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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 878 |
| AciI | CCGC | 2 cut(s) | 379, 404 |
| AclWI | GGATC | 4 cut(s) | 89, 174, 185, 351 |
| AcsI | RAATTY | 2 cut(s) | 71, 281 |
| AcyI | GRCGYC | 1 cut(s) | 875 |
| AfaI | GTAC | 3 cut(s) | 410, 747, 755 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 683, 771, 911, 971 |
| AflIII | ACRYGT | 1 cut(s) | 680 |
| AgsI | TTSAA | 6 cut(s) | 59, 71, 439, 458, 778, 961 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 33, 65 |
| AluBI | AGCT | 3 cut(s) | 144, 866, 993 |
| AluI | AGCT | 3 cut(s) | 144, 866, 993 |
| AlwI | GGATC | 4 cut(s) | 89, 174, 185, 351 |
| AoxI | GGCC | 2 cut(s) | 902, 998 |
| ApeKI | GCWGC | 1 cut(s) | 993 |
| ApoI | RAATTY | 2 cut(s) | 71, 281 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 63, 732 |
| AspA2I | CCTAGG | 1 cut(s) | 770 |
| AsuC2I | CCSGG | 1 cut(s) | 414 |
| AvrII | CCTAGG | 1 cut(s) | 770 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 392, 425 |
| BbvI | GCAGC | 1 cut(s) | 980 |
| BccI | CCATC | 5 cut(s) | 256, 592, 773, 839, 947 |
| BclI | TGATCA | 1 cut(s) | 253 |
| BcnI | CCSGG | 1 cut(s) | 414 |
| BfaI | CTAG | 4 cut(s) | 17, 771, 906, 924 |
| BglII | AGATCT | 1 cut(s) | 32 |
| BisI | GCNGC | 1 cut(s) | 994 |
| BlnI | CCTAGG | 1 cut(s) | 770 |
| BlsI | GCNGC | 1 cut(s) | 995 |
| BmcAI | AGTACT | 1 cut(s) | 747 |
| Bme1390I | CCNGG | 1 cut(s) | 414 |
| BmiI | GGNNCC | 1 cut(s) | 351 |
| BmrFI | CCNGG | 1 cut(s) | 414 |
| BmsI | GCATC | 2 cut(s) | 556, 859 |
| BpuMI | CCSGG | 1 cut(s) | 414 |
| BsaBI | GATNNNNATC | 1 cut(s) | 252 |
| BsaHI | GRCGYC | 1 cut(s) | 875 |
| BsaJI | CCNNGG | 2 cut(s) | 412, 770 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 683, 771, 911, 971 |
| Bse3DI | GCAATG | 1 cut(s) | 547 |
| Bse8I | GATNNNNATC | 1 cut(s) | 252 |
| BseDI | CCNNGG | 2 cut(s) | 412, 770 |
| BseGI | GGATG | 4 cut(s) | 267, 603, 765, 859 |
| BseJI | GATNNNNATC | 1 cut(s) | 252 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 683, 771, 911, 971 |
| BseMI | GCAATG | 1 cut(s) | 547 |
| BseMII | CTCAG | 1 cut(s) | 946 |
| BseRI | GAGGAG | 1 cut(s) | 404 |
| BseXI | GCAGC | 1 cut(s) | 980 |
| BsgI | GTGCAG | 2 cut(s) | 308, 936 |
| BshFI | GGCC | 2 cut(s) | 904, 1000 |
| BsiSI | CCGG | 1 cut(s) | 414 |
| BslFI | GGGAC | 1 cut(s) | 660 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 683, 771, 911, 971 |
| BsmFI | GGGAC | 1 cut(s) | 660 |
| BsmI | GAATGC | 1 cut(s) | 368 |
| BsnI | GGCC | 2 cut(s) | 904, 1000 |
| Bsp143I | GATC | 7 cut(s) | 32, 94, 105, 166, 190, 253, 343 |
| BspACI | CCGC | 2 cut(s) | 379, 404 |
| BspANI | GGCC | 2 cut(s) | 904, 1000 |
| BspCNI | CTCAG | 1 cut(s) | 945 |
| BspLI | GGNNCC | 1 cut(s) | 351 |
| BspPI | GGATC | 4 cut(s) | 89, 174, 185, 351 |
| BsrDI | GCAATG | 1 cut(s) | 547 |
| BssECI | CCNNGG | 2 cut(s) | 412, 770 |
| BssMI | GATC | 7 cut(s) | 32, 94, 105, 166, 190, 253, 343 |
| BssNI | GRCGYC | 1 cut(s) | 875 |
| BssT1I | CCWWGG | 1 cut(s) | 770 |
| Bst4CI | ACNGT | 1 cut(s) | 635 |
