TdcA1-ORF2 protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| DUF4216 | PF13952 | 168 - 238 | 3.6e-20 | Domain of unknown function (DUF4216) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 496 |
| AccII | CGCG | 1 cut(s) | 701 |
| AciI | CCGC | 6 cut(s) | 35, 273, 460, 566, 746, 854 |
| AclWI | GGATC | 1 cut(s) | 899 |
| AcsI | RAATTY | 3 cut(s) | 105, 433, 870 |
| AdeI | CACNNNGTG | 1 cut(s) | 455 |
| AfaI | GTAC | 3 cut(s) | 57, 242, 590 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 159, 160, 250, 496, 691 |
| AflIII | ACRYGT | 1 cut(s) | 699 |
| AgsI | TTSAA | 7 cut(s) | 25, 67, 95, 188, 227, 293, 541 |
| AluBI | AGCT | 1 cut(s) | 142 |
| AluI | AGCT | 1 cut(s) | 142 |
| Alw21I | GWGCWC | 2 cut(s) | 534, 726 |
| Alw26I | GTCTC | 2 cut(s) | 85, 405 |
| Alw44I | GTGCAC | 2 cut(s) | 530, 722 |
| AlwI | GGATC | 1 cut(s) | 899 |
| Ama87I | CYCGRG | 1 cut(s) | 236 |
| AoxI | GGCC | 2 cut(s) | 563, 762 |
| ApaLI | GTGCAC | 2 cut(s) | 530, 722 |
| ApoI | RAATTY | 3 cut(s) | 105, 433, 870 |
| AseI | ATTAAT | 1 cut(s) | 966 |
| AsuC2I | CCSGG | 1 cut(s) | 743 |
| AsuHPI | GGTGA | 6 cut(s) | 242, 296, 391, 616, 707, 947 |
| AvaI | CYCGRG | 1 cut(s) | 236 |
| BaeGI | GKGCMC | 2 cut(s) | 534, 726 |
| BanII | GRGCYC | 1 cut(s) | 801 |
| BbsI | GAAGAC | 4 cut(s) | 584, 774, 933, 990 |
| Bbv12I | GWGCWC | 2 cut(s) | 534, 726 |
| BccI | CCATC | 3 cut(s) | 213, 293, 543 |
| BcnI | CCSGG | 1 cut(s) | 743 |
| BcoDI | GTCTC | 2 cut(s) | 85, 405 |
| BfaI | CTAG | 3 cut(s) | 143, 335, 561 |
| BisI | GCNGC | 3 cut(s) | 274, 566, 747 |
| BlsI | GCNGC | 3 cut(s) | 275, 567, 748 |
| Bme1390I | CCNGG | 1 cut(s) | 743 |
| BmeT110I | CYCGRG | 1 cut(s) | 236 |
| BmrFI | CCNGG | 1 cut(s) | 743 |
| BpiI | GAAGAC | 4 cut(s) | 584, 774, 933, 990 |
| BpmI | CTGGAG | 1 cut(s) | 67 |
| Bpu10I | CCTNAGC | 1 cut(s) | 690 |
| BpuMI | CCSGG | 1 cut(s) | 743 |
| BsaBI | GATNNNNATC | 2 cut(s) | 903, 909 |
| BsaJI | CCNNGG | 1 cut(s) | 887 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 159, 160, 250, 496, 691 |
| Bse118I | RCCGGY | 1 cut(s) | 46 |
| Bse1I | ACTGG | 3 cut(s) | 84, 161, 197 |
| Bse3DI | GCAATG | 1 cut(s) | 147 |
| Bse8I | GATNNNNATC | 2 cut(s) | 903, 909 |
| BseDI | CCNNGG | 1 cut(s) | 887 |
| BseGI | GGATG | 4 cut(s) | 201, 285, 787, 1000 |
| BseJI | GATNNNNATC | 2 cut(s) | 903, 909 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 159, 160, 250, 496, 691 |
| BseMI | GCAATG | 1 cut(s) | 147 |
| BseNI | ACTGG | 3 cut(s) | 84, 161, 197 |
| BseRI | GAGGAG | 1 cut(s) | 814 |
| BseSI | GKGCMC | 2 cut(s) | 534, 726 |
| BsgI | GTGCAG | 1 cut(s) | 565 |
