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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 1013 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 80, 728 |
| AccBSI | CCGCTC | 1 cut(s) | 174 |
| AciI | CCGC | 3 cut(s) | 172, 418, 1056 |
| AclWI | GGATC | 2 cut(s) | 392, 640 |
| AcsI | RAATTY | 4 cut(s) | 34, 243, 600, 1178 |
| AcuI | CTGAAG | 1 cut(s) | 809 |
| AfaI | GTAC | 2 cut(s) | 1038, 1065 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 29, 80, 178, 728 |
| AflII | CTTAAG | 1 cut(s) | 773 |
| AgsI | TTSAA | 8 cut(s) | 89, 217, 541, 571, 589, 606, 741, 1091 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1035, 1067 |
| AluBI | AGCT | 6 cut(s) | 185, 409, 714, 772, 904, 940 |
| AluI | AGCT | 6 cut(s) | 185, 409, 714, 772, 904, 940 |
| Alw26I | GTCTC | 2 cut(s) | 712, 1115 |
| AlwI | GGATC | 2 cut(s) | 392, 640 |
| AoxI | GGCC | 2 cut(s) | 860, 1057 |
| ApeKI | GCWGC | 7 cut(s) | 182, 460, 940, 1146, 1149, 1152, 1155 |
| ApoI | RAATTY | 4 cut(s) | 34, 243, 600, 1178 |
| AspS9I | GGNCC | 5 cut(s) | 6, 136, 860, 1015, 1058 |
| AsuHPI | GGTGA | 3 cut(s) | 155, 308, 404 |
| AvaII | GGWCC | 3 cut(s) | 6, 136, 1015 |
| BbsI | GAAGAC | 2 cut(s) | 1112, 1173 |
| BbvI | GCAGC | 7 cut(s) | 194, 472, 927, 1133, 1136, 1139, 1142 |
| BccI | CCATC | 7 cut(s) | 188, 383, 623, 722, 1003, 1026, 1240 |
| BciVI | GTATCC | 1 cut(s) | 725 |
| BclI | TGATCA | 1 cut(s) | 160 |
| BcoDI | GTCTC | 2 cut(s) | 712, 1115 |
| BfaI | CTAG | 2 cut(s) | 107, 636 |
| BfrI | CTTAAG | 1 cut(s) | 773 |
| BfuI | GTATCC | 1 cut(s) | 725 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 457 |
| BglII | AGATCT | 2 cut(s) | 690, 777 |
| BisI | GCNGC | 8 cut(s) | 183, 461, 941, 1057, 1147, 1150, 1153, 1156 |
| BlsI | GCNGC | 8 cut(s) | 184, 462, 942, 1058, 1148, 1151, 1154, 1157 |
| Bme18I | GGWCC | 3 cut(s) | 6, 136, 1015 |
| BmgT120I | GGNCC | 5 cut(s) | 6, 136, 860, 1015, 1058 |
| BmiI | GGNNCC | 3 cut(s) | 199, 861, 1060 |
| BmsI | GCATC | 2 cut(s) | 355, 483 |
| BpiI | GAAGAC | 2 cut(s) | 1112, 1173 |
| BpmI | CTGGAG | 1 cut(s) | 1168 |
| BpuEI | CTTGAG | 2 cut(s) | 736, 998 |
| Bsa29I | ATCGAT | 2 cut(s) | 211, 1226 |
| BsaI | GGTCTC | 1 cut(s) | 712 |
| BsaJI | CCNNGG | 1 cut(s) | 201 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 29, 80, 178, 728 |
| Bse1I | ACTGG | 2 cut(s) | 74, 750 |
| BseCI | ATCGAT | 2 cut(s) | 211, 1226 |
| BseDI | CCNNGG | 1 cut(s) | 201 |
| BseGI | GGATG | 1 cut(s) | 1083 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 29, 80, 178, 728 |
| BseNI | ACTGG | 2 cut(s) | 74, 750 |
| BseRI | GAGGAG | 2 cut(s) | 695, 782 |
