Domain of unknown function (DUF4218)
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Transpos_assoc | PF13963 | 13 - 88 | 3.4e-18 | Transposase-associated domain |
| Transposase_21 | PF02992 | 299 - 506 | 3.8e-100 | Transposase family tnp2 |
| DUF4218 | PF13960 | 692 - 804 | 7.2e-51 | Domain of unknown function (DUF4218) |
| DUF4216 | PF13952 | 965 - 1041 | 3.7e-19 | Domain of unknown function (DUF4216) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 3000, 3096 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 1962 |
| AatII | GACGTC | 1 cut(s) | 1801 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2480 |
| AccI | GTMKAC | 1 cut(s) | 1858 |
| AccII | CGCG | 1 cut(s) | 181 |
| AccIII | TCCGGA | 1 cut(s) | 2837 |
| AciI | CCGC | 4 cut(s) | 113, 179, 1252, 1567 |
| AclWI | GGATC | 2 cut(s) | 135, 3197 |
| AcsI | RAATTY | 5 cut(s) | 1240, 1297, 1880, 2154, 2266 |
| AcuI | CTGAAG | 4 cut(s) | 842, 942, 1344, 2331 |
| AcyI | GRCGYC | 1 cut(s) | 1798 |
| AdeI | CACNNNGTG | 1 cut(s) | 3030 |
| AfaI | GTAC | 8 cut(s) | 464, 475, 525, 1315, 1325, 1628, 2903, 3123 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 1292, 2244, 2480 |
| AflIII | ACRYGT | 4 cut(s) | 143, 351, 2737, 3142 |
| AhlI | ACTAGT | 1 cut(s) | 1031 |
| AjnI | CCWGG | 3 cut(s) | 1126, 1141, 1534 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 2205, 2237 |
| Alw21I | GWGCWC | 3 cut(s) | 1031, 1141, 2039 |
| Alw26I | GTCTC | 4 cut(s) | 835, 1642, 1997, 3133 |
| Alw44I | GTGCAC | 1 cut(s) | 2035 |
| AlwI | GGATC | 2 cut(s) | 135, 3197 |
| Ama87I | CYCGRG | 2 cut(s) | 466, 1134 |
| Aor13HI | TCCGGA | 1 cut(s) | 2837 |
| AoxI | GGCC | 3 cut(s) | 371, 1577, 2166 |
| ApaLI | GTGCAC | 1 cut(s) | 2035 |
| ApeKI | GCWGC | 4 cut(s) | 110, 962, 1570, 1907 |
| ApoI | RAATTY | 5 cut(s) | 1240, 1297, 1880, 2154, 2266 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 422, 454, 2455, 2487 |
| AseI | ATTAAT | 3 cut(s) | 1175, 1502, 3015 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1102, 2637 |
| AspLEI | GCGC | 2 cut(s) | 771, 798 |
| AspS9I | GGNCC | 6 cut(s) | 371, 1130, 1577, 1596, 2228, 2503 |
| AsuC2I | CCSGG | 2 cut(s) | 467, 468 |
| AsuHPI | GGTGA | 3 cut(s) | 59, 73, 2453 |
| AvaI | CYCGRG | 2 cut(s) | 466, 1134 |
| AvaII | GGWCC | 4 cut(s) | 1130, 1596, 2228, 2503 |
| BaeGI | GKGCMC | 1 cut(s) | 2039 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 2885, 2917 |
| BauI | CACGAG | 1 cut(s) | 2208 |
