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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 883 |
| AccIII | TCCGGA | 1 cut(s) | 112 |
| AclI | AACGTT | 1 cut(s) | 388 |
| AclWI | GGATC | 2 cut(s) | 256, 794 |
| AcoI | YGGCCR | 1 cut(s) | 702 |
| AcsI | RAATTY | 2 cut(s) | 433, 992 |
| AcyI | GRCGYC | 1 cut(s) | 884 |
| AfaI | GTAC | 1 cut(s) | 481 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 893 |
| AgsI | TTSAA | 4 cut(s) | 227, 245, 405, 992 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 410, 442 |
| AluBI | AGCT | 5 cut(s) | 37, 110, 455, 473, 864 |
| AluI | AGCT | 5 cut(s) | 37, 110, 455, 473, 864 |
| Alw21I | GWGCWC | 2 cut(s) | 380, 624 |
| Alw26I | GTCTC | 1 cut(s) | 549 |
| Alw44I | GTGCAC | 1 cut(s) | 620 |
| AlwI | GGATC | 2 cut(s) | 256, 794 |
| Aor13HI | TCCGGA | 1 cut(s) | 112 |
| AoxI | GGCC | 3 cut(s) | 265, 702, 723 |
| ApaLI | GTGCAC | 1 cut(s) | 620 |
| ApeKI | GCWGC | 1 cut(s) | 107 |
| ApoI | RAATTY | 2 cut(s) | 433, 992 |
| AseI | ATTAAT | 1 cut(s) | 564 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 9 |
| AspLEI | GCGC | 1 cut(s) | 886 |
| AspS9I | GGNCC | 3 cut(s) | 50, 79, 723 |
| AsuHPI | GGTGA | 1 cut(s) | 754 |
| AvaII | GGWCC | 2 cut(s) | 50, 79 |
| BaeGI | GKGCMC | 1 cut(s) | 624 |
| BanI | GGYRCC | 1 cut(s) | 883 |
| Bbv12I | GWGCWC | 2 cut(s) | 380, 624 |
| BbvI | GCAGC | 1 cut(s) | 119 |
| BccI | CCATC | 1 cut(s) | 749 |
| BceAI | ACGGC | 2 cut(s) | 689, 897 |
| BclI | TGATCA | 2 cut(s) | 382, 946 |
| BcoDI | GTCTC | 1 cut(s) | 549 |
| BfaI | CTAG | 2 cut(s) | 413, 843 |
| BfoI | RGCGCY | 1 cut(s) | 887 |
| BisI | GCNGC | 1 cut(s) | 108 |
| BlpI | GCTNAGC | 1 cut(s) | 825 |
| BlsI | GCNGC | 1 cut(s) | 109 |
| BmcAI | AGTACT | 1 cut(s) | 481 |
| Bme18I | GGWCC | 2 cut(s) | 50, 79 |
| BmgT120I | GGNCC | 3 cut(s) | 50, 79, 723 |
| BmiI | GGNNCC | 2 cut(s) | 101, 885 |
| BmsI | GCATC | 2 cut(s) | 316, 824 |
| Bpu10I | CCTNAGC | 1 cut(s) | 527 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 825 |
| BsaHI | GRCGYC | 1 cut(s) | 884 |
| BsaWI | WCCGGW | 1 cut(s) | 112 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 893 |
| Bse3DI | GCAATG | 1 cut(s) | 546 |
| BseAI | TCCGGA | 1 cut(s) | 112 |
| BseGI | GGATG | 2 cut(s) | 370, 988 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 893 |
| BseMI | GCAATG | 1 cut(s) | 546 |
| BseSI | GKGCMC | 1 cut(s) | 624 |
| BseXI | GCAGC | 1 cut(s) | 119 |
| BsgI | GTGCAG | 2 cut(s) | 126, 945 |
| BshFI | GGCC | 3 cut(s) | 267, 704, 725 |
