Transposase-associated domain
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 759 |
| Acc65I | GGTACC | 1 cut(s) | 829 |
| AccB1I | GGYRCC | 1 cut(s) | 829 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 947 |
| AccII | CGCG | 1 cut(s) | 701 |
| AciI | CCGC | 1 cut(s) | 407 |
| AclWI | GGATC | 4 cut(s) | 185, 198, 310, 920 |
| AcoI | YGGCCR | 2 cut(s) | 408, 436 |
| AcsI | RAATTY | 3 cut(s) | 292, 458, 905 |
| AcuI | CTGAAG | 3 cut(s) | 390, 402, 435 |
| AfaI | GTAC | 5 cut(s) | 103, 362, 779, 831, 1096 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 506, 947 |
| AflIII | ACRYGT | 1 cut(s) | 699 |
| AgsI | TTSAA | 8 cut(s) | 98, 292, 475, 559, 596, 875, 1063, 1243 |
| AjnI | CCWGG | 4 cut(s) | 262, 634, 1180, 1195 |
| AluBI | AGCT | 6 cut(s) | 368, 538, 733, 816, 1017, 1049 |
| AluI | AGCT | 6 cut(s) | 368, 538, 733, 816, 1017, 1049 |
| Alw26I | GTCTC | 3 cut(s) | 738, 894, 931 |
| AlwI | GGATC | 4 cut(s) | 185, 198, 310, 920 |
| Ama87I | CYCGRG | 1 cut(s) | 620 |
| AoxI | GGCC | 5 cut(s) | 48, 408, 436, 1100, 1183 |
| ApeKI | GCWGC | 2 cut(s) | 166, 404 |
| ApoI | RAATTY | 3 cut(s) | 292, 458, 905 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 62, 630 |
| Asp718I | GGTACC | 1 cut(s) | 829 |
| AspLEI | GCGC | 1 cut(s) | 770 |
| AspS9I | GGNCC | 4 cut(s) | 216, 251, 419, 1184 |
| AsuC2I | CCSGG | 5 cut(s) | 52, 300, 501, 621, 622 |
| AsuHPI | GGTGA | 2 cut(s) | 239, 574 |
| AvaI | CYCGRG | 1 cut(s) | 620 |
| AvaII | GGWCC | 3 cut(s) | 216, 251, 419 |
| BamHI | GGATCC | 1 cut(s) | 190 |
| BanI | GGYRCC | 1 cut(s) | 829 |
| BauI | CACGAG | 1 cut(s) | 942 |
| BbvI | GCAGC | 2 cut(s) | 178, 416 |
| BccI | CCATC | 4 cut(s) | 176, 430, 941, 1016 |
| BceAI | ACGGC | 1 cut(s) | 451 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 959, 993 |
| BciT130I | CCWGG | 4 cut(s) | 264, 636, 1182, 1197 |
| BcnI | CCSGG | 5 cut(s) | 52, 300, 501, 621, 622 |
| BcoDI | GTCTC | 3 cut(s) | 738, 894, 931 |
| BfaI | CTAG | 3 cut(s) | 771, 1046, 1050 |
| BfmI | CTRYAG | 1 cut(s) | 36 |
| BfoI | RGCGCY | 1 cut(s) | 771 |
| BisI | GCNGC | 3 cut(s) | 167, 405, 408 |
| BlsI | GCNGC | 3 cut(s) | 168, 406, 409 |
| BmcAI | AGTACT | 1 cut(s) | 1096 |
| Bme1390I | CCNGG | 9 cut(s) | 52, 264, 300, 501, 621, 622, 636, 1182, 1197 |
| Bme18I | GGWCC | 3 cut(s) | 216, 251, 419 |
| BmeT110I | CYCGRG | 1 cut(s) | 620 |
| BmgT120I | GGNCC | 4 cut(s) | 216, 251, 419, 1184 |
| BmiI | GGNNCC | 4 cut(s) | 192, 640, 831, 1224 |
| BmrFI | CCNGG | 9 cut(s) | 52, 264, 300, 501, 621, 622, 636, 1182, 1197 |
| BmsI | GCATC | 6 cut(s) | 178, 337, 367, 439, 562, 584 |
| BoxI | GACNNNNGTC | 1 cut(s) | 702 |
