GCGC | 1 cut(s) | 404 |
| Cfr13I | GGNCC | 1 cut(s) | 4 |
| Csp6I | GTAC | 1 cut(s) | 460 |
| CviAII | CATG | 4 cut(s) | 154, 406, 484, 538 |
| CviQI | GTAC | 1 cut(s) | 460 |
| DdeI | CTNAG | 4 cut(s) | 49, 102, 149, 428 |
| DpnI | GATC | 2 cut(s) | 95, 339 |
| DpnII | GATC | 2 cut(s) | 93, 337 |
| DraI | TTTAAA | 1 cut(s) | 514 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 209 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 209 |
| Eam1104I | CTCTTC | 1 cut(s) | 625 |
| EarI | CTCTTC | 1 cut(s) | 625 |
| Eco130I | CCWWGG | 1 cut(s) | 226 |
| Eco147I | AGGCCT | 1 cut(s) | 225 |
| EcoT14I | CCWWGG | 1 cut(s) | 226 |
| ErhI | CCWWGG | 1 cut(s) | 226 |
| Esp3I | CGTCTC | 1 cut(s) | 50 |
| FaeI | CATG | 4 cut(s) | 157, 409, 487, 541 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 622, 654 |
| FatI | CATG | 4 cut(s) | 153, 405, 483, 537 |
| FbaI | TGATCA | 1 cut(s) | 337 |
| FblI | GTMKAC | 1 cut(s) | 117 |
| Fnu4HI | GCNGC | 1 cut(s) | 604 |
| FokI | GGATG | 2 cut(s) | 569, 575 |
| Fsp4HI | GCNGC | 1 cut(s) | 604 |
| FspBI | CTAG | 2 cut(s) | 128, 434 |
| GlaI | GCGC | 1 cut(s) | 403 |
| GluI | GCNGC | 1 cut(s) | 604 |
| GsuI | CTGGAG | 2 cut(s) | 209, 306 |
| HaeIII | GGCC | 2 cut(s) | 5, 225 |
| HhaI | GCGC | 1 cut(s) | 404 |
| Hin1II | CATG | 4 cut(s) | 157, 409, 487, 541 |
| Hin6I | GCGC | 1 cut(s) | 402 |
| HinP1I | GCGC | 1 cut(s) | 402 |
| HincII | GTYRAC | 1 cut(s) | 214 |
| HindII | GTYRAC | 1 cut(s) | 214 |
| HindIII | AAGCTT | 1 cut(s) | 358 |
| HinfI | GANTC | 4 cut(s) | 374, 430, 487, 635 |
| HphI | GGTGA | 2 cut(s) | 242, 490 |
| Hpy166II | GTNNAC | 2 cut(s) | 118, 214 |
| Hpy188I | TCNGA | 2 cut(s) | 79, 626 |
| Hpy188III | TCNNGA | 3 cut(s) | 97, 188, 484 |
| Hpy8I | GTNNAC | 2 cut(s) | 118, 214 |
| HpyAV | CCTTC | 3 cut(s) | 215, 383, 512 |
| HpyCH4III | ACNGT | 1 cut(s) | 183 |
| HpyCH4IV | ACGT | 1 cut(s) | 124 |
| HpyCH4V | TGCA | 5 cut(s) | 67, 273, 409, 531, 551 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 366, 415, 424 |
| HpyF3I | CTNAG | 4 cut(s) | 49, 102, 149, 428 |
| HpySE526I | ACGT | 1 cut(s) | 124 |
| Hsp92II | CATG | 4 cut(s) | 157, 409, 487, 541 |
| HspAI | GCGC | 1 cut(s) | 402 |
| Ksp22I | TGATCA | 1 cut(s) | 337 |
| Kzo9I | GATC | 2 cut(s) | 93, 337 |
| LmnI | GCTCC | 2 cut(s) | 260, 583 |
| LpnPI | CCDG | 8 cut(s) | 82, 119, 173, 189, 312, 336, 397, 448 |
| Lsp1109I | GCAGC | 1 cut(s) | 615 |
| MaeI | CTAG | 2 cut(s) | 128, 434 |
| MaeII | ACGT | 1 cut(s) | 124 |
| MaeIII | GTNAC | 3 cut(s) | 23, 136, 316 |