| BstACI | GRCGYC | 1 cut(s) | 875 |
| BstC8I | GCNNGC | 4 cut(s) | 622, 657, 825, 998 |
| BstDEI | CTNAG | 3 cut(s) | 807, 932, 1032 |
| BstF5I | GGATG | 4 cut(s) | 267, 603, 765, 859 |
| BstKTI | GATC | 7 cut(s) | 35, 97, 108, 169, 193, 256, 346 |
| BstMBI | GATC | 7 cut(s) | 32, 94, 105, 166, 190, 253, 343 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 990 |
| BstNSI | RCATGY | 3 cut(s) | 124, 684, 827 |
| BstSCI | CCNGG | 1 cut(s) | 412 |
| BstV1I | GCAGC | 1 cut(s) | 980 |
| BstX2I | RGATCY | 2 cut(s) | 32, 94 |
| BstYI | RGATCY | 2 cut(s) | 32, 94 |
| BsuRI | GGCC | 2 cut(s) | 904, 1000 |
| BtsCI | GGATG | 4 cut(s) | 267, 603, 765, 859 |
| Cac8I | GCNNGC | 4 cut(s) | 622, 657, 825, 998 |
| CseI | GACGC | 1 cut(s) | 845 |
| Csp6I | GTAC | 3 cut(s) | 409, 746, 754 |
| CviAII | CATG | 7 cut(s) | 121, 218, 257, 617, 681, 824, 879 |
| CviJI | RGCY | 7 cut(s) | 16, 144, 227, 866, 904, 993, 1000 |
| CviKI_1 | RGCY | 7 cut(s) | 16, 144, 227, 866, 904, 993, 1000 |
| CviQI | GTAC | 3 cut(s) | 409, 746, 754 |
| DdeI | CTNAG | 3 cut(s) | 807, 932, 1032 |
| DpnI | GATC | 7 cut(s) | 34, 96, 107, 168, 192, 255, 345 |
| DpnII | GATC | 7 cut(s) | 32, 94, 105, 166, 190, 253, 343 |
| Eco130I | CCWWGG | 1 cut(s) | 770 |
| EcoT14I | CCWWGG | 1 cut(s) | 770 |
| ErhI | CCWWGG | 1 cut(s) | 770 |
| FaeI | CATG | 7 cut(s) | 124, 221, 260, 620, 684, 827, 882 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 51, 83, 563, 595 |
| FaqI | GGGAC | 1 cut(s) | 660 |
| FatI | CATG | 7 cut(s) | 120, 217, 256, 616, 680, 823, 878 |
| FauNDI | CATATG | 1 cut(s) | 480 |
| FbaI | TGATCA | 1 cut(s) | 253 |
| Fnu4HI | GCNGC | 1 cut(s) | 994 |
| FokI | GGATG | 4 cut(s) | 274, 610, 752, 846 |
| Fsp4HI | GCNGC | 1 cut(s) | 994 |
| FspBI | CTAG | 4 cut(s) | 17, 771, 906, 924 |
| GluI | GCNGC | 1 cut(s) | 994 |
| HaeIII | GGCC | 2 cut(s) | 904, 1000 |
| HapII | CCGG | 1 cut(s) | 414 |
| HgaI | GACGC | 1 cut(s) | 845 |
| Hin1I | GRCGYC | 1 cut(s) | 875 |
| Hin1II | CATG | 7 cut(s) | 124, 221, 260, 620, 684, 827, 882 |
| HincII | GTYRAC | 2 cut(s) | 181, 948 |
| HindII | GTYRAC | 2 cut(s) | 181, 948 |
| HinfI | GANTC | 2 cut(s) | 272, 613 |
| HpaI | GTTAAC | 1 cut(s) | 181 |
| HpaII | CCGG | 1 cut(s) | 414 |
| Hpy166II | GTNNAC | 3 cut(s) | 181, 948, 974 |
| Hpy188I | TCNGA | 5 cut(s) | 40, 241, 277, 502, 935 |
| Hpy188III | TCNNGA | 3 cut(s) | 68, 347, 533 |
| Hpy8I | GTNNAC | 3 cut(s) | 181, 948, 974 |
| Hpy99I | CGWCG | 1 cut(s) | 877 |
| HpyAV | CCTTC | 2 cut(s) | 530, 694 |
| HpyCH4III | ACNGT | 1 cut(s) | 635 |
| HpyCH4IV | ACGT | 1 cut(s) | 875 |
| HpyCH4V | TGCA | 7 cut(s) | 89, 120, 289, 366, 443, 569, 917 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 990 |
| HpyF3I | CTNAG | 3 cut(s) | 807, 932, 1032 |
| HpySE526I | ACGT | 1 cut(s) | 875 |
| Hsp92I | GRCGYC | 1 cut(s) | 875 |
| Hsp92II | CATG | 7 cut(s) | 124, 221, 260, 620, 684, 827, 882 |
| Ksp22I | TGATCA | 1 cut(s) | 253 |
| KspAI | GTTAAC | 1 cut(s) | 181 |
| Kzo9I | GATC | 7 cut(s) | 32, 94, 105, 166, 190, 253, 343 |