| BpuMI | CCSGG | 5 cut(s) | 52, 300, 501, 621, 622 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1215 |
| BsaI | GGTCTC | 2 cut(s) | 738, 931 |
| BsaJI | CCNNGG | 7 cut(s) | 212, 223, 499, 620, 621, 1133, 1180 |
| BsaWI | WCCGGW | 1 cut(s) | 1070 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 800, 830 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 506, 947 |
| Bse118I | RCCGGY | 1 cut(s) | 826 |
| Bse1I | ACTGG | 1 cut(s) | 833 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1215 |
| BseBI | CCWGG | 4 cut(s) | 264, 636, 1182, 1197 |
| BseDI | CCNNGG | 7 cut(s) | 212, 223, 499, 620, 621, 1133, 1180 |
| BseGI | GGATG | 5 cut(s) | 187, 207, 422, 961, 1176 |
| BseJI | GATNNNNATC | 1 cut(s) | 1215 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 506, 947 |
| BseNI | ACTGG | 1 cut(s) | 833 |
| BseRI | GAGGAG | 1 cut(s) | 401 |
| BseXI | GCAGC | 2 cut(s) | 178, 416 |
| BsgI | GTGCAG | 1 cut(s) | 525 |
| Bsh1236I | CGCG | 1 cut(s) | 701 |
| BshFI | GGCC | 5 cut(s) | 50, 410, 438, 1102, 1185 |
| BshNI | GGYRCC | 1 cut(s) | 829 |
| BsiHKCI | CYCGRG | 1 cut(s) | 620 |
| BsiSI | CCGG | 6 cut(s) | 51, 300, 501, 621, 827, 1071 |
| BslFI | GGGAC | 1 cut(s) | 1072 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 506, 947 |
| BsmAI | GTCTC | 3 cut(s) | 738, 894, 931 |
| BsmFI | GGGAC | 1 cut(s) | 1072 |
| BsmI | GAATGC | 4 cut(s) | 62, 64, 350, 919 |
| BsnI | GGCC | 5 cut(s) | 50, 410, 438, 1102, 1185 |
| Bso31I | GGTCTC | 2 cut(s) | 738, 931 |
| BsoBI | CYCGRG | 1 cut(s) | 620 |
| Bsp143I | GATC | 3 cut(s) | 190, 302, 925 |
| Bsp19I | CCATGG | 1 cut(s) | 223 |
| BspACI | CCGC | 1 cut(s) | 407 |
| BspANI | GGCC | 5 cut(s) | 50, 410, 438, 1102, 1185 |
| BspFNI | CGCG | 1 cut(s) | 701 |
| BspLI | GGNNCC | 4 cut(s) | 192, 640, 831, 1224 |
| BspMAI | CTGCAG | 1 cut(s) | 40 |
| BspPI | GGATC | 4 cut(s) | 185, 198, 310, 920 |
| BspT107I | GGYRCC | 1 cut(s) | 829 |
| BspTNI | GGTCTC | 2 cut(s) | 738, 931 |
| BsrFI | RCCGGY | 1 cut(s) | 826 |
| BsrI | ACTGG | 1 cut(s) | 833 |
| BssAI | RCCGGY | 1 cut(s) | 826 |
| BssECI | CCNNGG | 7 cut(s) | 212, 223, 499, 620, 621, 1133, 1180 |
| BssMI | GATC | 3 cut(s) | 190, 302, 925 |
| BssSI | CACGAG | 1 cut(s) | 942 |
| BssT1I | CCWWGG | 3 cut(s) | 212, 223, 1133 |
| Bst2BI | CACGAG | 1 cut(s) | 942 |
| Bst2UI | CCWGG | 4 cut(s) | 264, 636, 1182, 1197 |
| Bst4CI | ACNGT | 3 cut(s) | 563, 1094, 1117 |
| Bst6I | CTCTTC | 2 cut(s) | 378, 783 |
| BstC8I | GCNNGC | 1 cut(s) | 87 |
| BstDEI | CTNAG | 1 cut(s) | 79 |
| BstDSI | CCRYGG | 1 cut(s) | 223 |
| BstF5I | GGATG | 5 cut(s) | 187, 207, 422, 961, 1176 |
