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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcsI | RAATTY | 3 cut(s) | 62, 227, 761 |
| AcuI | CTGAAG | 2 cut(s) | 288, 618 |
| AfaI | GTAC | 1 cut(s) | 473 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 258, 743 |
| AflII | CTTAAG | 1 cut(s) | 68 |
| AflIII | ACRYGT | 1 cut(s) | 680 |
| AgsI | TTSAA | 1 cut(s) | 257 |
| AhlI | ACTAGT | 1 cut(s) | 728 |
| AjnI | CCWGG | 1 cut(s) | 475 |
| AluBI | AGCT | 4 cut(s) | 49, 155, 272, 467 |
| AluI | AGCT | 4 cut(s) | 49, 155, 272, 467 |
| AoxI | GGCC | 1 cut(s) | 630 |
| ApoI | RAATTY | 3 cut(s) | 62, 227, 761 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 434 |
| AspLEI | GCGC | 1 cut(s) | 122 |
| AsuHPI | GGTGA | 3 cut(s) | 359, 386, 413 |
| BbsI | GAAGAC | 1 cut(s) | 644 |
| BccI | CCATC | 4 cut(s) | 134, 287, 293, 449 |
| BciT130I | CCWGG | 1 cut(s) | 477 |
| BclI | TGATCA | 1 cut(s) | 573 |
| BcuI | ACTAGT | 1 cut(s) | 728 |
| BfaI | CTAG | 4 cut(s) | 50, 156, 234, 729 |
| BfmI | CTRYAG | 1 cut(s) | 78 |
| BfrI | CTTAAG | 1 cut(s) | 68 |
| Bme1390I | CCNGG | 1 cut(s) | 477 |
| BmrFI | CCNGG | 1 cut(s) | 477 |
| BmsI | GCATC | 2 cut(s) | 6, 712 |
| BpiI | GAAGAC | 1 cut(s) | 644 |
| Bsa29I | ATCGAT | 1 cut(s) | 366 |
| BsaBI | GATNNNNATC | 3 cut(s) | 99, 572, 578 |
| BsaJI | CCNNGG | 1 cut(s) | 475 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 288, 318, 740, 770 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 258, 743 |
| Bse8I | GATNNNNATC | 3 cut(s) | 99, 572, 578 |
| BseBI | CCWGG | 1 cut(s) | 477 |
| BseCI | ATCGAT | 1 cut(s) | 366 |
| BseDI | CCNNGG | 1 cut(s) | 475 |
| BseGI | GGATG | 5 cut(s) | 21, 165, 358, 412, 460 |
| BseJI | GATNNNNATC | 3 cut(s) | 99, 572, 578 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 258, 743 |
| BseMII | CTCAG | 1 cut(s) | 555 |
| BshFI | GGCC | 1 cut(s) | 632 |
| BshVI | ATCGAT | 1 cut(s) | 366 |
| BslFI | GGGAC | 1 cut(s) | 99 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 258, 743 |
| BsmFI | GGGAC | 1 cut(s) | 99 |
| BsmI | GAATGC | 2 cut(s) | 91, 253 |
| BsnI | GGCC | 1 cut(s) | 632 |
| Bsp143I | GATC | 6 cut(s) | 32, 100, 169, 325, 573, 579 |
| BspANI | GGCC | 1 cut(s) | 632 |
| BspCNI | CTCAG | 1 cut(s) | 556 |
| BspDI | ATCGAT | 1 cut(s) | 366 |
| BspHI | TCATGA | 2 cut(s) | 438, 576 |
| BspQI | GCTCTTC | 1 cut(s) | 375 |
| BspTI | CTTAAG | 1 cut(s) | 68 |
| BssECI | CCNNGG | 1 cut(s) | 475 |
| BssMI | GATC | 6 cut(s) | 32, 100, 169, 325, 573, 579 |
| Bst2UI | CCWGG | 1 cut(s) | 477 |
| Bst4CI | ACNGT | 1 cut(s) | 277 |
| Bst6I | CTCTTC | 1 cut(s) | 375 |
| BstAFI | CTTAAG | 1 cut(s) | 68 |
| BstC8I | GCNNGC | 3 cut(s) | 21, 91, 717 |
| BstDEI | CTNAG | 1 cut(s) | 564 |
| BstF5I | GGATG | 5 cut(s) | 21, 165, 358, 412, 460 |
