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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 575 |
| AccI | GTMKAC | 1 cut(s) | 663 |
| AclI | AACGTT | 1 cut(s) | 20 |
| AclWI | GGATC | 1 cut(s) | 540 |
| AfaI | GTAC | 1 cut(s) | 646 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 231, 456 |
| AflIII | ACRYGT | 1 cut(s) | 736 |
| AgsI | TTSAA | 6 cut(s) | 34, 220, 445, 625, 761, 968 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 175, 207, 316, 348, 400, 432 |
| AloI | GAACNNNNNNTCC | 1 cut(s) | 37 |
| AluBI | AGCT | 3 cut(s) | 731, 841, 978 |
| AluI | AGCT | 3 cut(s) | 731, 841, 978 |
| AlwI | GGATC | 1 cut(s) | 540 |
| AoxI | GGCC | 4 cut(s) | 163, 304, 388, 703 |
| ApeKI | GCWGC | 1 cut(s) | 841 |
| AseI | ATTAAT | 1 cut(s) | 549 |
| AspS9I | GGNCC | 3 cut(s) | 164, 305, 389 |
| AsuC2I | CCSGG | 2 cut(s) | 233, 458 |
| AsuHPI | GGTGA | 1 cut(s) | 959 |
| AsuII | TTCGAA | 1 cut(s) | 469 |
| BaeGI | GKGCMC | 1 cut(s) | 803 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 605, 638 |
| BbsI | GAAGAC | 1 cut(s) | 768 |
| BbvI | GCAGC | 1 cut(s) | 828 |
| BccI | CCATC | 7 cut(s) | 148, 289, 373, 776, 895, 908, 938 |
| BciVI | GTATCC | 2 cut(s) | 251, 606 |
| BcnI | CCSGG | 2 cut(s) | 233, 458 |
| BfaI | CTAG | 4 cut(s) | 122, 159, 648, 927 |
| BfmI | CTRYAG | 1 cut(s) | 817 |
| BfuI | GTATCC | 2 cut(s) | 251, 606 |
| BisI | GCNGC | 1 cut(s) | 842 |
| BlsI | GCNGC | 1 cut(s) | 843 |
| BmcAI | AGTACT | 1 cut(s) | 646 |
| Bme1390I | CCNGG | 2 cut(s) | 233, 458 |
| BmgT120I | GGNCC | 3 cut(s) | 164, 305, 389 |
| BmrFI | CCNGG | 2 cut(s) | 233, 458 |
| BmrI | ACTGGG | 1 cut(s) | 680 |
| BmsI | GCATC | 2 cut(s) | 91, 496 |
| BmuI | ACTGGG | 1 cut(s) | 680 |
| BpiI | GAAGAC | 1 cut(s) | 768 |
| Bpu14I | TTCGAA | 1 cut(s) | 469 |
| BpuMI | CCSGG | 2 cut(s) | 233, 458 |
| BsaBI | GATNNNNATC | 2 cut(s) | 105, 918 |
| BsaJI | CCNNGG | 1 cut(s) | 528 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 5, 35 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 231, 456 |
| Bse1I | ACTGG | 3 cut(s) | 89, 617, 675 |
| Bse3DI | GCAATG | 1 cut(s) | 516 |
| Bse8I | GATNNNNATC | 2 cut(s) | 105, 918 |
| BseDI | CCNNGG | 1 cut(s) | 528 |
| BseGI | GGATG | 5 cut(s) | 57, 106, 159, 300, 384 |
| BseJI | GATNNNNATC | 2 cut(s) | 105, 918 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 231, 456 |
| BseMI | GCAATG | 1 cut(s) | 516 |
| BseNI | ACTGG | 3 cut(s) | 89, 617, 675 |
| BseSI | GKGCMC | 1 cut(s) | 803 |
| BseXI | GCAGC | 1 cut(s) | 828 |
| BshFI | GGCC | 4 cut(s) | 165, 306, 390, 705 |
| BsiSI | CCGG | 2 cut(s) | 232, 457 |
| BslFI | GGGAC | 3 cut(s) | 95, 248, 473 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 231, 456 |
| BsmFI | GGGAC | 3 cut(s) | 95, 248, 473 |
| BsnI | GGCC | 4 cut(s) | 165, 306, 390, 705 |
| Bsp119I | TTCGAA | 1 cut(s) | 469 |
| Bsp1286I | GDGCHC | 1 cut(s) | 803 |
| Bsp143I | GATC | 1 cut(s) | 532 |
