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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 46 |
| AclWI | GGATC | 1 cut(s) | 194 |
| AgsI | TTSAA | 4 cut(s) | 11, 28, 197, 392 |
| AluBI | AGCT | 3 cut(s) | 39, 167, 268 |
| AluI | AGCT | 3 cut(s) | 39, 167, 268 |
| AlwI | GGATC | 1 cut(s) | 194 |
| AsuHPI | GGTGA | 3 cut(s) | 16, 106, 281 |
| BaeGI | GKGCMC | 1 cut(s) | 144 |
| BccI | CCATC | 1 cut(s) | 322 |
| BciVI | GTATCC | 1 cut(s) | 268 |
| BclI | TGATCA | 1 cut(s) | 286 |
| BfaI | CTAG | 1 cut(s) | 269 |
| BfuI | GTATCC | 1 cut(s) | 268 |
| BmiI | GGNNCC | 1 cut(s) | 154 |
| BpuEI | CTTGAG | 1 cut(s) | 196 |
| Bse1I | ACTGG | 1 cut(s) | 254 |
| Bse3DI | GCAATG | 1 cut(s) | 308 |
| BseMI | GCAATG | 1 cut(s) | 308 |
| BseMII | CTCAG | 1 cut(s) | 333 |
| BseNI | ACTGG | 1 cut(s) | 254 |
| BseSI | GKGCMC | 1 cut(s) | 144 |
| Bsh1236I | CGCG | 1 cut(s) | 46 |
| Bsp1286I | GDGCHC | 1 cut(s) | 144 |
| Bsp143I | GATC | 3 cut(s) | 124, 199, 286 |
| BspCNI | CTCAG | 1 cut(s) | 334 |
| BspFNI | CGCG | 1 cut(s) | 46 |
| BspLI | GGNNCC | 1 cut(s) | 154 |
| BspPI | GGATC | 1 cut(s) | 194 |
| BspQI | GCTCTTC | 1 cut(s) | 387 |
| BsrDI | GCAATG | 1 cut(s) | 308 |
| BsrI | ACTGG | 1 cut(s) | 254 |
| BssMI | GATC | 3 cut(s) | 124, 199, 286 |
| Bst4CI | ACNGT | 1 cut(s) | 355 |
| Bst6I | CTCTTC | 1 cut(s) | 387 |
| BstC8I | GCNNGC | 1 cut(s) | 234 |
| BstDEI | CTNAG | 3 cut(s) | 118, 128, 342 |
| BstFNI | CGCG | 1 cut(s) | 46 |
| BstKTI | GATC | 3 cut(s) | 127, 202, 289 |
| BstMBI | GATC | 3 cut(s) | 124, 199, 286 |
| BstSLI | GKGCMC | 1 cut(s) | 144 |
| BstUI | CGCG | 1 cut(s) | 46 |
| BstX2I | RGATCY | 1 cut(s) | 199 |
| BstYI | RGATCY | 1 cut(s) | 199 |
| BsuI | GTATCC | 1 cut(s) | 268 |
| Cac8I | GCNNGC | 1 cut(s) | 234 |
| CviAII | CATG | 2 cut(s) | 305, 384 |
| CviJI | RGCY | 3 cut(s) | 39, 167, 268 |
| CviKI_1 | RGCY | 3 cut(s) | 39, 167, 268 |
| DdeI | CTNAG | 3 cut(s) | 118, 128, 342 |
| DpnI | GATC | 3 cut(s) | 126, 201, 288 |
| DpnII | GATC | 3 cut(s) | 124, 199, 286 |
| DraI | TTTAAA | 1 cut(s) | 58 |
| Eam1104I | CTCTTC | 1 cut(s) | 387 |
| EarI | CTCTTC | 1 cut(s) | 387 |
| EcoT22I | ATGCAT | 1 cut(s) | 310 |
| FaeI | CATG | 2 cut(s) | 308, 387 |
| FaiI | YATR | 7 cut(s) | 19, 53, 306, 360, 375, 385, 399 |