| BbsI | GAAGAC | 2 cut(s) | 2914, 3420 |
| Bbv12I | GWGCWC | 3 cut(s) | 1031, 1141, 2039 |
| BbvI | GCAGC | 4 cut(s) | 97, 949, 1582, 1894 |
| BceAI | ACGGC | 2 cut(s) | 864, 920 |
| BciT130I | CCWGG | 3 cut(s) | 1128, 1143, 1536 |
| BciVI | GTATCC | 2 cut(s) | 960, 2262 |
| BclI | TGATCA | 1 cut(s) | 1417 |
| BcnI | CCSGG | 2 cut(s) | 467, 468 |
| BcoDI | GTCTC | 4 cut(s) | 835, 1642, 1997, 3133 |
| BcuI | ACTAGT | 1 cut(s) | 1031 |
| BfaI | CTAG | 7 cut(s) | 1032, 1058, 1476, 1830, 2667, 2717, 3009 |
| BfmI | CTRYAG | 3 cut(s) | 963, 996, 1918 |
| BfuI | GTATCC | 2 cut(s) | 960, 2262 |
| BglII | AGATCT | 2 cut(s) | 1558, 2791 |
| BisI | GCNGC | 6 cut(s) | 111, 179, 963, 1568, 1571, 1908 |
| BlsI | GCNGC | 6 cut(s) | 112, 180, 964, 1569, 1572, 1909 |
| BmcAI | AGTACT | 2 cut(s) | 1315, 1628 |
| Bme1390I | CCNGG | 5 cut(s) | 467, 468, 1128, 1143, 1536 |
| Bme18I | GGWCC | 4 cut(s) | 1130, 1596, 2228, 2503 |
| BmeT110I | CYCGRG | 2 cut(s) | 466, 1134 |
| BmgT120I | GGNCC | 6 cut(s) | 371, 1130, 1577, 1596, 2228, 2503 |
| BmrFI | CCNGG | 5 cut(s) | 467, 468, 1128, 1143, 1536 |
| BmsI | GCATC | 8 cut(s) | 592, 605, 617, 916, 1656, 1798, 2683, 3160 |
| BpiI | GAAGAC | 2 cut(s) | 2914, 3420 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1640 |
| BpuEI | CTTGAG | 1 cut(s) | 2555 |
| BpuMI | CCSGG | 2 cut(s) | 467, 468 |
| BsaAI | YACGTR | 3 cut(s) | 203, 2738, 3030 |
| BsaBI | GATNNNNATC | 3 cut(s) | 1161, 2913, 3000 |
| BsaHI | GRCGYC | 1 cut(s) | 1798 |
| BsaJI | CCNNGG | 2 cut(s) | 466, 1079 |
| BsaWI | WCCGGW | 3 cut(s) | 2505, 2728, 2837 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 1420, 1450, 1980, 2010, 2217, 2247 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 1292, 2244, 2480 |
| Bse118I | RCCGGY | 1 cut(s) | 2164 |
| Bse1I | ACTGG | 5 cut(s) | 1634, 2505, 2758, 2854, 3116 |
| Bse3DI | GCAATG | 3 cut(s) | 173, 1115, 3388 |
| Bse8I | GATNNNNATC | 3 cut(s) | 1161, 2913, 3000 |
| BseAI | TCCGGA | 1 cut(s) | 2837 |
| BseBI | CCWGG | 3 cut(s) | 1128, 1143, 1536 |
| BseDI | CCNNGG | 2 cut(s) | 466, 1079 |
| BseJI | GATNNNNATC | 3 cut(s) | 1161, 2913, 3000 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 1292, 2244, 2480 |
| BseMI | GCAATG | 3 cut(s) | 173, 1115, 3388 |
| BseMII | CTCAG | 1 cut(s) | 1807 |
| BseNI | ACTGG | 5 cut(s) | 1634, 2505, 2758, 2854, 3116 |
| BseRI | GAGGAG | 6 cut(s) | 413, 959, 1461, 1985, 2567, 2992 |
| BseSI | GKGCMC | 1 cut(s) | 2039 |