| BstFNI | CGCG | 1 cut(s) | 701 |
| BstH2I | RGCGCY | 1 cut(s) | 771 |
| BstHHI | GCGC | 1 cut(s) | 770 |
| BstKTI | GATC | 3 cut(s) | 193, 305, 928 |
| BstMAI | GTCTC | 3 cut(s) | 738, 894, 931 |
| BstMBI | GATC | 3 cut(s) | 190, 302, 925 |
| BstNI | CCWGG | 4 cut(s) | 264, 636, 1182, 1197 |
| BstNSI | RCATGY | 4 cut(s) | 89, 361, 721, 801 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 702 |
| BstSCI | CCNGG | 9 cut(s) | 50, 262, 298, 499, 619, 620, 634, 1180, 1195 |
| BstSFI | CTRYAG | 1 cut(s) | 36 |
| BstUI | CGCG | 1 cut(s) | 701 |
| BstV1I | GCAGC | 2 cut(s) | 178, 416 |
| BstX2I | RGATCY | 2 cut(s) | 190, 302 |
| BstYI | RGATCY | 2 cut(s) | 190, 302 |
| BsuRI | GGCC | 5 cut(s) | 50, 410, 438, 1102, 1185 |
| BtgI | CCRYGG | 1 cut(s) | 223 |
| BtsCI | GGATG | 5 cut(s) | 187, 207, 422, 961, 1176 |
| BtsI | GCAGTG | 1 cut(s) | 33 |
| BtsIMutI | CAGTG | 2 cut(s) | 33, 411 |
| Cac8I | GCNNGC | 1 cut(s) | 87 |
| CfoI | GCGC | 1 cut(s) | 770 |
| Cfr10I | RCCGGY | 1 cut(s) | 826 |
| Cfr13I | GGNCC | 4 cut(s) | 216, 251, 419, 1184 |
| Cfr9I | CCCGGG | 1 cut(s) | 620 |
| CseI | GACGC | 1 cut(s) | 707 |
| Csp6I | GTAC | 5 cut(s) | 102, 361, 778, 830, 1095 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1079, 1114 |
| CviAII | CATG | 8 cut(s) | 86, 224, 358, 718, 798, 886, 1144, 1159 |
| CviQI | GTAC | 5 cut(s) | 102, 361, 778, 830, 1095 |
| DdeI | CTNAG | 1 cut(s) | 79 |
| DpnI | GATC | 3 cut(s) | 192, 304, 927 |
| DpnII | GATC | 3 cut(s) | 190, 302, 925 |
| EaeI | YGGCCR | 2 cut(s) | 408, 436 |
| Eam1104I | CTCTTC | 2 cut(s) | 378, 783 |
| EarI | CTCTTC | 2 cut(s) | 378, 783 |
| Eco130I | CCWWGG | 3 cut(s) | 212, 223, 1133 |
| Eco31I | GGTCTC | 2 cut(s) | 738, 931 |
| Eco47I | GGWCC | 3 cut(s) | 216, 251, 419 |
| Eco57I | CTGAAG | 3 cut(s) | 390, 402, 435 |
| Eco88I | CYCGRG | 1 cut(s) | 620 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1184 |
| EcoRII | CCWGG | 4 cut(s) | 262, 634, 1180, 1195 |
| EcoT14I | CCWWGG | 3 cut(s) | 212, 223, 1133 |
| EcoT22I | ATGCAT | 4 cut(s) | 64, 352, 577, 1145 |
| ErhI | CCWWGG | 3 cut(s) | 212, 223, 1133 |
| FaeI | CATG | 8 cut(s) | 89, 227, 361, 721, 801, 889, 1147, 1162 |
| FaqI | GGGAC | 1 cut(s) | 1072 |
| FatI | CATG | 8 cut(s) | 85, 223, 357, 717, 797, 885, 1143, 1158 |
| Fnu4HI | GCNGC | 3 cut(s) | 167, 405, 408 |
| FokI | GGATG | 5 cut(s) | 194, 194, 409, 948, 1163 |
| Fsp4HI | GCNGC | 3 cut(s) | 167, 405, 408 |
| FspBI | CTAG | 3 cut(s) | 771, 1046, 1050 |
| GlaI | GCGC | 1 cut(s) | 769 |
| GluI | GCNGC | 3 cut(s) | 167, 405, 408 |
| HaeII | RGCGCY | 1 cut(s) | 771 |
| HaeIII | GGCC | 5 cut(s) | 50, 410, 438, 1102, 1185 |