| BspANI | GGCC | 4 cut(s) | 165, 306, 390, 705 |
| BspHI | TCATGA | 1 cut(s) | 985 |
| BspPI | GGATC | 1 cut(s) | 540 |
| BspQI | GCTCTTC | 1 cut(s) | 831 |
| BspT104I | TTCGAA | 1 cut(s) | 469 |
| BsrDI | GCAATG | 1 cut(s) | 516 |
| BsrI | ACTGG | 3 cut(s) | 89, 617, 675 |
| BssECI | CCNNGG | 1 cut(s) | 528 |
| BssMI | GATC | 1 cut(s) | 532 |
| BssT1I | CCWWGG | 1 cut(s) | 528 |
| Bst4CI | ACNGT | 3 cut(s) | 239, 464, 475 |
| Bst6I | CTCTTC | 1 cut(s) | 831 |
| BstBI | TTCGAA | 1 cut(s) | 469 |
| BstF5I | GGATG | 5 cut(s) | 57, 106, 159, 300, 384 |
| BstKTI | GATC | 1 cut(s) | 535 |
| BstMBI | GATC | 1 cut(s) | 532 |
| BstSCI | CCNGG | 2 cut(s) | 231, 456 |
| BstSFI | CTRYAG | 1 cut(s) | 817 |
| BstSLI | GKGCMC | 1 cut(s) | 803 |
| BstV1I | GCAGC | 1 cut(s) | 828 |
| BstV2I | GAAGAC | 1 cut(s) | 768 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 206, 347 |
| BsuI | GTATCC | 2 cut(s) | 251, 606 |
| BsuRI | GGCC | 4 cut(s) | 165, 306, 390, 705 |
| BtsCI | GGATG | 5 cut(s) | 57, 106, 159, 300, 384 |
| BtsIMutI | CAGTG | 2 cut(s) | 360, 624 |
| CciI | TCATGA | 1 cut(s) | 985 |
| Cfr13I | GGNCC | 3 cut(s) | 164, 305, 389 |
| Csp6I | GTAC | 1 cut(s) | 645 |
| CviAII | CATG | 6 cut(s) | 200, 341, 425, 707, 845, 986 |
| CviQI | GTAC | 1 cut(s) | 645 |
| DpnI | GATC | 1 cut(s) | 534 |
| DpnII | GATC | 1 cut(s) | 532 |
| Eam1104I | CTCTTC | 1 cut(s) | 831 |
| EarI | CTCTTC | 1 cut(s) | 831 |
| Eco130I | CCWWGG | 1 cut(s) | 528 |
| EcoO109I | RGGNCCY | 1 cut(s) | 164 |
| EcoT14I | CCWWGG | 1 cut(s) | 528 |
| ErhI | CCWWGG | 1 cut(s) | 528 |
| FaeI | CATG | 6 cut(s) | 203, 344, 428, 710, 848, 989 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 175, 207, 316, 348, 400, 432 |
| FaqI | GGGAC | 3 cut(s) | 95, 248, 473 |
| FatI | CATG | 6 cut(s) | 199, 340, 424, 706, 844, 985 |
| FauNDI | CATATG | 1 cut(s) | 936 |
| FblI | GTMKAC | 1 cut(s) | 663 |
| Fnu4HI | GCNGC | 1 cut(s) | 842 |
| FokI | GGATG | 5 cut(s) | 64, 113, 166, 307, 391 |
| Fsp4HI | GCNGC | 1 cut(s) | 842 |
| FspBI | CTAG | 4 cut(s) | 122, 159, 648, 927 |
| GluI | GCNGC | 1 cut(s) | 842 |
| HaeIII | GGCC | 4 cut(s) | 165, 306, 390, 705 |
| HapII | CCGG | 2 cut(s) | 232, 457 |
| Hin1II | CATG | 6 cut(s) | 203, 344, 428, 710, 848, 989 |
| HincII | GTYRAC | 4 cut(s) | 18, 214, 355, 439 |
| HindII | GTYRAC | 4 cut(s) | 18, 214, 355, 439 |
| HindIII | AAGCTT | 1 cut(s) | 976 |
| HinfI | GANTC | 1 cut(s) | 30 |
| HpaI | GTTAAC | 1 cut(s) | 18 |
| HpaII | CCGG | 2 cut(s) | 232, 457 |
| HphI | GGTGA | 1 cut(s) | 959 |
| Hpy166II | GTNNAC | 7 cut(s) | 18, 214, 355, 439, 595, 664, 678 |
| Hpy188I | TCNGA | 5 cut(s) | 139, 245, 255, 280, 480 |
| Hpy188III | TCNNGA | 3 cut(s) | 34, 122, 986 |
| Hpy8I | GTNNAC | 7 cut(s) | 18, 214, 355, 439, 595, 664, 678 |
| HpyCH4III | ACNGT | 3 cut(s) | 239, 464, 475 |
| HpyCH4IV | ACGT | 2 cut(s) | 20, 738 |
| HpyCH4V | TGCA | 6 cut(s) | 4, 104, 509, 514, 521, 844 |
