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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 45, 66 |
| AciI | CCGC | 1 cut(s) | 689 |
| AcsI | RAATTY | 1 cut(s) | 405 |
| AcuI | CTGAAG | 1 cut(s) | 114 |
| AfaI | GTAC | 3 cut(s) | 181, 282, 512 |
| AflIII | ACRYGT | 1 cut(s) | 655 |
| AgsI | TTSAA | 2 cut(s) | 143, 564 |
| AjnI | CCWGG | 1 cut(s) | 271 |
| AluBI | AGCT | 6 cut(s) | 128, 329, 353, 737, 747, 863 |
| AluI | AGCT | 6 cut(s) | 128, 329, 353, 737, 747, 863 |
| Alw21I | GWGCWC | 1 cut(s) | 927 |
| Alw26I | GTCTC | 1 cut(s) | 419 |
| ApeKI | GCWGC | 2 cut(s) | 350, 671 |
| ApoI | RAATTY | 1 cut(s) | 405 |
| AspS9I | GGNCC | 1 cut(s) | 608 |
| AsuHPI | GGTGA | 3 cut(s) | 319, 392, 703 |
| AvaII | GGWCC | 1 cut(s) | 608 |
| BbsI | GAAGAC | 2 cut(s) | 96, 440 |
| Bbv12I | GWGCWC | 1 cut(s) | 927 |
| BbvI | GCAGC | 2 cut(s) | 362, 658 |
| BccI | CCATC | 4 cut(s) | 182, 448, 599, 766 |
| BceAI | ACGGC | 1 cut(s) | 606 |
| BciT130I | CCWGG | 1 cut(s) | 273 |
| BcoDI | GTCTC | 1 cut(s) | 419 |
| BfaI | CTAG | 1 cut(s) | 855 |
| BisI | GCNGC | 2 cut(s) | 351, 672 |
| BlsI | GCNGC | 2 cut(s) | 352, 673 |
| Bme1390I | CCNGG | 1 cut(s) | 273 |
| Bme18I | GGWCC | 1 cut(s) | 608 |
| BmgT120I | GGNCC | 1 cut(s) | 608 |
| BmrFI | CCNGG | 1 cut(s) | 273 |
| BmsI | GCATC | 3 cut(s) | 241, 337, 394 |
| BpiI | GAAGAC | 2 cut(s) | 96, 440 |
| BpuEI | CTTGAG | 2 cut(s) | 911, 923 |
| BsaAI | YACGTR | 1 cut(s) | 656 |
| BsaI | GGTCTC | 1 cut(s) | 419 |
| BsaJI | CCNNGG | 1 cut(s) | 271 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 194, 224, 736, 766 |
| Bse3DI | GCAATG | 1 cut(s) | 232 |
| BseBI | CCWGG | 1 cut(s) | 273 |
| BseDI | CCNNGG | 1 cut(s) | 271 |
| BseGI | GGATG | 5 cut(s) | 193, 211, 256, 459, 933 |
| BseMI | GCAATG | 1 cut(s) | 232 |
| BseMII | CTCAG | 1 cut(s) | 525 |
| BseRI | GAGGAG | 1 cut(s) | 215 |
| BseXI | GCAGC | 2 cut(s) | 362, 658 |
| BseYI | CCCAGC | 1 cut(s) | 747 |
| BsiHKAI | GWGCWC | 1 cut(s) | 927 |
| BslFI | GGGAC | 2 cut(s) | 643, 824 |
| BsmAI | GTCTC | 1 cut(s) | 419 |
| BsmFI | GGGAC | 2 cut(s) | 643, 824 |
| BsmI | GAATGC | 1 cut(s) | 482 |
| Bso31I | GGTCTC | 1 cut(s) | 419 |
| Bsp1286I | GDGCHC | 1 cut(s) | 927 |
| Bsp1407I | TGTACA | 2 cut(s) | 179, 280 |
| Bsp143I | GATC | 1 cut(s) | 909 |
| BspACI | CCGC | 1 cut(s) | 689 |
| BspCNI | CTCAG | 1 cut(s) | 526 |
| BspTNI | GGTCTC | 1 cut(s) | 419 |
| BsrDI | GCAATG | 1 cut(s) | 232 |
| BsrGI | TGTACA | 2 cut(s) | 179, 280 |
| BssECI | CCNNGG | 1 cut(s) | 271 |
| BssMI | GATC | 1 cut(s) | 909 |
| Bst2UI | CCWGG | 1 cut(s) | 273 |