| Bsh1236I | CGCG | 1 cut(s) | 701 |
| BshFI | GGCC | 2 cut(s) | 565, 764 |
| BsiHKAI | GWGCWC | 2 cut(s) | 534, 726 |
| BsiHKCI | CYCGRG | 1 cut(s) | 236 |
| BsiSI | CCGG | 2 cut(s) | 47, 742 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 159, 160, 250, 496, 691 |
| BsmAI | GTCTC | 2 cut(s) | 85, 405 |
| BsnI | GGCC | 2 cut(s) | 565, 764 |
| BsoBI | CYCGRG | 1 cut(s) | 236 |
| Bsp1286I | GDGCHC | 3 cut(s) | 534, 726, 801 |
| Bsp143I | GATC | 3 cut(s) | 232, 583, 904 |
| BspACI | CCGC | 6 cut(s) | 35, 273, 460, 566, 746, 854 |
| BspANI | GGCC | 2 cut(s) | 565, 764 |
| BspFNI | CGCG | 1 cut(s) | 701 |
| BspPI | GGATC | 1 cut(s) | 899 |
| BspQI | GCTCTTC | 1 cut(s) | 876 |
| BsrDI | GCAATG | 1 cut(s) | 147 |
| BsrFI | RCCGGY | 1 cut(s) | 46 |
| BsrI | ACTGG | 3 cut(s) | 84, 161, 197 |
| BssAI | RCCGGY | 1 cut(s) | 46 |
| BssECI | CCNNGG | 1 cut(s) | 887 |
| BssMI | GATC | 3 cut(s) | 232, 583, 904 |
| BssT1I | CCWWGG | 1 cut(s) | 887 |
| Bst4CI | ACNGT | 4 cut(s) | 176, 482, 529, 832 |
| Bst6I | CTCTTC | 3 cut(s) | 542, 771, 876 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 43 |
| BstC8I | GCNNGC | 1 cut(s) | 389 |
| BstDEI | CTNAG | 3 cut(s) | 326, 690, 1014 |
| BstEII | GGTNACC | 1 cut(s) | 302 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 689 |
| BstF5I | GGATG | 4 cut(s) | 201, 285, 787, 1000 |
| BstFNI | CGCG | 1 cut(s) | 701 |
| BstKTI | GATC | 3 cut(s) | 235, 586, 907 |
| BstMAI | GTCTC | 2 cut(s) | 85, 405 |
| BstMBI | GATC | 3 cut(s) | 232, 583, 904 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 43 |
| BstPI | GGTNACC | 1 cut(s) | 302 |
| BstSCI | CCNGG | 1 cut(s) | 741 |
| BstSLI | GKGCMC | 2 cut(s) | 534, 726 |
| BstUI | CGCG | 1 cut(s) | 701 |
| BstV2I | GAAGAC | 4 cut(s) | 584, 774, 933, 990 |
| BsuRI | GGCC | 2 cut(s) | 565, 764 |
| BtgZI | GCGATG | 1 cut(s) | 353 |
| BtsCI | GGATG | 4 cut(s) | 201, 285, 787, 1000 |
| BtsI | GCAGTG | 1 cut(s) | 609 |
| BtsIMutI | CAGTG | 5 cut(s) | 91, 154, 501, 534, 609 |
| Cac8I | GCNNGC | 1 cut(s) | 389 |
| Cfr10I | RCCGGY | 1 cut(s) | 46 |
| CseI | GACGC | 1 cut(s) | 707 |
| Csp6I | GTAC | 3 cut(s) | 56, 241, 589 |
| CviAII | CATG | 6 cut(s) | 43, 137, 445, 452, 523, 574 |
| CviQI | GTAC | 3 cut(s) | 56, 241, 589 |
| DdeI | CTNAG | 3 cut(s) | 326, 690, 1014 |
| DpnI | GATC | 3 cut(s) | 234, 585, 906 |
| DpnII | GATC | 3 cut(s) | 232, 583, 904 |
| DraI | TTTAAA | 1 cut(s) | 850 |
| DraIII | CACNNNGTG | 1 cut(s) | 455 |
| Eam1104I | CTCTTC | 3 cut(s) | 542, 771, 876 |
| EarI | CTCTTC | 3 cut(s) | 542, 771, 876 |
| EciI | GGCGGA | 1 cut(s) | 475 |
| Eco130I | CCWWGG | 1 cut(s) | 887 |