| BseXI | GCAGC | 7 cut(s) | 194, 472, 927, 1133, 1136, 1139, 1142 |
| BshFI | GGCC | 2 cut(s) | 862, 1059 |
| BshVI | ATCGAT | 2 cut(s) | 211, 1226 |
| BslFI | GGGAC | 1 cut(s) | 778 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 29, 80, 178, 728 |
| BsmAI | GTCTC | 2 cut(s) | 712, 1115 |
| BsmFI | GGGAC | 1 cut(s) | 778 |
| BsnI | GGCC | 2 cut(s) | 862, 1059 |
| Bso31I | GGTCTC | 1 cut(s) | 712 |
| Bsp1407I | TGTACA | 1 cut(s) | 1036 |
| Bsp143I | GATC | 6 cut(s) | 160, 397, 632, 690, 777, 1213 |
| BspACI | CCGC | 3 cut(s) | 172, 418, 1056 |
| BspANI | GGCC | 2 cut(s) | 862, 1059 |
| BspDI | ATCGAT | 2 cut(s) | 211, 1226 |
| BspLI | GGNNCC | 3 cut(s) | 199, 861, 1060 |
| BspPI | GGATC | 2 cut(s) | 392, 640 |
| BspTI | CTTAAG | 1 cut(s) | 773 |
| BspTNI | GGTCTC | 1 cut(s) | 712 |
| BsrBI | CCGCTC | 1 cut(s) | 174 |
| BsrGI | TGTACA | 1 cut(s) | 1036 |
| BsrI | ACTGG | 2 cut(s) | 74, 750 |
| BssECI | CCNNGG | 1 cut(s) | 201 |
| BssMI | GATC | 6 cut(s) | 160, 397, 632, 690, 777, 1213 |
| Bst4CI | ACNGT | 4 cut(s) | 228, 737, 1111, 1204 |
| BstAFI | CTTAAG | 1 cut(s) | 773 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 466 |
| BstAUI | TGTACA | 1 cut(s) | 1036 |
| BstC8I | GCNNGC | 2 cut(s) | 974, 1144 |
| BstF5I | GGATG | 1 cut(s) | 1083 |
| BstKTI | GATC | 6 cut(s) | 163, 400, 635, 693, 780, 1216 |
| BstMAI | GTCTC | 2 cut(s) | 712, 1115 |
| BstMBI | GATC | 6 cut(s) | 160, 397, 632, 690, 777, 1213 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 415, 457, 466, 1152, 1155 |
| BstNSI | RCATGY | 3 cut(s) | 72, 128, 976 |
| BstV1I | GCAGC | 7 cut(s) | 194, 472, 927, 1133, 1136, 1139, 1142 |
| BstV2I | GAAGAC | 2 cut(s) | 1112, 1173 |
| BstX2I | RGATCY | 3 cut(s) | 632, 690, 777 |
| BstYI | RGATCY | 3 cut(s) | 632, 690, 777 |
| Bsu15I | ATCGAT | 2 cut(s) | 211, 1226 |
| BsuI | GTATCC | 1 cut(s) | 725 |
| BsuRI | GGCC | 2 cut(s) | 862, 1059 |
| BsuTUI | ATCGAT | 2 cut(s) | 211, 1226 |
| BtsCI | GGATG | 1 cut(s) | 1083 |
| BtsIMutI | CAGTG | 2 cut(s) | 1116, 1209 |
| Cac8I | GCNNGC | 2 cut(s) | 974, 1144 |
| Cfr13I | GGNCC | 5 cut(s) | 6, 136, 860, 1015, 1058 |
| ClaI | ATCGAT | 2 cut(s) | 211, 1226 |
| CseI | GACGC | 2 cut(s) | 464, 605 |
| Csp6I | GTAC | 2 cut(s) | 1037, 1064 |
| CviAII | CATG | 8 cut(s) | 69, 125, 133, 158, 490, 797, 806, 973 |
| CviQI | GTAC | 2 cut(s) | 1037, 1064 |
| DpnI | GATC | 6 cut(s) | 162, 399, 634, 692, 779, 1215 |
| DpnII | GATC | 6 cut(s) | 160, 397, 632, 690, 777, 1213 |
| DraI | TTTAAA | 1 cut(s) | 675 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1013 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1013 |