| BstHHI | GCGC | 1 cut(s) | 122 |
| BstKTI | GATC | 6 cut(s) | 35, 103, 172, 328, 576, 582 |
| BstMBI | GATC | 6 cut(s) | 32, 100, 169, 325, 573, 579 |
| BstNI | CCWGG | 1 cut(s) | 477 |
| BstNSI | RCATGY | 4 cut(s) | 23, 547, 684, 719 |
| BstSCI | CCNGG | 1 cut(s) | 475 |
| BstSFI | CTRYAG | 1 cut(s) | 78 |
| BstV2I | GAAGAC | 1 cut(s) | 644 |
| Bsu15I | ATCGAT | 1 cut(s) | 366 |
| BsuRI | GGCC | 1 cut(s) | 632 |
| BsuTUI | ATCGAT | 1 cut(s) | 366 |
| BtsCI | GGATG | 5 cut(s) | 21, 165, 358, 412, 460 |
| Cac8I | GCNNGC | 3 cut(s) | 21, 91, 717 |
| CciI | TCATGA | 2 cut(s) | 438, 576 |
| CfoI | GCGC | 1 cut(s) | 122 |
| ClaI | ATCGAT | 1 cut(s) | 366 |
| Csp6I | GTAC | 1 cut(s) | 472 |
| CviAII | CATG | 8 cut(s) | 20, 439, 539, 544, 577, 586, 681, 716 |
| CviJI | RGCY | 7 cut(s) | 49, 155, 272, 319, 344, 467, 632 |
| CviKI_1 | RGCY | 7 cut(s) | 49, 155, 272, 319, 344, 467, 632 |
| CviQI | GTAC | 1 cut(s) | 472 |
| DdeI | CTNAG | 1 cut(s) | 564 |
| DpnI | GATC | 6 cut(s) | 34, 102, 171, 327, 575, 581 |
| DpnII | GATC | 6 cut(s) | 32, 100, 169, 325, 573, 579 |
| Eam1104I | CTCTTC | 1 cut(s) | 375 |
| EarI | CTCTTC | 1 cut(s) | 375 |
| Eco32I | GATATC | 1 cut(s) | 264 |
| Eco57I | CTGAAG | 2 cut(s) | 288, 618 |
| EcoRI | GAATTC | 1 cut(s) | 62 |
| EcoRII | CCWGG | 1 cut(s) | 475 |
| EcoRV | GATATC | 1 cut(s) | 264 |
| EcoT22I | ATGCAT | 1 cut(s) | 21 |
| FaeI | CATG | 8 cut(s) | 23, 442, 542, 547, 580, 589, 684, 719 |
| FaqI | GGGAC | 1 cut(s) | 99 |
| FatI | CATG | 8 cut(s) | 19, 438, 538, 543, 576, 585, 680, 715 |
| FbaI | TGATCA | 1 cut(s) | 573 |
| FokI | GGATG | 5 cut(s) | 28, 172, 365, 419, 467 |
| FspBI | CTAG | 4 cut(s) | 50, 156, 234, 729 |
| GlaI | GCGC | 1 cut(s) | 121 |
| HaeIII | GGCC | 1 cut(s) | 632 |
| HhaI | GCGC | 1 cut(s) | 122 |
| Hin1II | CATG | 8 cut(s) | 23, 442, 542, 547, 580, 589, 684, 719 |
| Hin6I | GCGC | 1 cut(s) | 120 |
| HinP1I | GCGC | 1 cut(s) | 120 |
| HindIII | AAGCTT | 1 cut(s) | 465 |
| HinfI | GANTC | 2 cut(s) | 425, 749 |
| HphI | GGTGA | 3 cut(s) | 359, 386, 413 |
| Hpy166II | GTNNAC | 1 cut(s) | 620 |
| Hpy188I | TCNGA | 2 cut(s) | 268, 565 |
| Hpy188III | TCNNGA | 4 cut(s) | 59, 439, 577, 596 |
| Hpy8I | GTNNAC | 1 cut(s) | 620 |
| HpyAV | CCTTC | 1 cut(s) | 593 |
| HpyCH4III | ACNGT | 1 cut(s) | 277 |
| HpyCH4V | TGCA | 5 cut(s) | 19, 89, 506, 696, 725 |
| HpyF3I | CTNAG | 1 cut(s) | 564 |
| Hsp92II | CATG | 8 cut(s) | 23, 442, 542, 547, 580, 589, 684, 719 |
| HspAI | GCGC | 1 cut(s) | 120 |
| Ksp22I | TGATCA | 1 cut(s) | 573 |
| Kzo9I | GATC | 6 cut(s) | 32, 100, 169, 325, 573, 579 |
| LguI | GCTCTTC | 1 cut(s) | 375 |
| LpnPI | CCDG | 8 cut(s) | 44, 130, 305, 314, 330, 462, 489, 609 |
| LweI | GCATC | 2 cut(s) | 6, 712 |
| MaeI | CTAG | 4 cut(s) | 50, 156, 234, 729 |