| BseXI | GCAGC | 4 cut(s) | 97, 949, 1582, 1894 |
| BsgI | GTGCAG | 1 cut(s) | 2025 |
| Bsh1236I | CGCG | 1 cut(s) | 181 |
| BshFI | GGCC | 3 cut(s) | 373, 1579, 2168 |
| BsiHKAI | GWGCWC | 3 cut(s) | 1031, 1141, 2039 |
| BsiHKCI | CYCGRG | 2 cut(s) | 466, 1134 |
| BsiSI | CCGG | 6 cut(s) | 467, 2165, 2506, 2729, 2838, 3311 |
| BslFI | GGGAC | 1 cut(s) | 2981 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 1292, 2244, 2480 |
| BsmAI | GTCTC | 4 cut(s) | 835, 1642, 1997, 3133 |
| BsmBI | CGTCTC | 1 cut(s) | 1997 |
| BsmFI | GGGAC | 1 cut(s) | 2981 |
| BsnI | GGCC | 3 cut(s) | 373, 1579, 2168 |
| BsoBI | CYCGRG | 2 cut(s) | 466, 1134 |
| Bsp1286I | GDGCHC | 3 cut(s) | 1031, 1141, 2039 |
| Bsp13I | TCCGGA | 1 cut(s) | 2837 |
| Bsp1407I | TGTACA | 1 cut(s) | 473 |
| Bsp143I | GATC | 7 cut(s) | 127, 1417, 1513, 1558, 2791, 2800, 3202 |
| BspACI | CCGC | 4 cut(s) | 113, 179, 1252, 1567 |
| BspANI | GGCC | 3 cut(s) | 373, 1579, 2168 |
| BspCNI | CTCAG | 1 cut(s) | 1806 |
| BspEI | TCCGGA | 1 cut(s) | 2837 |
| BspFNI | CGCG | 1 cut(s) | 181 |
| BspHI | TCATGA | 5 cut(s) | 130, 1420, 1582, 1966, 2860 |
| BspMAI | CTGCAG | 1 cut(s) | 967 |
| BspPI | GGATC | 2 cut(s) | 135, 3197 |
| BsrDI | GCAATG | 3 cut(s) | 173, 1115, 3388 |
| BsrFI | RCCGGY | 1 cut(s) | 2164 |
| BsrGI | TGTACA | 1 cut(s) | 473 |
| BsrI | ACTGG | 5 cut(s) | 1634, 2505, 2758, 2854, 3116 |
| BssAI | RCCGGY | 1 cut(s) | 2164 |
| BssECI | CCNNGG | 2 cut(s) | 466, 1079 |
| BssMI | GATC | 7 cut(s) | 127, 1417, 1513, 1558, 2791, 2800, 3202 |
| BssNI | GRCGYC | 1 cut(s) | 1798 |
| BssSI | CACGAG | 1 cut(s) | 2208 |
| BssT1I | CCWWGG | 1 cut(s) | 1079 |
| Bst2BI | CACGAG | 1 cut(s) | 2208 |
| Bst2UI | CCWGG | 3 cut(s) | 1128, 1143, 1536 |
| Bst4CI | ACNGT | 3 cut(s) | 89, 1451, 2549 |
| Bst6I | CTCTTC | 4 cut(s) | 818, 885, 2628, 3174 |
| BstACI | GRCGYC | 1 cut(s) | 1798 |
| BstAUI | TGTACA | 1 cut(s) | 473 |
| BstBAI | YACGTR | 3 cut(s) | 203, 2738, 3030 |
| BstC8I | GCNNGC | 4 cut(s) | 406, 673, 993, 1254 |
| BstDEI | CTNAG | 5 cut(s) | 1317, 1640, 1793, 2882, 2905 |
| BstFNI | CGCG | 1 cut(s) | 181 |
| BstHHI | GCGC | 2 cut(s) | 771, 798 |
| BstKTI | GATC | 7 cut(s) | 130, 1420, 1516, 1561, 2794, 2803, 3205 |
| BstMAI | GTCTC | 4 cut(s) | 835, 1642, 1997, 3133 |
| BstMBI | GATC | 7 cut(s) | 127, 1417, 1513, 1558, 2791, 2800, 3202 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 546, 1054, 1576, 1585, 3065 |