| Lsp1109I | GCAGC | 1 cut(s) | 980 |
| LweI | GCATC | 2 cut(s) | 556, 859 |
| MaeI | CTAG | 4 cut(s) | 17, 771, 906, 924 |
| MaeII | ACGT | 1 cut(s) | 875 |
| MaeIII | GTNAC | 1 cut(s) | 317 |
| MalI | GATC | 7 cut(s) | 34, 96, 107, 168, 192, 255, 345 |
| MboI | GATC | 7 cut(s) | 32, 94, 105, 166, 190, 253, 343 |
| MboII | GAAGA | 5 cut(s) | 27, 71, 521, 622, 740 |
| MflI | RGATCY | 2 cut(s) | 32, 94 |
| MluCI | AATT | 6 cut(s) | 71, 281, 512, 590, 1005, 1021 |
| MnlI | CCTC | 6 cut(s) | 217, 334, 382, 385, 641, 941 |
| MroXI | GAANNNNTTC | 2 cut(s) | 63, 732 |
| MseI | TTAA | 6 cut(s) | 162, 180, 465, 584, 815, 851 |
| MslI | CAYNNNNRTG | 1 cut(s) | 483 |
| MspA1I | CMGCKG | 3 cut(s) | 379, 406, 866 |
| MspI | CCGG | 1 cut(s) | 414 |
| MspR9I | CCNGG | 1 cut(s) | 414 |
| Mva1269I | GAATGC | 1 cut(s) | 368 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 990 |
| NciI | CCSGG | 1 cut(s) | 414 |
| NdeI | CATATG | 1 cut(s) | 480 |
| NdeII | GATC | 7 cut(s) | 32, 94, 105, 166, 190, 253, 343 |
| NlaIII | CATG | 7 cut(s) | 124, 221, 260, 620, 684, 827, 882 |
| NlaIV | GGNNCC | 1 cut(s) | 351 |
| NmuCI | GTSAC | 1 cut(s) | 317 |
| NspI | RCATGY | 3 cut(s) | 124, 684, 827 |
| PaeI | GCATGC | 1 cut(s) | 827 |
| PciI | ACATGT | 1 cut(s) | 680 |
| PctI | GAATGC | 1 cut(s) | 368 |
| PdmI | GAANNNNTTC | 2 cut(s) | 63, 732 |
| PfeI | GAWTC | 2 cut(s) | 272, 613 |
| PkrI | GCNGC | 1 cut(s) | 995 |
| PscI | ACATGT | 1 cut(s) | 680 |
| PspN4I | GGNNCC | 1 cut(s) | 351 |
| PsuI | RGATCY | 2 cut(s) | 32, 94 |
| PvuII | CAGCTG | 1 cut(s) | 866 |
| RsaI | GTAC | 3 cut(s) | 410, 747, 755 |
| RsaNI | GTAC | 3 cut(s) | 409, 746, 754 |
| RseI | CAYNNNNRTG | 1 cut(s) | 483 |
| SaqAI | TTAA | 6 cut(s) | 162, 180, 465, 584, 815, 851 |
| SatI | GCNGC | 1 cut(s) | 994 |
| Sau3AI | GATC | 7 cut(s) | 32, 94, 105, 166, 190, 253, 343 |
| ScaI | AGTACT | 1 cut(s) | 747 |
| ScrFI | CCNGG | 1 cut(s) | 414 |
| SfaNI | GCATC | 2 cut(s) | 556, 859 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 483 |
| SphI | GCATGC | 1 cut(s) | 827 |
| Sse9I | AATT | 6 cut(s) | 71, 281, 512, 590, 1005, 1021 |
| SsiI | CCGC | 2 cut(s) | 379, 404 |
| SspMI | CTAG | 4 cut(s) | 17, 771, 906, 924 |
| StyD4I | CCNGG | 1 cut(s) | 412 |
| StyI | CCWWGG | 1 cut(s) | 770 |
| TaaI | ACNGT | 1 cut(s) | 635 |
| TaiI | ACGT | 1 cut(s) | 878 |
| TasI | AATT | 6 cut(s) | 71, 281, 512, 590, 1005, 1021 |
| TatI | WGTACW | 1 cut(s) | 745 |
| TfiI | GAWTC | 2 cut(s) | 272, 613 |
| Tru1I | TTAA | 6 cut(s) | 162, 180, 465, 584, 815, 851 |
| Tru9I | TTAA | 6 cut(s) | 162, 180, 465, 584, 815, 851 |
| TseFI | GTSAC | 1 cut(s) | 317 |
| TseI | GCWGC | 1 cut(s) | 993 |
| Tsp45I | GTSAC | 1 cut(s) | 317 |
| TspDTI | ATGAA | 5 cut(s) | 294, 326, 375, 605, 909 |
| TspGWI | ACGGA | 1 cut(s) | 183 |
| XapI | RAATTY | 2 cut(s) | 71, 281 |
| XceI | RCATGY | 3 cut(s) | 124, 684, 827 |
| XmaJI | CCTAGG | 1 cut(s) | 770 |
| XmnI | GAANNNNTTC | 2 cut(s) | 63, 732 |
| XspI | CTAG | 4 cut(s) | 17, 771, 906, 924 |
| ZraI | GACGTC | 1 cut(s) | 876 |
| ZrmI | AGTACT | 1 cut(s) | 747 |