| HapII | CCGG | 6 cut(s) | 51, 300, 501, 621, 827, 1071 |
| HgaI | GACGC | 1 cut(s) | 707 |
| HhaI | GCGC | 1 cut(s) | 770 |
| Hin1II | CATG | 8 cut(s) | 89, 227, 361, 721, 801, 889, 1147, 1162 |
| Hin6I | GCGC | 1 cut(s) | 768 |
| HinP1I | GCGC | 1 cut(s) | 768 |
| HindIII | AAGCTT | 1 cut(s) | 731 |
| HinfI | GANTC | 3 cut(s) | 320, 971, 1059 |
| HpaII | CCGG | 6 cut(s) | 51, 300, 501, 621, 827, 1071 |
| HphI | GGTGA | 2 cut(s) | 239, 574 |
| Hpy166II | GTNNAC | 3 cut(s) | 205, 582, 1120 |
| Hpy188I | TCNGA | 5 cut(s) | 195, 729, 904, 925, 1021 |
| Hpy188III | TCNNGA | 3 cut(s) | 529, 929, 1220 |
| Hpy8I | GTNNAC | 3 cut(s) | 205, 582, 1120 |
| Hpy99I | CGWCG | 1 cut(s) | 701 |
| HpyAV | CCTTC | 3 cut(s) | 162, 410, 1077 |
| HpyCH4III | ACNGT | 3 cut(s) | 563, 1094, 1117 |
| HpyCH4IV | ACGT | 1 cut(s) | 958 |
| HpyF3I | CTNAG | 1 cut(s) | 79 |
| HpySE526I | ACGT | 1 cut(s) | 958 |
| Hsp92II | CATG | 8 cut(s) | 89, 227, 361, 721, 801, 889, 1147, 1162 |
| HspAI | GCGC | 1 cut(s) | 768 |
| KpnI | GGTACC | 1 cut(s) | 833 |
| Kzo9I | GATC | 3 cut(s) | 190, 302, 925 |
| LmnI | GCTCC | 2 cut(s) | 821, 1022 |
| Lsp1109I | GCAGC | 2 cut(s) | 178, 416 |
| LweI | GCATC | 6 cut(s) | 178, 337, 367, 439, 562, 584 |
| MaeI | CTAG | 3 cut(s) | 771, 1046, 1050 |
| MaeII | ACGT | 1 cut(s) | 958 |
| MaeIII | GTNAC | 2 cut(s) | 848, 1052 |
| MalI | GATC | 3 cut(s) | 192, 304, 927 |
| MboI | GATC | 3 cut(s) | 190, 302, 925 |
| MboII | GAAGA | 4 cut(s) | 297, 383, 395, 800 |
| MfeI | CAATTG | 1 cut(s) | 587 |
| MflI | RGATCY | 2 cut(s) | 190, 302 |
| MluI | ACGCGT | 1 cut(s) | 699 |
| MmeI | TCCRAC | 1 cut(s) | 545 |
| MnlI | CCTC | 8 cut(s) | 40, 283, 379, 627, 778, 784, 910, 1140 |
| Mph1103I | ATGCAT | 4 cut(s) | 64, 352, 577, 1145 |
| MroXI | GAANNNNTTC | 2 cut(s) | 62, 630 |
| MseI | TTAA | 4 cut(s) | 602, 650, 666, 837 |
| MspA1I | CMGCKG | 1 cut(s) | 407 |
| MspI | CCGG | 6 cut(s) | 51, 300, 501, 621, 827, 1071 |
| MspR9I | CCNGG | 9 cut(s) | 52, 264, 300, 501, 621, 622, 636, 1182, 1197 |
| MunI | CAATTG | 1 cut(s) | 587 |
| Mva1269I | GAATGC | 4 cut(s) | 62, 64, 350, 919 |
| MvaI | CCWGG | 4 cut(s) | 264, 636, 1182, 1197 |
| MvnI | CGCG | 1 cut(s) | 701 |
| NciI | CCSGG | 5 cut(s) | 52, 300, 501, 621, 622 |
| NcoI | CCATGG | 1 cut(s) | 223 |
| NdeII | GATC | 3 cut(s) | 190, 302, 925 |
| NlaIII | CATG | 8 cut(s) | 89, 227, 361, 721, 801, 889, 1147, 1162 |
| NlaIV | GGNNCC | 4 cut(s) | 192, 640, 831, 1224 |
| NmuCI | GTSAC | 1 cut(s) | 1052 |
| NsiI | ATGCAT | 4 cut(s) | 64, 352, 577, 1145 |
| NspI | RCATGY | 4 cut(s) | 89, 361, 721, 801 |