| BshNI | GGYRCC | 1 cut(s) | 883 |
| BsiHKAI | GWGCWC | 2 cut(s) | 380, 624 |
| BsiSI | CCGG | 1 cut(s) | 113 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 893 |
| BsmAI | GTCTC | 1 cut(s) | 549 |
| BsnI | GGCC | 3 cut(s) | 267, 704, 725 |
| Bsp1286I | GDGCHC | 2 cut(s) | 380, 624 |
| Bsp13I | TCCGGA | 1 cut(s) | 112 |
| Bsp143I | GATC | 6 cut(s) | 248, 269, 382, 799, 904, 946 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 825 |
| BspANI | GGCC | 3 cut(s) | 267, 704, 725 |
| BspEI | TCCGGA | 1 cut(s) | 112 |
| BspHI | TCATGA | 1 cut(s) | 778 |
| BspLI | GGNNCC | 2 cut(s) | 101, 885 |
| BspPI | GGATC | 2 cut(s) | 256, 794 |
| BspT107I | GGYRCC | 1 cut(s) | 883 |
| BsrDI | GCAATG | 1 cut(s) | 546 |
| BssMI | GATC | 6 cut(s) | 248, 269, 382, 799, 904, 946 |
| BssNI | GRCGYC | 1 cut(s) | 884 |
| Bst4CI | ACNGT | 5 cut(s) | 104, 279, 329, 575, 943 |
| BstACI | GRCGYC | 1 cut(s) | 884 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 821 |
| BstC8I | GCNNGC | 1 cut(s) | 453 |
| BstDEI | CTNAG | 6 cut(s) | 139, 456, 527, 585, 766, 825 |
| BstF5I | GGATG | 2 cut(s) | 370, 988 |
| BstH2I | RGCGCY | 1 cut(s) | 887 |
| BstHHI | GCGC | 1 cut(s) | 886 |
| BstKTI | GATC | 6 cut(s) | 251, 272, 385, 802, 907, 949 |
| BstMAI | GTCTC | 1 cut(s) | 549 |
| BstMBI | GATC | 6 cut(s) | 248, 269, 382, 799, 904, 946 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 821 |
| BstNSI | RCATGY | 1 cut(s) | 824 |
| BstSLI | GKGCMC | 1 cut(s) | 624 |
| BstV1I | GCAGC | 1 cut(s) | 119 |
| BsuRI | GGCC | 3 cut(s) | 267, 704, 725 |
| BtsCI | GGATG | 2 cut(s) | 370, 988 |
| Cac8I | GCNNGC | 1 cut(s) | 453 |
| CciI | TCATGA | 1 cut(s) | 778 |
| CfoI | GCGC | 1 cut(s) | 886 |
| Cfr13I | GGNCC | 3 cut(s) | 50, 79, 723 |
| Csp6I | GTAC | 1 cut(s) | 480 |
| CviAII | CATG | 5 cut(s) | 73, 175, 730, 779, 821 |
| CviQI | GTAC | 1 cut(s) | 480 |
| DdeI | CTNAG | 6 cut(s) | 139, 456, 527, 585, 766, 825 |
| DinI | GGCGCC | 1 cut(s) | 885 |
| DpnI | GATC | 6 cut(s) | 250, 271, 384, 801, 906, 948 |
| DpnII | GATC | 6 cut(s) | 248, 269, 382, 799, 904, 946 |
| EaeI | YGGCCR | 1 cut(s) | 702 |
| Eco47I | GGWCC | 2 cut(s) | 50, 79 |
| EcoO109I | RGGNCCY | 1 cut(s) | 79 |
| EcoRI | GAATTC | 1 cut(s) | 992 |
| EgeI | GGCGCC | 1 cut(s) | 885 |
| EheI | GGCGCC | 1 cut(s) | 885 |
| FaeI | CATG | 5 cut(s) | 76, 178, 733, 782, 824 |
| FatI | CATG | 5 cut(s) | 72, 174, 729, 778, 820 |
| FbaI | TGATCA | 2 cut(s) | 382, 946 |
| Fnu4HI | GCNGC | 1 cut(s) | 108 |
| FokI | GGATG | 2 cut(s) | 377, 995 |