| Eco31I | GGTCTC | 1 cut(s) | 712 |
| Eco47I | GGWCC | 3 cut(s) | 6, 136, 1015 |
| Eco57I | CTGAAG | 1 cut(s) | 809 |
| EcoT22I | ATGCAT | 2 cut(s) | 130, 974 |
| FaeI | CATG | 8 cut(s) | 72, 128, 136, 161, 493, 800, 809, 976 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 551, 583, 677, 709, 1032, 1064 |
| FaqI | GGGAC | 1 cut(s) | 778 |
| FatI | CATG | 8 cut(s) | 68, 124, 132, 157, 489, 796, 805, 972 |
| FauNDI | CATATG | 1 cut(s) | 28 |
| FbaI | TGATCA | 1 cut(s) | 160 |
| Fnu4HI | GCNGC | 8 cut(s) | 183, 461, 941, 1057, 1147, 1150, 1153, 1156 |
| FokI | GGATG | 1 cut(s) | 1090 |
| Fsp4HI | GCNGC | 8 cut(s) | 183, 461, 941, 1057, 1147, 1150, 1153, 1156 |
| FspBI | CTAG | 2 cut(s) | 107, 636 |
| GluI | GCNGC | 8 cut(s) | 183, 461, 941, 1057, 1147, 1150, 1153, 1156 |
| GsuI | CTGGAG | 1 cut(s) | 1168 |
| HaeIII | GGCC | 2 cut(s) | 862, 1059 |
| HgaI | GACGC | 2 cut(s) | 464, 605 |
| Hin1II | CATG | 8 cut(s) | 72, 128, 136, 161, 493, 800, 809, 976 |
| HincII | GTYRAC | 1 cut(s) | 911 |
| HindII | GTYRAC | 1 cut(s) | 911 |
| HindIII | AAGCTT | 1 cut(s) | 407 |
| HinfI | GANTC | 1 cut(s) | 898 |
| HphI | GGTGA | 3 cut(s) | 155, 308, 404 |
| Hpy166II | GTNNAC | 3 cut(s) | 6, 911, 1066 |
| Hpy188I | TCNGA | 4 cut(s) | 241, 621, 789, 897 |
| Hpy188III | TCNNGA | 3 cut(s) | 485, 538, 1185 |
| Hpy8I | GTNNAC | 3 cut(s) | 6, 911, 1066 |
| Hpy99I | CGWCG | 1 cut(s) | 621 |
| HpyAV | CCTTC | 3 cut(s) | 49, 178, 1079 |
| HpyCH4III | ACNGT | 4 cut(s) | 228, 737, 1111, 1204 |
| HpyCH4IV | ACGT | 1 cut(s) | 1008 |
| HpyCH4V | TGCA | 4 cut(s) | 26, 128, 496, 972 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 415, 457, 466, 1152, 1155 |
| HpySE526I | ACGT | 1 cut(s) | 1008 |
| Hsp92II | CATG | 8 cut(s) | 72, 128, 136, 161, 493, 800, 809, 976 |
| Ksp22I | TGATCA | 1 cut(s) | 160 |
| Kzo9I | GATC | 6 cut(s) | 160, 397, 632, 690, 777, 1213 |
| LmnI | GCTCC | 1 cut(s) | 769 |
| LpnPI | CCDG | 8 cut(s) | 27, 36, 87, 738, 763, 929, 1156, 1198 |
| Lsp1109I | GCAGC | 7 cut(s) | 194, 472, 927, 1133, 1136, 1139, 1142 |
| LweI | GCATC | 2 cut(s) | 355, 483 |
| MaeI | CTAG | 2 cut(s) | 107, 636 |
| MaeII | ACGT | 1 cut(s) | 1008 |
| MalI | GATC | 6 cut(s) | 162, 399, 634, 692, 779, 1215 |
| MbiI | CCGCTC | 1 cut(s) | 174 |
| MboI | GATC | 6 cut(s) | 160, 397, 632, 690, 777, 1213 |
| MboII | GAAGA | 7 cut(s) | 143, 430, 436, 439, 1117, 1126, 1178 |
| MflI | RGATCY | 3 cut(s) | 632, 690, 777 |
| MluCI | AATT | 6 cut(s) | 34, 243, 600, 611, 1026, 1178 |
| MmeI | TCCRAC | 2 cut(s) | 599, 1055 |
| Mph1103I | ATGCAT | 2 cut(s) | 130, 974 |
| MseI | TTAA | 7 cut(s) | 230, 267, 347, 674, 774, 783, 839 |