| PaeI | GCATGC | 1 cut(s) | 89 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 360, 733, 1033 |
| PctI | GAATGC | 4 cut(s) | 62, 64, 350, 919 |
| PdmI | GAANNNNTTC | 2 cut(s) | 62, 630 |
| PfeI | GAWTC | 3 cut(s) | 320, 971, 1059 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 947 |
| PfoI | TCCNGGA | 1 cut(s) | 1195 |
| PkrI | GCNGC | 3 cut(s) | 168, 406, 409 |
| PshAI | GACNNNNGTC | 1 cut(s) | 702 |
| PsiI | TTATAA | 1 cut(s) | 759 |
| Psp6I | CCWGG | 4 cut(s) | 262, 634, 1180, 1195 |
| PspGI | CCWGG | 4 cut(s) | 262, 634, 1180, 1195 |
| PspN4I | GGNNCC | 4 cut(s) | 192, 640, 831, 1224 |
| PspPI | GGNCC | 4 cut(s) | 216, 251, 419, 1184 |
| PstI | CTGCAG | 1 cut(s) | 40 |
| PsuI | RGATCY | 2 cut(s) | 190, 302 |
| RsaI | GTAC | 5 cut(s) | 103, 362, 779, 831, 1096 |
| RsaNI | GTAC | 5 cut(s) | 102, 361, 778, 830, 1095 |
| SaqAI | TTAA | 4 cut(s) | 602, 650, 666, 837 |
| SatI | GCNGC | 3 cut(s) | 167, 405, 408 |
| Sau3AI | GATC | 3 cut(s) | 190, 302, 925 |
| Sau96I | GGNCC | 4 cut(s) | 216, 251, 419, 1184 |
| ScaI | AGTACT | 1 cut(s) | 1096 |
| ScrFI | CCNGG | 9 cut(s) | 52, 264, 300, 501, 621, 622, 636, 1182, 1197 |
| SfaNI | GCATC | 6 cut(s) | 178, 337, 367, 439, 562, 584 |
| SfcI | CTRYAG | 1 cut(s) | 36 |
| SinI | GGWCC | 3 cut(s) | 216, 251, 419 |
| SmaI | CCCGGG | 1 cut(s) | 622 |
| SphI | GCATGC | 1 cut(s) | 89 |
| SsiI | CCGC | 1 cut(s) | 407 |
| SspMI | CTAG | 3 cut(s) | 771, 1046, 1050 |
| StyD4I | CCNGG | 9 cut(s) | 50, 262, 298, 499, 619, 620, 634, 1180, 1195 |
| StyI | CCWWGG | 3 cut(s) | 212, 223, 1133 |
| TaaI | ACNGT | 3 cut(s) | 563, 1094, 1117 |
| TaiI | ACGT | 1 cut(s) | 961 |
| TaqI | TCGA | 2 cut(s) | 696, 1027 |
| TaqII | GACCGA | 2 cut(s) | 233, 762 |
| TatI | WGTACW | 2 cut(s) | 101, 1094 |
| TauI | GCSGC | 1 cut(s) | 410 |
| TfiI | GAWTC | 3 cut(s) | 320, 971, 1059 |
| Tru1I | TTAA | 4 cut(s) | 602, 650, 666, 837 |
| Tru9I | TTAA | 4 cut(s) | 602, 650, 666, 837 |
| TscAI | CASTG | 2 cut(s) | 40, 418 |
| TseFI | GTSAC | 1 cut(s) | 1052 |
| TseI | GCWGC | 2 cut(s) | 166, 404 |
| Tsp45I | GTSAC | 1 cut(s) | 1052 |
| TspDTI | ATGAA | 4 cut(s) | 652, 874, 1160, 1251 |
| TspGWI | ACGGA | 1 cut(s) | 1071 |
| TspMI | CCCGGG | 1 cut(s) | 620 |
| TspRI | CASTG | 2 cut(s) | 40, 418 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 947 |
| VpaK11BI | GGWCC | 3 cut(s) | 216, 251, 419 |
| XapI | RAATTY | 3 cut(s) | 292, 458, 905 |
| XceI | RCATGY | 4 cut(s) | 89, 361, 721, 801 |
| XmaI | CCCGGG | 1 cut(s) | 620 |
| XmnI | GAANNNNTTC | 2 cut(s) | 62, 630 |
| XspI | CTAG | 3 cut(s) | 771, 1046, 1050 |
| ZrmI | AGTACT | 1 cut(s) | 1096 |
| Zsp2I | ATGCAT | 4 cut(s) | 64, 352, 577, 1145 |