| HpySE526I | ACGT | 2 cut(s) | 20, 738 |
| Hsp92II | CATG | 6 cut(s) | 203, 344, 428, 710, 848, 989 |
| KspAI | GTTAAC | 1 cut(s) | 18 |
| Kzo9I | GATC | 1 cut(s) | 532 |
| LguI | GCTCTTC | 1 cut(s) | 831 |
| LpnPI | CCDG | 8 cut(s) | 70, 245, 285, 369, 470, 630, 656, 816 |
| Lsp1109I | GCAGC | 1 cut(s) | 828 |
| LweI | GCATC | 2 cut(s) | 91, 496 |
| MaeI | CTAG | 4 cut(s) | 122, 159, 648, 927 |
| MaeII | ACGT | 2 cut(s) | 20, 738 |
| MalI | GATC | 1 cut(s) | 534 |
| MboI | GATC | 1 cut(s) | 532 |
| MboII | GAAGA | 5 cut(s) | 49, 773, 845, 848, 872 |
| MfeI | CAATTG | 1 cut(s) | 5 |
| MhlI | GDGCHC | 1 cut(s) | 803 |
| MluCI | AATT | 1 cut(s) | 5 |
| MnlI | CCTC | 4 cut(s) | 90, 108, 155, 583 |
| MseI | TTAA | 4 cut(s) | 17, 89, 549, 741 |
| MslI | CAYNNNNRTG | 5 cut(s) | 204, 345, 429, 711, 935 |
| MspI | CCGG | 2 cut(s) | 232, 457 |
| MspR9I | CCNGG | 2 cut(s) | 233, 458 |
| MunI | CAATTG | 1 cut(s) | 5 |
| NciI | CCSGG | 2 cut(s) | 233, 458 |
| NdeI | CATATG | 1 cut(s) | 936 |
| NdeII | GATC | 1 cut(s) | 532 |
| NlaIII | CATG | 6 cut(s) | 203, 344, 428, 710, 848, 989 |
| NspV | TTCGAA | 1 cut(s) | 469 |
| PagI | TCATGA | 1 cut(s) | 985 |
| PciSI | GCTCTTC | 1 cut(s) | 831 |
| PfeI | GAWTC | 1 cut(s) | 30 |
| PkrI | GCNGC | 1 cut(s) | 843 |
| PshBI | ATTAAT | 1 cut(s) | 549 |
| PsiI | TTATAA | 1 cut(s) | 575 |
| Psp1406I | AACGTT | 1 cut(s) | 20 |
| PspPI | GGNCC | 3 cut(s) | 164, 305, 389 |
| RsaI | GTAC | 1 cut(s) | 646 |
| RsaNI | GTAC | 1 cut(s) | 645 |
| RseI | CAYNNNNRTG | 5 cut(s) | 204, 345, 429, 711, 935 |
| SapI | GCTCTTC | 1 cut(s) | 831 |
| SaqAI | TTAA | 4 cut(s) | 17, 89, 549, 741 |
| SatI | GCNGC | 1 cut(s) | 842 |
| Sau3AI | GATC | 1 cut(s) | 532 |
| Sau96I | GGNCC | 3 cut(s) | 164, 305, 389 |
| ScaI | AGTACT | 1 cut(s) | 646 |
| ScrFI | CCNGG | 2 cut(s) | 233, 458 |
| SduI | GDGCHC | 1 cut(s) | 803 |
| SfaNI | GCATC | 2 cut(s) | 91, 496 |
| SfcI | CTRYAG | 1 cut(s) | 817 |
| SfuI | TTCGAA | 1 cut(s) | 469 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 204, 345, 429, 711, 935 |
| Sse9I | AATT | 1 cut(s) | 5 |
| SspMI | CTAG | 4 cut(s) | 122, 159, 648, 927 |
| StyD4I | CCNGG | 2 cut(s) | 231, 456 |
| StyI | CCWWGG | 1 cut(s) | 528 |
| TaaI | ACNGT | 3 cut(s) | 239, 464, 475 |
| TaiI | ACGT | 2 cut(s) | 23, 741 |
| TaqI | TCGA | 1 cut(s) | 469 |
| TasI | AATT | 1 cut(s) | 5 |
| TatI | WGTACW | 1 cut(s) | 644 |
| TfiI | GAWTC | 1 cut(s) | 30 |
| Tru1I | TTAA | 4 cut(s) | 17, 89, 549, 741 |
| Tru9I | TTAA | 4 cut(s) | 17, 89, 549, 741 |
| TscAI | CASTG | 2 cut(s) | 367, 624 |
| TseI | GCWGC | 1 cut(s) | 841 |
| TspDTI | ATGAA | 8 cut(s) | 183, 189, 324, 330, 408, 414, 846, 987 |
| TspGWI | ACGGA | 1 cut(s) | 14 |
| TspRI | CASTG | 2 cut(s) | 367, 624 |
| VspI | ATTAAT | 1 cut(s) | 549 |
| XbaI | TCTAGA | 1 cut(s) | 121 |
| XmiI | GTMKAC | 1 cut(s) | 663 |
| XspI | CTAG | 4 cut(s) | 122, 159, 648, 927 |
| ZrmI | AGTACT | 1 cut(s) | 646 |