| BstNI | CCWGG | 3 cut(s) | 1128, 1143, 1536 |
| BstNSI | RCATGY | 7 cut(s) | 355, 518, 671, 675, 1260, 1673, 3146 |
| BstSCI | CCNGG | 5 cut(s) | 465, 466, 1126, 1141, 1534 |
| BstSFI | CTRYAG | 3 cut(s) | 963, 996, 1918 |
| BstSLI | GKGCMC | 1 cut(s) | 2039 |
| BstSNI | TACGTA | 1 cut(s) | 203 |
| BstUI | CGCG | 1 cut(s) | 181 |
| BstV1I | GCAGC | 4 cut(s) | 97, 949, 1582, 1894 |
| BstV2I | GAAGAC | 2 cut(s) | 2914, 3420 |
| BstX2I | RGATCY | 2 cut(s) | 1558, 2791 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2438 |
| BstYI | RGATCY | 2 cut(s) | 1558, 2791 |
| BsuI | GTATCC | 2 cut(s) | 960, 2262 |
| BsuRI | GGCC | 3 cut(s) | 373, 1579, 2168 |
| BtgZI | GCGATG | 1 cut(s) | 594 |
| BtsI | GCAGTG | 1 cut(s) | 2037 |
| BtsIMutI | CAGTG | 6 cut(s) | 2037, 2457, 2751, 2847, 3109, 3257 |
| Cac8I | GCNNGC | 4 cut(s) | 406, 673, 993, 1254 |
| CciI | TCATGA | 5 cut(s) | 130, 1420, 1582, 1966, 2860 |
| CfoI | GCGC | 2 cut(s) | 771, 798 |
| Cfr10I | RCCGGY | 1 cut(s) | 2164 |
| Cfr13I | GGNCC | 6 cut(s) | 371, 1130, 1577, 1596, 2228, 2503 |
| Cfr9I | CCCGGG | 1 cut(s) | 466 |
| CseI | GACGC | 1 cut(s) | 170 |
| CsiI | ACCWGGT | 2 cut(s) | 1126, 1534 |
| Csp6I | GTAC | 8 cut(s) | 463, 474, 524, 1314, 1324, 1627, 2902, 3122 |
| CviQI | GTAC | 8 cut(s) | 463, 474, 524, 1314, 1324, 1627, 2902, 3122 |
| DdeI | CTNAG | 5 cut(s) | 1317, 1640, 1793, 2882, 2905 |
| DpnI | GATC | 7 cut(s) | 129, 1419, 1515, 1560, 2793, 2802, 3204 |
| DpnII | GATC | 7 cut(s) | 127, 1417, 1513, 1558, 2791, 2800, 3202 |
| DraI | TTTAAA | 3 cut(s) | 160, 504, 2091 |
| DraIII | CACNNNGTG | 1 cut(s) | 3030 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1962 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1962 |
| Eam1104I | CTCTTC | 4 cut(s) | 818, 885, 2628, 3174 |
| EarI | CTCTTC | 4 cut(s) | 818, 885, 2628, 3174 |
| Eco105I | TACGTA | 1 cut(s) | 203 |
| Eco130I | CCWWGG | 1 cut(s) | 1079 |
| Eco47I | GGWCC | 4 cut(s) | 1130, 1596, 2228, 2503 |
| Eco57I | CTGAAG | 4 cut(s) | 842, 942, 1344, 2331 |
| Eco88I | CYCGRG | 2 cut(s) | 466, 1134 |
| EcoO109I | RGGNCCY | 2 cut(s) | 371, 2228 |
| EcoRII | CCWGG | 3 cut(s) | 1126, 1141, 1534 |
| EcoT14I | CCWWGG | 1 cut(s) | 1079 |
| EcoT22I | ATGCAT | 4 cut(s) | 175, 516, 673, 1671 |
| ErhI | CCWWGG | 1 cut(s) | 1079 |
| Esp3I | CGTCTC | 1 cut(s) | 1997 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 2205, 2237, 3258, 3290 |
| FaqI | GGGAC | 1 cut(s) | 2981 |