| MaeIII | GTNAC | 2 cut(s) | 133, 200 |
| MalI | GATC | 6 cut(s) | 34, 102, 171, 327, 575, 581 |
| MboI | GATC | 6 cut(s) | 32, 100, 169, 325, 573, 579 |
| MboII | GAAGA | 5 cut(s) | 302, 335, 392, 584, 649 |
| MluCI | AATT | 5 cut(s) | 62, 227, 497, 550, 761 |
| MlyI | GAGTC | 1 cut(s) | 758 |
| MnlI | CCTC | 6 cut(s) | 343, 370, 397, 445, 622, 701 |
| Mph1103I | ATGCAT | 1 cut(s) | 21 |
| MroXI | GAANNNNTTC | 1 cut(s) | 434 |
| MseI | TTAA | 5 cut(s) | 69, 165, 500, 528, 687 |
| MslI | CAYNNNNRTG | 1 cut(s) | 720 |
| MspCI | CTTAAG | 1 cut(s) | 68 |
| MspR9I | CCNGG | 1 cut(s) | 477 |
| Mva1269I | GAATGC | 2 cut(s) | 91, 253 |
| MvaI | CCWGG | 1 cut(s) | 477 |
| NdeII | GATC | 6 cut(s) | 32, 100, 169, 325, 573, 579 |
| NlaIII | CATG | 8 cut(s) | 23, 442, 542, 547, 580, 589, 684, 719 |
| NsiI | ATGCAT | 1 cut(s) | 21 |
| NspI | RCATGY | 4 cut(s) | 23, 547, 684, 719 |
| PaeI | GCATGC | 2 cut(s) | 23, 719 |
| PagI | TCATGA | 2 cut(s) | 438, 576 |
| PciI | ACATGT | 1 cut(s) | 680 |
| PciSI | GCTCTTC | 1 cut(s) | 375 |
| PctI | GAATGC | 2 cut(s) | 91, 253 |
| PdmI | GAANNNNTTC | 1 cut(s) | 434 |
| PfeI | GAWTC | 1 cut(s) | 425 |
| PleI | GAGTC | 1 cut(s) | 757 |
| PpsI | GAGTC | 1 cut(s) | 757 |
| PscI | ACATGT | 1 cut(s) | 680 |
| Psp6I | CCWGG | 1 cut(s) | 475 |
| PspGI | CCWGG | 1 cut(s) | 475 |
| RsaI | GTAC | 1 cut(s) | 473 |
| RsaNI | GTAC | 1 cut(s) | 472 |
| RseI | CAYNNNNRTG | 1 cut(s) | 720 |
| SapI | GCTCTTC | 1 cut(s) | 375 |
| SaqAI | TTAA | 5 cut(s) | 69, 165, 500, 528, 687 |
| Sau3AI | GATC | 6 cut(s) | 32, 100, 169, 325, 573, 579 |
| SchI | GAGTC | 1 cut(s) | 758 |
| ScrFI | CCNGG | 1 cut(s) | 477 |
| SetI | ASST | 9 cut(s) | 51, 55, 157, 274, 469, 521, 528, 604, 758 |
| SfaNI | GCATC | 2 cut(s) | 6, 712 |
| SfcI | CTRYAG | 1 cut(s) | 78 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 720 |
| SmlI | CTYRAG | 1 cut(s) | 68 |
| SmoI | CTYRAG | 1 cut(s) | 68 |
| SpeI | ACTAGT | 1 cut(s) | 728 |
| SphI | GCATGC | 2 cut(s) | 23, 719 |
| Sse9I | AATT | 5 cut(s) | 62, 227, 497, 550, 761 |
| SspMI | CTAG | 4 cut(s) | 50, 156, 234, 729 |
| StyD4I | CCNGG | 1 cut(s) | 475 |
| TaaI | ACNGT | 1 cut(s) | 277 |
| TaqI | TCGA | 3 cut(s) | 366, 393, 428 |
| TasI | AATT | 5 cut(s) | 62, 227, 497, 550, 761 |
| TfiI | GAWTC | 1 cut(s) | 425 |
| Tru1I | TTAA | 5 cut(s) | 69, 165, 500, 528, 687 |
| Tru9I | TTAA | 5 cut(s) | 69, 165, 500, 528, 687 |
| TspDTI | ATGAA | 5 cut(s) | 260, 427, 455, 500, 639 |
| Vha464I | CTTAAG | 1 cut(s) | 68 |
| XapI | RAATTY | 3 cut(s) | 62, 227, 761 |
| XceI | RCATGY | 4 cut(s) | 23, 547, 684, 719 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 640 |
| XmnI | GAANNNNTTC | 1 cut(s) | 434 |
| XspI | CTAG | 4 cut(s) | 50, 156, 234, 729 |
| Zsp2I | ATGCAT | 1 cut(s) | 21 |