| Eco24I | GRGCYC | 1 cut(s) | 801 |
| Eco88I | CYCGRG | 1 cut(s) | 236 |
| Eco91I | GGTNACC | 1 cut(s) | 302 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 689 |
| EcoO65I | GGTNACC | 1 cut(s) | 302 |
| EcoRI | GAATTC | 2 cut(s) | 433, 870 |
| EcoT14I | CCWWGG | 1 cut(s) | 887 |
| EcoT38I | GRGCYC | 1 cut(s) | 801 |
| ErhI | CCWWGG | 1 cut(s) | 887 |
| FaeI | CATG | 6 cut(s) | 46, 140, 448, 455, 526, 577 |
| FatI | CATG | 6 cut(s) | 42, 136, 444, 451, 522, 573 |
| FauI | CCCGC | 1 cut(s) | 847 |
| Fnu4HI | GCNGC | 3 cut(s) | 274, 566, 747 |
| FokI | GGATG | 4 cut(s) | 188, 292, 794, 1007 |
| FriOI | GRGCYC | 1 cut(s) | 801 |
| Fsp4HI | GCNGC | 3 cut(s) | 274, 566, 747 |
| FspBI | CTAG | 3 cut(s) | 143, 335, 561 |
| GluI | GCNGC | 3 cut(s) | 274, 566, 747 |
| GsuI | CTGGAG | 1 cut(s) | 67 |
| HaeIII | GGCC | 2 cut(s) | 565, 764 |
| HapII | CCGG | 2 cut(s) | 47, 742 |
| HgaI | GACGC | 1 cut(s) | 707 |
| Hin1II | CATG | 6 cut(s) | 46, 140, 448, 455, 526, 577 |
| HincII | GTYRAC | 2 cut(s) | 472, 715 |
| HindII | GTYRAC | 2 cut(s) | 472, 715 |
| HinfI | GANTC | 4 cut(s) | 116, 929, 986, 998 |
| HpaII | CCGG | 2 cut(s) | 47, 742 |
| HphI | GGTGA | 6 cut(s) | 242, 296, 391, 616, 707, 947 |
| Hpy166II | GTNNAC | 5 cut(s) | 472, 532, 607, 715, 724 |
| Hpy188I | TCNGA | 4 cut(s) | 369, 973, 994, 1003 |
| Hpy188III | TCNNGA | 8 cut(s) | 179, 218, 236, 357, 677, 794, 875, 914 |
| Hpy8I | GTNNAC | 5 cut(s) | 472, 532, 607, 715, 724 |
| HpyAV | CCTTC | 2 cut(s) | 19, 414 |
| HpyCH4III | ACNGT | 4 cut(s) | 176, 482, 529, 832 |
| HpyCH4V | TGCA | 6 cut(s) | 130, 375, 391, 532, 546, 724 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 43 |
| HpyF3I | CTNAG | 3 cut(s) | 326, 690, 1014 |
| Hsp92II | CATG | 6 cut(s) | 46, 140, 448, 455, 526, 577 |
| Kzo9I | GATC | 3 cut(s) | 232, 583, 904 |
| LguI | GCTCTTC | 1 cut(s) | 876 |
| LmnI | GCTCC | 1 cut(s) | 17 |
| MaeI | CTAG | 3 cut(s) | 143, 335, 561 |
| MaeIII | GTNAC | 2 cut(s) | 302, 695 |
| MalI | GATC | 3 cut(s) | 234, 585, 906 |
| MboI | GATC | 3 cut(s) | 232, 583, 904 |
| MboII | GAAGA | 9 cut(s) | 529, 589, 641, 779, 788, 893, 938, 992, 995 |
| MhlI | GDGCHC | 3 cut(s) | 534, 726, 801 |
| MluCI | AATT | 9 cut(s) | 105, 293, 310, 392, 433, 844, 870, 963, 967 |
| MluI | ACGCGT | 1 cut(s) | 699 |
| MlyI | GAGTC | 3 cut(s) | 110, 923, 980 |
| MnlI | CCTC | 7 cut(s) | 545, 738, 754, 766, 772, 835, 934 |
| MseI | TTAA | 4 cut(s) | 171, 840, 849, 966 |
| MslI | CAYNNNNRTG | 1 cut(s) | 527 |
| MspI | CCGG | 2 cut(s) | 47, 742 |
| MspR9I | CCNGG | 1 cut(s) | 743 |