| FauI | CCCGC | 1 cut(s) | 1245 |
| FbaI | TGATCA | 1 cut(s) | 1417 |
| FblI | GTMKAC | 1 cut(s) | 1858 |
| Fnu4HI | GCNGC | 6 cut(s) | 111, 179, 963, 1568, 1571, 1908 |
| Fsp4HI | GCNGC | 6 cut(s) | 111, 179, 963, 1568, 1571, 1908 |
| FspBI | CTAG | 7 cut(s) | 1032, 1058, 1476, 1830, 2667, 2717, 3009 |
| GlaI | GCGC | 2 cut(s) | 770, 797 |
| GluI | GCNGC | 6 cut(s) | 111, 179, 963, 1568, 1571, 1908 |
| HaeIII | GGCC | 3 cut(s) | 373, 1579, 2168 |
| HapII | CCGG | 6 cut(s) | 467, 2165, 2506, 2729, 2838, 3311 |
| HgaI | GACGC | 1 cut(s) | 170 |
| HhaI | GCGC | 2 cut(s) | 771, 798 |
| Hin1I | GRCGYC | 1 cut(s) | 1798 |
| Hin6I | GCGC | 2 cut(s) | 769, 796 |
| HinP1I | GCGC | 2 cut(s) | 769, 796 |
| HindIII | AAGCTT | 4 cut(s) | 547, 1329, 1637, 2705 |
| HinfI | GANTC | 4 cut(s) | 578, 659, 917, 2957 |
| HpaII | CCGG | 6 cut(s) | 467, 2165, 2506, 2729, 2838, 3311 |
| HphI | GGTGA | 3 cut(s) | 59, 73, 2453 |
| Hpy166II | GTNNAC | 9 cut(s) | 1269, 1522, 1859, 1930, 2037, 2188, 2726, 3223, 3337 |
| Hpy188I | TCNGA | 5 cut(s) | 922, 1363, 1796, 2101, 2133 |
| Hpy8I | GTNNAC | 9 cut(s) | 1269, 1522, 1859, 1930, 2037, 2188, 2726, 3223, 3337 |
| Hpy99I | CGWCG | 1 cut(s) | 2957 |
| HpyAV | CCTTC | 5 cut(s) | 584, 1425, 1774, 2306, 2503 |
| HpyCH4III | ACNGT | 3 cut(s) | 89, 1451, 2549 |
| HpyCH4IV | ACGT | 7 cut(s) | 145, 202, 1224, 1798, 1990, 2737, 3029 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 546, 1054, 1576, 1585, 3065 |
| HpyF3I | CTNAG | 5 cut(s) | 1317, 1640, 1793, 2882, 2905 |
| HpySE526I | ACGT | 7 cut(s) | 145, 202, 1224, 1798, 1990, 2737, 3029 |
| Hsp92I | GRCGYC | 1 cut(s) | 1798 |
| HspAI | GCGC | 2 cut(s) | 769, 796 |
| Kpn2I | TCCGGA | 1 cut(s) | 2837 |
| Ksp22I | TGATCA | 1 cut(s) | 1417 |
| Kzo9I | GATC | 7 cut(s) | 127, 1417, 1513, 1558, 2791, 2800, 3202 |
| LmnI | GCTCC | 2 cut(s) | 537, 3363 |
| Lsp1109I | GCAGC | 4 cut(s) | 97, 949, 1582, 1894 |
| LweI | GCATC | 8 cut(s) | 592, 605, 617, 916, 1656, 1798, 2683, 3160 |
| MabI | ACCWGGT | 2 cut(s) | 1126, 1534 |
| MaeI | CTAG | 7 cut(s) | 1032, 1058, 1476, 1830, 2667, 2717, 3009 |
| MaeII | ACGT | 7 cut(s) | 145, 202, 1224, 1798, 1990, 2737, 3029 |
| MaeIII | GTNAC | 4 cut(s) | 1385, 2233, 2290, 2350 |
| MalI | GATC | 7 cut(s) | 129, 1419, 1515, 1560, 2793, 2802, 3204 |
| MboI | GATC | 7 cut(s) | 127, 1417, 1513, 1558, 2791, 2800, 3202 |
| MfeI | CAATTG | 1 cut(s) | 3134 |
| MflI | RGATCY | 2 cut(s) | 1558, 2791 |