| Bst4CI | ACNGT | 1 cut(s) | 510 |
| BstAUI | TGTACA | 2 cut(s) | 179, 280 |
| BstBAI | YACGTR | 1 cut(s) | 656 |
| BstC8I | GCNNGC | 1 cut(s) | 735 |
| BstDEI | CTNAG | 1 cut(s) | 534 |
| BstF5I | GGATG | 5 cut(s) | 193, 211, 256, 459, 933 |
| BstKTI | GATC | 1 cut(s) | 912 |
| BstMAI | GTCTC | 1 cut(s) | 419 |
| BstMBI | GATC | 1 cut(s) | 909 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 860 |
| BstNI | CCWGG | 1 cut(s) | 273 |
| BstSCI | CCNGG | 1 cut(s) | 271 |
| BstV1I | GCAGC | 2 cut(s) | 362, 658 |
| BstV2I | GAAGAC | 2 cut(s) | 96, 440 |
| BtgZI | GCGATG | 2 cut(s) | 360, 618 |
| BtsCI | GGATG | 5 cut(s) | 193, 211, 256, 459, 933 |
| BtsIMutI | CAGTG | 1 cut(s) | 159 |
| Cac8I | GCNNGC | 1 cut(s) | 735 |
| Cfr13I | GGNCC | 1 cut(s) | 608 |
| Csp6I | GTAC | 3 cut(s) | 180, 281, 511 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 763, 798 |
| CviAII | CATG | 6 cut(s) | 83, 335, 473, 626, 821, 869 |
| CviQI | GTAC | 3 cut(s) | 180, 281, 511 |
| DdeI | CTNAG | 1 cut(s) | 534 |
| DpnI | GATC | 1 cut(s) | 911 |
| DpnII | GATC | 1 cut(s) | 909 |
| DraI | TTTAAA | 2 cut(s) | 235, 324 |
| Eco31I | GGTCTC | 1 cut(s) | 419 |
| Eco47I | GGWCC | 1 cut(s) | 608 |
| Eco57I | CTGAAG | 1 cut(s) | 114 |
| EcoRII | CCWGG | 1 cut(s) | 271 |
| FaeI | CATG | 6 cut(s) | 86, 338, 476, 629, 824, 872 |
| FaqI | GGGAC | 2 cut(s) | 643, 824 |
| FatI | CATG | 6 cut(s) | 82, 334, 472, 625, 820, 868 |
| Fnu4HI | GCNGC | 2 cut(s) | 351, 672 |
| FokI | GGATG | 5 cut(s) | 200, 218, 263, 466, 920 |
| Fsp4HI | GCNGC | 2 cut(s) | 351, 672 |
| FspBI | CTAG | 1 cut(s) | 855 |
| GluI | GCNGC | 2 cut(s) | 351, 672 |
| GsaI | CCCAGC | 1 cut(s) | 751 |
| Hin1II | CATG | 6 cut(s) | 86, 338, 476, 629, 824, 872 |
| HinfI | GANTC | 6 cut(s) | 31, 122, 143, 149, 631, 694 |
| HphI | GGTGA | 3 cut(s) | 319, 392, 703 |
| Hpy166II | GTNNAC | 2 cut(s) | 281, 513 |
| Hpy188I | TCNGA | 4 cut(s) | 148, 196, 220, 361 |
| Hpy188III | TCNNGA | 2 cut(s) | 392, 928 |
| Hpy8I | GTNNAC | 2 cut(s) | 281, 513 |
| HpyAV | CCTTC | 1 cut(s) | 389 |
| HpyCH4III | ACNGT | 1 cut(s) | 510 |
| HpyCH4IV | ACGT | 2 cut(s) | 101, 655 |
| HpyCH4V | TGCA | 6 cut(s) | 225, 254, 350, 492, 546, 842 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 860 |
| HpyF3I | CTNAG | 1 cut(s) | 534 |
| HpySE526I | ACGT | 2 cut(s) | 101, 655 |
| Hsp92II | CATG | 6 cut(s) | 86, 338, 476, 629, 824, 872 |
| Kzo9I | GATC | 1 cut(s) | 909 |
| LmnI | GCTCC | 1 cut(s) | 744 |
| LpnPI | CCDG | 5 cut(s) | 117, 258, 285, 290, 733 |
| Lsp1109I | GCAGC | 2 cut(s) | 362, 658 |
| LweI | GCATC | 3 cut(s) | 241, 337, 394 |