| MvnI | CGCG | 1 cut(s) | 701 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 43 |
| NciI | CCSGG | 1 cut(s) | 743 |
| NdeII | GATC | 3 cut(s) | 232, 583, 904 |
| NlaIII | CATG | 6 cut(s) | 46, 140, 448, 455, 526, 577 |
| NmuCI | GTSAC | 2 cut(s) | 302, 695 |
| PaeR7I | CTCGAG | 1 cut(s) | 236 |
| PciSI | GCTCTTC | 1 cut(s) | 876 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 865, 921 |
| PfeI | GAWTC | 1 cut(s) | 998 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 496 |
| PkrI | GCNGC | 3 cut(s) | 275, 567, 748 |
| PleI | GAGTC | 3 cut(s) | 110, 923, 980 |
| PpsI | GAGTC | 3 cut(s) | 110, 923, 980 |
| PshBI | ATTAAT | 1 cut(s) | 966 |
| PspEI | GGTNACC | 1 cut(s) | 302 |
| RsaI | GTAC | 3 cut(s) | 57, 242, 590 |
| RsaNI | GTAC | 3 cut(s) | 56, 241, 589 |
| RseI | CAYNNNNRTG | 1 cut(s) | 527 |
| SapI | GCTCTTC | 1 cut(s) | 876 |
| SaqAI | TTAA | 4 cut(s) | 171, 840, 849, 966 |
| SatI | GCNGC | 3 cut(s) | 274, 566, 747 |
| Sau3AI | GATC | 3 cut(s) | 232, 583, 904 |
| SchI | GAGTC | 3 cut(s) | 110, 923, 980 |
| ScrFI | CCNGG | 1 cut(s) | 743 |
| SduI | GDGCHC | 3 cut(s) | 534, 726, 801 |
| SetI | ASST | 7 cut(s) | 144, 232, 381, 537, 687, 720, 814 |
| Sfr274I | CTCGAG | 1 cut(s) | 236 |
| SlaI | CTCGAG | 1 cut(s) | 236 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 527 |
| SmlI | CTYRAG | 1 cut(s) | 236 |
| SmoI | CTYRAG | 1 cut(s) | 236 |
| Sse9I | AATT | 9 cut(s) | 105, 293, 310, 392, 433, 844, 870, 963, 967 |
| SsiI | CCGC | 6 cut(s) | 35, 273, 460, 566, 746, 854 |
| SspI | AATATT | 1 cut(s) | 597 |
| SspMI | CTAG | 3 cut(s) | 143, 335, 561 |
| StyD4I | CCNGG | 1 cut(s) | 741 |
| StyI | CCWWGG | 1 cut(s) | 887 |
| TaaI | ACNGT | 4 cut(s) | 176, 482, 529, 832 |
| TaqI | TCGA | 2 cut(s) | 237, 730 |
| TaqII | GACCGA | 1 cut(s) | 596 |
| TasI | AATT | 9 cut(s) | 105, 293, 310, 392, 433, 844, 870, 963, 967 |
| TatI | WGTACW | 1 cut(s) | 588 |
| TauI | GCSGC | 3 cut(s) | 276, 568, 749 |
| TfiI | GAWTC | 1 cut(s) | 998 |
| Tru1I | TTAA | 4 cut(s) | 171, 840, 849, 966 |
| Tru9I | TTAA | 4 cut(s) | 171, 840, 849, 966 |
| TscAI | CASTG | 5 cut(s) | 91, 161, 501, 534, 616 |
| TseFI | GTSAC | 2 cut(s) | 302, 695 |
| Tsp45I | GTSAC | 2 cut(s) | 302, 695 |
| TspDTI | ATGAA | 5 cut(s) | 17, 296, 356, 590, 894 |
| TspRI | CASTG | 5 cut(s) | 91, 161, 501, 534, 616 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 496 |
| VneI | GTGCAC | 2 cut(s) | 530, 722 |
| VspI | ATTAAT | 1 cut(s) | 966 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 689 |
| XapI | RAATTY | 3 cut(s) | 105, 433, 870 |
| XhoI | CTCGAG | 1 cut(s) | 236 |
| XspI | CTAG | 3 cut(s) | 143, 335, 561 |