| FatI | CATG | 2 cut(s) | 304, 383 |
| FbaI | TGATCA | 1 cut(s) | 286 |
| FspBI | CTAG | 1 cut(s) | 269 |
| Hin1II | CATG | 2 cut(s) | 308, 387 |
| HinfI | GANTC | 3 cut(s) | 7, 111, 209 |
| HphI | GGTGA | 3 cut(s) | 16, 106, 281 |
| HpyAV | CCTTC | 2 cut(s) | 337, 371 |
| HpyCH4III | ACNGT | 1 cut(s) | 355 |
| HpyCH4V | TGCA | 4 cut(s) | 74, 178, 232, 308 |
| HpyF3I | CTNAG | 3 cut(s) | 118, 128, 342 |
| Hsp92II | CATG | 2 cut(s) | 308, 387 |
| Ksp22I | TGATCA | 1 cut(s) | 286 |
| Kzo9I | GATC | 3 cut(s) | 124, 199, 286 |
| LguI | GCTCTTC | 1 cut(s) | 387 |
| LpnPI | CCDG | 3 cut(s) | 135, 216, 235 |
| MaeI | CTAG | 1 cut(s) | 269 |
| MalI | GATC | 3 cut(s) | 126, 201, 288 |
| MboI | GATC | 3 cut(s) | 124, 199, 286 |
| MboII | GAAGA | 3 cut(s) | 209, 272, 404 |
| MfeI | CAATTG | 1 cut(s) | 242 |
| MflI | RGATCY | 1 cut(s) | 199 |
| MhlI | GDGCHC | 1 cut(s) | 144 |
| MluCI | AATT | 2 cut(s) | 242, 400 |
| MlyI | GAGTC | 1 cut(s) | 203 |
| MnlI | CCTC | 2 cut(s) | 94, 249 |
| Mph1103I | ATGCAT | 1 cut(s) | 310 |
| MseI | TTAA | 3 cut(s) | 57, 254, 321 |
| MunI | CAATTG | 1 cut(s) | 242 |
| MvnI | CGCG | 1 cut(s) | 46 |
| NdeII | GATC | 3 cut(s) | 124, 199, 286 |
| NlaIII | CATG | 2 cut(s) | 308, 387 |
| NlaIV | GGNNCC | 1 cut(s) | 154 |
| NsiI | ATGCAT | 1 cut(s) | 310 |
| PciSI | GCTCTTC | 1 cut(s) | 387 |
| PfeI | GAWTC | 2 cut(s) | 7, 111 |
| PleI | GAGTC | 1 cut(s) | 203 |
| PpsI | GAGTC | 1 cut(s) | 203 |
| PspN4I | GGNNCC | 1 cut(s) | 154 |
| PsuI | RGATCY | 1 cut(s) | 199 |
| SapI | GCTCTTC | 1 cut(s) | 387 |
| SaqAI | TTAA | 3 cut(s) | 57, 254, 321 |
| Sau3AI | GATC | 3 cut(s) | 124, 199, 286 |
| SchI | GAGTC | 1 cut(s) | 203 |
| SduI | GDGCHC | 1 cut(s) | 144 |
| SetI | ASST | 7 cut(s) | 41, 119, 169, 218, 241, 270, 329 |
| SmlI | CTYRAG | 1 cut(s) | 211 |
| SmoI | CTYRAG | 1 cut(s) | 211 |
| Sse9I | AATT | 2 cut(s) | 242, 400 |
| SspMI | CTAG | 1 cut(s) | 269 |
| TaaI | ACNGT | 1 cut(s) | 355 |
| TaqI | TCGA | 1 cut(s) | 330 |
| TasI | AATT | 2 cut(s) | 242, 400 |
| TfiI | GAWTC | 2 cut(s) | 7, 111 |
| Tru1I | TTAA | 3 cut(s) | 57, 254, 321 |
| Tru9I | TTAA | 3 cut(s) | 57, 254, 321 |
| TspDTI | ATGAA | 2 cut(s) | 273, 390 |
| XspI | CTAG | 1 cut(s) | 269 |
| Zsp2I | ATGCAT | 1 cut(s) | 310 |