| MhlI | GDGCHC | 3 cut(s) | 1031, 1141, 2039 |
| MlyI | GAGTC | 1 cut(s) | 572 |
| MmeI | TCCRAC | 4 cut(s) | 23, 515, 1692, 2092 |
| Mph1103I | ATGCAT | 4 cut(s) | 175, 516, 673, 1671 |
| MroI | TCCGGA | 1 cut(s) | 2837 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1102, 2637 |
| MslI | CAYNNNNRTG | 4 cut(s) | 1502, 2532, 2583, 3297 |
| MspA1I | CMGCKG | 1 cut(s) | 914 |
| MspI | CCGG | 6 cut(s) | 467, 2165, 2506, 2729, 2838, 3311 |
| MspR9I | CCNGG | 5 cut(s) | 467, 468, 1128, 1143, 1536 |
| MunI | CAATTG | 1 cut(s) | 3134 |
| MvaI | CCWGG | 3 cut(s) | 1128, 1143, 1536 |
| MvnI | CGCG | 1 cut(s) | 181 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 546, 1054, 1576, 1585, 3065 |
| NciI | CCSGG | 2 cut(s) | 467, 468 |
| NdeII | GATC | 7 cut(s) | 127, 1417, 1513, 1558, 2791, 2800, 3202 |
| NmeAIII | GCCGAG | 1 cut(s) | 768 |
| NsiI | ATGCAT | 4 cut(s) | 175, 516, 673, 1671 |
| NspI | RCATGY | 7 cut(s) | 355, 518, 671, 675, 1260, 1673, 3146 |
| PaeI | GCATGC | 1 cut(s) | 675 |
| PaeR7I | CTCGAG | 1 cut(s) | 1134 |
| PagI | TCATGA | 5 cut(s) | 130, 1420, 1582, 1966, 2860 |
| PciI | ACATGT | 2 cut(s) | 351, 3142 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1102, 2637 |
| PfeI | GAWTC | 3 cut(s) | 659, 917, 2957 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2480 |
| PkrI | GCNGC | 6 cut(s) | 112, 180, 964, 1569, 1572, 1909 |
| PleI | GAGTC | 1 cut(s) | 572 |
| PpsI | GAGTC | 1 cut(s) | 572 |
| Ppu21I | YACGTR | 3 cut(s) | 203, 2738, 3030 |
| PpuMI | RGGWCCY | 1 cut(s) | 2228 |
| PscI | ACATGT | 2 cut(s) | 351, 3142 |
| PshBI | ATTAAT | 3 cut(s) | 1175, 1502, 3015 |
| PsiI | TTATAA | 2 cut(s) | 3000, 3096 |
| Psp5II | RGGWCCY | 1 cut(s) | 2228 |
| Psp6I | CCWGG | 3 cut(s) | 1126, 1141, 1534 |
| PspGI | CCWGG | 3 cut(s) | 1126, 1141, 1534 |
| PspPI | GGNCC | 6 cut(s) | 371, 1130, 1577, 1596, 2228, 2503 |
| PspPPI | RGGWCCY | 1 cut(s) | 2228 |
| PspXI | VCTCGAGB | 1 cut(s) | 1134 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 3036, 3068 |
| PstI | CTGCAG | 1 cut(s) | 967 |
| PsuI | RGATCY | 2 cut(s) | 1558, 2791 |
| PvuII | CAGCTG | 1 cut(s) | 914 |
| RsaI | GTAC | 8 cut(s) | 464, 475, 525, 1315, 1325, 1628, 2903, 3123 |
| RsaNI | GTAC | 8 cut(s) | 463, 474, 524, 1314, 1324, 1627, 2902, 3122 |
| RseI | CAYNNNNRTG | 4 cut(s) | 1502, 2532, 2583, 3297 |
| SatI | GCNGC | 6 cut(s) | 111, 179, 963, 1568, 1571, 1908 |
| Sau3AI | GATC | 7 cut(s) | 127, 1417, 1513, 1558, 2791, 2800, 3202 |