| MalI | GATC | 2 cut(s) | 95, 339 |
| MboI | GATC | 2 cut(s) | 93, 337 |
| MboII | GAAGA | 3 cut(s) | 122, 639, 642 |
| MluCI | AATT | 5 cut(s) | 35, 162, 332, 347, 379 |
| MlyI | GAGTC | 2 cut(s) | 368, 439 |
| MmeI | TCCRAC | 2 cut(s) | 238, 377 |
| MnlI | CCTC | 7 cut(s) | 17, 26, 66, 158, 246, 591, 632 |
| MroXI | GAANNNNTTC | 2 cut(s) | 183, 634 |
| MseI | TTAA | 4 cut(s) | 161, 362, 513, 599 |
| MslI | CAYNNNNRTG | 1 cut(s) | 551 |
| MspCI | CTTAAG | 1 cut(s) | 598 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 366, 415, 424 |
| NdeII | GATC | 2 cut(s) | 93, 337 |
| NlaIII | CATG | 4 cut(s) | 157, 409, 487, 541 |
| NlaIV | GGNNCC | 1 cut(s) | 262 |
| NspI | RCATGY | 1 cut(s) | 157 |
| PagI | TCATGA | 1 cut(s) | 483 |
| PceI | AGGCCT | 1 cut(s) | 225 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 15 |
| PdmI | GAANNNNTTC | 2 cut(s) | 183, 634 |
| PfeI | GAWTC | 2 cut(s) | 487, 635 |
| PkrI | GCNGC | 1 cut(s) | 605 |
| PleI | GAGTC | 2 cut(s) | 368, 438 |
| PpsI | GAGTC | 2 cut(s) | 368, 438 |
| PspN4I | GGNNCC | 1 cut(s) | 262 |
| PspPI | GGNCC | 1 cut(s) | 4 |
| RsaI | GTAC | 1 cut(s) | 461 |
| RsaNI | GTAC | 1 cut(s) | 460 |
| RseI | CAYNNNNRTG | 1 cut(s) | 551 |
| SaqAI | TTAA | 4 cut(s) | 161, 362, 513, 599 |
| SatI | GCNGC | 1 cut(s) | 604 |
| Sau3AI | GATC | 2 cut(s) | 93, 337 |
| Sau96I | GGNCC | 1 cut(s) | 4 |
| SchI | GAGTC | 2 cut(s) | 368, 439 |
| SetI | ASST | 9 cut(s) | 77, 127, 150, 246, 362, 371, 420, 580, 608 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 551 |
| SmlI | CTYRAG | 2 cut(s) | 582, 598 |
| SmoI | CTYRAG | 2 cut(s) | 582, 598 |
| Sse9I | AATT | 5 cut(s) | 35, 162, 332, 347, 379 |
| SseBI | AGGCCT | 1 cut(s) | 225 |
| SspMI | CTAG | 2 cut(s) | 128, 434 |
| StuI | AGGCCT | 1 cut(s) | 225 |
| StyI | CCWWGG | 1 cut(s) | 226 |
| TaaI | ACNGT | 1 cut(s) | 183 |
| TaiI | ACGT | 1 cut(s) | 127 |
| TasI | AATT | 5 cut(s) | 35, 162, 332, 347, 379 |
| TatI | WGTACW | 1 cut(s) | 459 |
| TfiI | GAWTC | 2 cut(s) | 487, 635 |
| Tru1I | TTAA | 4 cut(s) | 161, 362, 513, 599 |
| Tru9I | TTAA | 4 cut(s) | 161, 362, 513, 599 |
| TscAI | CASTG | 2 cut(s) | 275, 553 |
| TseI | GCWGC | 1 cut(s) | 603 |
| TspDTI | ATGAA | 2 cut(s) | 494, 500 |
| TspGWI | ACGGA | 1 cut(s) | 32 |
| TspRI | CASTG | 2 cut(s) | 275, 553 |
| Vha464I | CTTAAG | 1 cut(s) | 598 |
| XapI | RAATTY | 3 cut(s) | 332, 347, 379 |
| XceI | RCATGY | 1 cut(s) | 157 |
| XmiI | GTMKAC | 1 cut(s) | 117 |
| XmnI | GAANNNNTTC | 2 cut(s) | 183, 634 |
| XspI | CTAG | 2 cut(s) | 128, 434 |