| MspA1I | CMGCKG | 1 cut(s) | 904 |
| MspCI | CTTAAG | 1 cut(s) | 773 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 415, 457, 466, 1152, 1155 |
| NdeI | CATATG | 1 cut(s) | 28 |
| NdeII | GATC | 6 cut(s) | 160, 397, 632, 690, 777, 1213 |
| NlaIII | CATG | 8 cut(s) | 72, 128, 136, 161, 493, 800, 809, 976 |
| NlaIV | GGNNCC | 3 cut(s) | 199, 861, 1060 |
| NsiI | ATGCAT | 2 cut(s) | 130, 974 |
| NspI | RCATGY | 3 cut(s) | 72, 128, 976 |
| PaeI | GCATGC | 1 cut(s) | 976 |
| PfeI | GAWTC | 1 cut(s) | 898 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 80, 728 |
| PkrI | GCNGC | 8 cut(s) | 184, 462, 942, 1058, 1148, 1151, 1154, 1157 |
| PspN4I | GGNNCC | 3 cut(s) | 199, 861, 1060 |
| PspPI | GGNCC | 5 cut(s) | 6, 136, 860, 1015, 1058 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1029, 1061 |
| PsuI | RGATCY | 3 cut(s) | 632, 690, 777 |
| PvuII | CAGCTG | 1 cut(s) | 904 |
| RsaI | GTAC | 2 cut(s) | 1038, 1065 |
| RsaNI | GTAC | 2 cut(s) | 1037, 1064 |
| SaqAI | TTAA | 7 cut(s) | 230, 267, 347, 674, 774, 783, 839 |
| SatI | GCNGC | 8 cut(s) | 183, 461, 941, 1057, 1147, 1150, 1153, 1156 |
| Sau3AI | GATC | 6 cut(s) | 160, 397, 632, 690, 777, 1213 |
| Sau96I | GGNCC | 5 cut(s) | 6, 136, 860, 1015, 1058 |
| SfaNI | GCATC | 2 cut(s) | 355, 483 |
| SinI | GGWCC | 3 cut(s) | 6, 136, 1015 |
| SmlI | CTYRAG | 3 cut(s) | 715, 773, 977 |
| SmoI | CTYRAG | 3 cut(s) | 715, 773, 977 |
| SphI | GCATGC | 1 cut(s) | 976 |
| Sse9I | AATT | 6 cut(s) | 34, 243, 600, 611, 1026, 1178 |
| SsiI | CCGC | 3 cut(s) | 172, 418, 1056 |
| SspI | AATATT | 3 cut(s) | 265, 511, 745 |
| SspMI | CTAG | 2 cut(s) | 107, 636 |
| TaaI | ACNGT | 4 cut(s) | 228, 737, 1111, 1204 |
| TaiI | ACGT | 1 cut(s) | 1011 |
| TaqI | TCGA | 4 cut(s) | 211, 325, 1216, 1226 |
| TasI | AATT | 6 cut(s) | 34, 243, 600, 611, 1026, 1178 |
| TatI | WGTACW | 1 cut(s) | 1036 |
| TauI | GCSGC | 1 cut(s) | 1059 |
| TfiI | GAWTC | 1 cut(s) | 898 |
| Tru1I | TTAA | 7 cut(s) | 230, 267, 347, 674, 774, 783, 839 |
| Tru9I | TTAA | 7 cut(s) | 230, 267, 347, 674, 774, 783, 839 |
| TscAI | CASTG | 2 cut(s) | 1116, 1209 |
| TseI | GCWGC | 7 cut(s) | 182, 460, 940, 1146, 1149, 1152, 1155 |
| TspDTI | ATGAA | 4 cut(s) | 560, 1019, 1179, 1190 |
| TspGWI | ACGGA | 1 cut(s) | 318 |
| TspRI | CASTG | 2 cut(s) | 1116, 1209 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 80, 728 |
| Vha464I | CTTAAG | 1 cut(s) | 773 |
| VpaK11BI | GGWCC | 3 cut(s) | 6, 136, 1015 |
| XapI | RAATTY | 4 cut(s) | 34, 243, 600, 1178 |
| XceI | RCATGY | 3 cut(s) | 72, 128, 976 |
| XspI | CTAG | 2 cut(s) | 107, 636 |
| Zsp2I | ATGCAT | 2 cut(s) | 130, 974 |