| Fsp4HI | GCNGC | 1 cut(s) | 108 |
| FspBI | CTAG | 2 cut(s) | 413, 843 |
| GlaI | GCGC | 1 cut(s) | 885 |
| GluI | GCNGC | 1 cut(s) | 108 |
| HaeII | RGCGCY | 1 cut(s) | 887 |
| HaeIII | GGCC | 3 cut(s) | 267, 704, 725 |
| HapII | CCGG | 1 cut(s) | 113 |
| HhaI | GCGC | 1 cut(s) | 886 |
| Hin1I | GRCGYC | 1 cut(s) | 884 |
| Hin1II | CATG | 5 cut(s) | 76, 178, 733, 782, 824 |
| Hin6I | GCGC | 1 cut(s) | 884 |
| HinP1I | GCGC | 1 cut(s) | 884 |
| HincII | GTYRAC | 3 cut(s) | 282, 772, 879 |
| HindII | GTYRAC | 3 cut(s) | 282, 772, 879 |
| HinfI | GANTC | 5 cut(s) | 41, 401, 491, 759, 953 |
| HpaI | GTTAAC | 1 cut(s) | 772 |
| HpaII | CCGG | 1 cut(s) | 113 |
| HphI | GGTGA | 1 cut(s) | 754 |
| Hpy166II | GTNNAC | 5 cut(s) | 203, 282, 622, 772, 879 |
| Hpy188I | TCNGA | 3 cut(s) | 382, 499, 998 |
| Hpy188III | TCNNGA | 7 cut(s) | 14, 48, 113, 332, 779, 908, 950 |
| Hpy8I | GTNNAC | 5 cut(s) | 203, 282, 622, 772, 879 |
| HpyAV | CCTTC | 5 cut(s) | 70, 110, 239, 776, 785 |
| HpyCH4III | ACNGT | 5 cut(s) | 104, 279, 329, 575, 943 |
| HpyCH4IV | ACGT | 1 cut(s) | 388 |
| HpyCH4V | TGCA | 9 cut(s) | 107, 128, 295, 307, 424, 451, 539, 622, 962 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 821 |
| HpyF3I | CTNAG | 6 cut(s) | 139, 456, 527, 585, 766, 825 |
| HpySE526I | ACGT | 1 cut(s) | 388 |
| Hsp92I | GRCGYC | 1 cut(s) | 884 |
| Hsp92II | CATG | 5 cut(s) | 76, 178, 733, 782, 824 |
| HspAI | GCGC | 1 cut(s) | 884 |
| KasI | GGCGCC | 1 cut(s) | 883 |
| Kpn2I | TCCGGA | 1 cut(s) | 112 |
| Ksp22I | TGATCA | 2 cut(s) | 382, 946 |
| KspAI | GTTAAC | 1 cut(s) | 772 |
| Kzo9I | GATC | 6 cut(s) | 248, 269, 382, 799, 904, 946 |
| LmnI | GCTCC | 1 cut(s) | 115 |
| LpnPI | CCDG | 8 cut(s) | 23, 27, 33, 126, 537, 723, 850, 874 |
| Lsp1109I | GCAGC | 1 cut(s) | 119 |
| LweI | GCATC | 2 cut(s) | 316, 824 |
| MaeI | CTAG | 2 cut(s) | 413, 843 |
| MaeII | ACGT | 1 cut(s) | 388 |
| MalI | GATC | 6 cut(s) | 250, 271, 384, 801, 906, 948 |
| MboI | GATC | 6 cut(s) | 248, 269, 382, 799, 904, 946 |
| MboII | GAAGA | 5 cut(s) | 17, 29, 36, 41, 757 |
| MhlI | GDGCHC | 2 cut(s) | 380, 624 |
| MluCI | AATT | 6 cut(s) | 240, 396, 433, 646, 914, 992 |
| Mly113I | GGCGCC | 1 cut(s) | 884 |
| MlyI | GAGTC | 2 cut(s) | 500, 962 |
| MnlI | CCTC | 4 cut(s) | 346, 583, 887, 973 |
| MroI | TCCGGA | 1 cut(s) | 112 |
| MroXI | GAANNNNTTC | 1 cut(s) | 9 |
| MseI | TTAA | 9 cut(s) | 84, 324, 371, 462, 468, 519, 564, 771, 788 |
| MslI | CAYNNNNRTG | 2 cut(s) | 312, 363 |
| MspA1I | CMGCKG | 1 cut(s) | 864 |