| Sau96I | GGNCC | 6 cut(s) | 371, 1130, 1577, 1596, 2228, 2503 |
| ScaI | AGTACT | 2 cut(s) | 1315, 1628 |
| SchI | GAGTC | 1 cut(s) | 572 |
| ScrFI | CCNGG | 5 cut(s) | 467, 468, 1128, 1143, 1536 |
| SduI | GDGCHC | 3 cut(s) | 1031, 1141, 2039 |
| SexAI | ACCWGGT | 2 cut(s) | 1126, 1534 |
| SfaNI | GCATC | 8 cut(s) | 592, 605, 617, 916, 1656, 1798, 2683, 3160 |
| SfcI | CTRYAG | 3 cut(s) | 963, 996, 1918 |
| Sfr274I | CTCGAG | 1 cut(s) | 1134 |
| SinI | GGWCC | 4 cut(s) | 1130, 1596, 2228, 2503 |
| SlaI | CTCGAG | 1 cut(s) | 1134 |
| SmaI | CCCGGG | 1 cut(s) | 468 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 1502, 2532, 2583, 3297 |
| SmlI | CTYRAG | 2 cut(s) | 1134, 2570 |
| SmoI | CTYRAG | 2 cut(s) | 1134, 2570 |
| SnaBI | TACGTA | 1 cut(s) | 203 |
| SpeI | ACTAGT | 1 cut(s) | 1031 |
| SphI | GCATGC | 1 cut(s) | 675 |
| SsiI | CCGC | 4 cut(s) | 113, 179, 1252, 1567 |
| SspI | AATATT | 3 cut(s) | 556, 1657, 3331 |
| SspMI | CTAG | 7 cut(s) | 1032, 1058, 1476, 1830, 2667, 2717, 3009 |
| StyD4I | CCNGG | 5 cut(s) | 465, 466, 1126, 1141, 1534 |
| StyI | CCWWGG | 1 cut(s) | 1079 |
| TaaI | ACNGT | 3 cut(s) | 89, 1451, 2549 |
| TaiI | ACGT | 7 cut(s) | 148, 205, 1227, 1801, 1993, 2740, 3032 |
| TaqI | TCGA | 9 cut(s) | 839, 973, 1135, 1399, 1938, 2305, 2776, 2806, 3262 |
| TatI | WGTACW | 4 cut(s) | 473, 1313, 1626, 2901 |
| TauI | GCSGC | 2 cut(s) | 181, 1570 |
| TfiI | GAWTC | 3 cut(s) | 659, 917, 2957 |
| TscAI | CASTG | 6 cut(s) | 2044, 2457, 2758, 2854, 3116, 3257 |
| TseI | GCWGC | 4 cut(s) | 110, 962, 1570, 1907 |
| TspGWI | ACGGA | 2 cut(s) | 2422, 3077 |
| TspMI | CCCGGG | 1 cut(s) | 466 |
| TspRI | CASTG | 6 cut(s) | 2044, 2457, 2758, 2854, 3116, 3257 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2480 |
| VneI | GTGCAC | 1 cut(s) | 2035 |
| VpaK11BI | GGWCC | 4 cut(s) | 1130, 1596, 2228, 2503 |
| VspI | ATTAAT | 3 cut(s) | 1175, 1502, 3015 |
| XapI | RAATTY | 5 cut(s) | 1240, 1297, 1880, 2154, 2266 |
| XceI | RCATGY | 7 cut(s) | 355, 518, 671, 675, 1260, 1673, 3146 |
| XhoI | CTCGAG | 1 cut(s) | 1134 |
| XmaI | CCCGGG | 1 cut(s) | 466 |
| XmiI | GTMKAC | 1 cut(s) | 1858 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1102, 2637 |
| XspI | CTAG | 7 cut(s) | 1032, 1058, 1476, 1830, 2667, 2717, 3009 |
| ZraI | GACGTC | 1 cut(s) | 1799 |
| ZrmI | AGTACT | 2 cut(s) | 1315, 1628 |
| Zsp2I | ATGCAT | 4 cut(s) | 175, 516, 673, 1671 |