| MaeI | CTAG | 1 cut(s) | 855 |
| MaeII | ACGT | 2 cut(s) | 101, 655 |
| MalI | GATC | 1 cut(s) | 911 |
| MboI | GATC | 1 cut(s) | 909 |
| MboII | GAAGA | 8 cut(s) | 96, 107, 131, 380, 445, 478, 550, 722 |
| MhlI | GDGCHC | 1 cut(s) | 927 |
| MluCI | AATT | 5 cut(s) | 284, 319, 405, 650, 888 |
| MlyI | GAGTC | 2 cut(s) | 25, 625 |
| MnlI | CCTC | 6 cut(s) | 193, 196, 241, 673, 801, 947 |
| MseI | TTAA | 3 cut(s) | 27, 234, 323 |
| MslI | CAYNNNNRTG | 1 cut(s) | 220 |
| MspR9I | CCNGG | 1 cut(s) | 273 |
| Mva1269I | GAATGC | 1 cut(s) | 482 |
| MvaI | CCWGG | 1 cut(s) | 273 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 860 |
| NdeII | GATC | 1 cut(s) | 909 |
| NlaIII | CATG | 6 cut(s) | 86, 338, 476, 629, 824, 872 |
| PctI | GAATGC | 1 cut(s) | 482 |
| PfeI | GAWTC | 4 cut(s) | 122, 143, 149, 694 |
| PkrI | GCNGC | 2 cut(s) | 352, 673 |
| PleI | GAGTC | 2 cut(s) | 25, 625 |
| PpsI | GAGTC | 2 cut(s) | 25, 625 |
| Ppu21I | YACGTR | 1 cut(s) | 656 |
| PsiI | TTATAA | 2 cut(s) | 45, 66 |
| Psp6I | CCWGG | 1 cut(s) | 271 |
| PspFI | CCCAGC | 1 cut(s) | 747 |
| PspGI | CCWGG | 1 cut(s) | 271 |
| PspPI | GGNCC | 1 cut(s) | 608 |
| RsaI | GTAC | 3 cut(s) | 181, 282, 512 |
| RsaNI | GTAC | 3 cut(s) | 180, 281, 511 |
| RseI | CAYNNNNRTG | 1 cut(s) | 220 |
| SaqAI | TTAA | 3 cut(s) | 27, 234, 323 |
| SatI | GCNGC | 2 cut(s) | 351, 672 |
| Sau3AI | GATC | 1 cut(s) | 909 |
| Sau96I | GGNCC | 1 cut(s) | 608 |
| SchI | GAGTC | 2 cut(s) | 25, 625 |
| ScrFI | CCNGG | 1 cut(s) | 273 |
| SduI | GDGCHC | 1 cut(s) | 927 |
| SfaNI | GCATC | 3 cut(s) | 241, 337, 394 |
| SinI | GGWCC | 1 cut(s) | 608 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 220 |
| SmlI | CTYRAG | 2 cut(s) | 926, 938 |
| SmoI | CTYRAG | 2 cut(s) | 926, 938 |
| Sse9I | AATT | 5 cut(s) | 284, 319, 405, 650, 888 |
| SsiI | CCGC | 1 cut(s) | 689 |
| SspMI | CTAG | 1 cut(s) | 855 |
| StyD4I | CCNGG | 1 cut(s) | 271 |
| TaaI | ACNGT | 1 cut(s) | 510 |
| TaiI | ACGT | 2 cut(s) | 104, 658 |
| TaqI | TCGA | 1 cut(s) | 137 |
| TasI | AATT | 5 cut(s) | 284, 319, 405, 650, 888 |
| TatI | WGTACW | 3 cut(s) | 179, 280, 510 |
| TfiI | GAWTC | 4 cut(s) | 122, 143, 149, 694 |
| Tru1I | TTAA | 3 cut(s) | 27, 234, 323 |
| Tru9I | TTAA | 3 cut(s) | 27, 234, 323 |
| TscAI | CASTG | 1 cut(s) | 159 |
| TseI | GCWGC | 2 cut(s) | 350, 671 |
| TspDTI | ATGAA | 5 cut(s) | 72, 204, 417, 489, 909 |
| TspRI | CASTG | 1 cut(s) | 159 |
| VpaK11BI | GGWCC | 1 cut(s) | 608 |
| XapI | RAATTY | 1 cut(s) | 405 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 436 |
| XspI | CTAG | 1 cut(s) | 855 |