| MspI | CCGG | 1 cut(s) | 113 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 821 |
| NarI | GGCGCC | 1 cut(s) | 884 |
| NdeII | GATC | 6 cut(s) | 248, 269, 382, 799, 904, 946 |
| NlaIII | CATG | 5 cut(s) | 76, 178, 733, 782, 824 |
| NlaIV | GGNNCC | 2 cut(s) | 101, 885 |
| NspI | RCATGY | 1 cut(s) | 824 |
| PagI | TCATGA | 1 cut(s) | 778 |
| PdmI | GAANNNNTTC | 1 cut(s) | 9 |
| PfeI | GAWTC | 3 cut(s) | 41, 401, 759 |
| PkrI | GCNGC | 1 cut(s) | 109 |
| PleI | GAGTC | 2 cut(s) | 499, 961 |
| PluTI | GGCGCC | 1 cut(s) | 887 |
| PpsI | GAGTC | 2 cut(s) | 499, 961 |
| PpuMI | RGGWCCY | 1 cut(s) | 79 |
| PshBI | ATTAAT | 1 cut(s) | 564 |
| Psp1406I | AACGTT | 1 cut(s) | 388 |
| Psp5II | RGGWCCY | 1 cut(s) | 79 |
| PspN4I | GGNNCC | 2 cut(s) | 101, 885 |
| PspPI | GGNCC | 3 cut(s) | 50, 79, 723 |
| PspPPI | RGGWCCY | 1 cut(s) | 79 |
| PvuII | CAGCTG | 1 cut(s) | 864 |
| RsaI | GTAC | 1 cut(s) | 481 |
| RsaNI | GTAC | 1 cut(s) | 480 |
| RseI | CAYNNNNRTG | 2 cut(s) | 312, 363 |
| SaqAI | TTAA | 9 cut(s) | 84, 324, 371, 462, 468, 519, 564, 771, 788 |
| SatI | GCNGC | 1 cut(s) | 108 |
| Sau3AI | GATC | 6 cut(s) | 248, 269, 382, 799, 904, 946 |
| Sau96I | GGNCC | 3 cut(s) | 50, 79, 723 |
| ScaI | AGTACT | 1 cut(s) | 481 |
| SchI | GAGTC | 2 cut(s) | 500, 962 |
| SduI | GDGCHC | 2 cut(s) | 380, 624 |
| SfaNI | GCATC | 2 cut(s) | 316, 824 |
| SfoI | GGCGCC | 1 cut(s) | 885 |
| SinI | GGWCC | 2 cut(s) | 50, 79 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 312, 363 |
| Sse9I | AATT | 6 cut(s) | 240, 396, 433, 646, 914, 992 |
| SspDI | GGCGCC | 1 cut(s) | 883 |
| SspMI | CTAG | 2 cut(s) | 413, 843 |
| TaaI | ACNGT | 5 cut(s) | 104, 279, 329, 575, 943 |
| TaiI | ACGT | 1 cut(s) | 391 |
| TaqI | TCGA | 3 cut(s) | 251, 489, 909 |
| TasI | AATT | 6 cut(s) | 240, 396, 433, 646, 914, 992 |
| TatI | WGTACW | 1 cut(s) | 479 |
| TfiI | GAWTC | 3 cut(s) | 41, 401, 759 |
| Tru1I | TTAA | 9 cut(s) | 84, 324, 371, 462, 468, 519, 564, 771, 788 |
| Tru9I | TTAA | 9 cut(s) | 84, 324, 371, 462, 468, 519, 564, 771, 788 |
| TseI | GCWGC | 1 cut(s) | 107 |
| TspDTI | ATGAA | 8 cut(s) | 89, 191, 303, 347, 569, 767, 795, 867 |
| TspGWI | ACGGA | 2 cut(s) | 226, 686 |
| VneI | GTGCAC | 1 cut(s) | 620 |
| VpaK11BI | GGWCC | 2 cut(s) | 50, 79 |
| VspI | ATTAAT | 1 cut(s) | 564 |
| XapI | RAATTY | 2 cut(s) | 433, 992 |
| XceI | RCATGY | 1 cut(s) | 824 |
| XmnI | GAANNNNTTC | 1 cut(s) | 9 |
| XspI | CTAG | 2 cut(s) | 413, 843 |
| ZrmI | AGTACT | 1 cut(s) | 481 |