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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 69 |
| AccI | GTMKAC | 1 cut(s) | 487 |
| AciI | CCGC | 1 cut(s) | 342 |
| AclWI | GGATC | 1 cut(s) | 295 |
| AfaI | GTAC | 3 cut(s) | 33, 368, 383 |
| AgeI | ACCGGT | 1 cut(s) | 145 |
| AgsI | TTSAA | 4 cut(s) | 184, 216, 397, 458 |
| AlwI | GGATC | 1 cut(s) | 295 |
| AsiGI | ACCGGT | 1 cut(s) | 145 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 392 |
| AspS9I | GGNCC | 1 cut(s) | 344 |
| AsuHPI | GGTGA | 1 cut(s) | 418 |
| AvaII | GGWCC | 1 cut(s) | 344 |
| AxyI | CCTNAGG | 1 cut(s) | 426 |
| BccI | CCATC | 2 cut(s) | 354, 396 |
| BfaI | CTAG | 1 cut(s) | 242 |
| Bme18I | GGWCC | 1 cut(s) | 344 |
| BmgT120I | GGNCC | 1 cut(s) | 344 |
| BmsI | GCATC | 1 cut(s) | 490 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 461, 493 |
| BpmI | CTGGAG | 1 cut(s) | 242 |
| BpuEI | CTTGAG | 1 cut(s) | 284 |
| BsaWI | WCCGGW | 2 cut(s) | 10, 145 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 96, 126 |
| Bse118I | RCCGGY | 2 cut(s) | 68, 145 |
| Bse1I | ACTGG | 1 cut(s) | 225 |
| Bse21I | CCTNAGG | 1 cut(s) | 426 |
| Bse3DI | GCAATG | 1 cut(s) | 435 |
| BseGI | GGATG | 3 cut(s) | 23, 369, 407 |
| BseMI | GCAATG | 1 cut(s) | 435 |
| BseMII | CTCAG | 3 cut(s) | 417, 432, 492 |
| BseNI | ACTGG | 1 cut(s) | 225 |
| BshTI | ACCGGT | 1 cut(s) | 145 |
| BsiSI | CCGG | 3 cut(s) | 11, 69, 146 |
| Bsp143I | GATC | 1 cut(s) | 300 |
| BspACI | CCGC | 1 cut(s) | 342 |
| BspCNI | CTCAG | 3 cut(s) | 418, 433, 491 |
| BspPI | GGATC | 1 cut(s) | 295 |
| BsrDI | GCAATG | 1 cut(s) | 435 |
| BsrFI | RCCGGY | 2 cut(s) | 68, 145 |
| BsrI | ACTGG | 1 cut(s) | 225 |
| BssAI | RCCGGY | 2 cut(s) | 68, 145 |
| BssMI | GATC | 1 cut(s) | 300 |
| BssNAI | GTATAC | 1 cut(s) | 488 |
| Bst1107I | GTATAC | 1 cut(s) | 488 |
| Bst4CI | ACNGT | 4 cut(s) | 7, 253, 313, 420 |
| Bst6I | CTCTTC | 1 cut(s) | 453 |
| BstC8I | GCNNGC | 2 cut(s) | 234, 260 |
| BstDEI | CTNAG | 3 cut(s) | 426, 441, 478 |
| BstF5I | GGATG | 3 cut(s) | 23, 369, 407 |
| BstKTI | GATC | 1 cut(s) | 303 |
| BstMBI | GATC | 1 cut(s) | 300 |
| BstZ17I | GTATAC | 1 cut(s) | 488 |
| Bsu36I | CCTNAGG | 1 cut(s) | 426 |
| BtsCI | GGATG | 3 cut(s) | 23, 369, 407 |
| Cac8I | GCNNGC | 2 cut(s) | 234, 260 |
| Cfr10I | RCCGGY | 2 cut(s) | 68, 145 |
| Cfr13I | GGNCC | 1 cut(s) | 344 |
| CpoI | CGGWCCG | 1 cut(s) | 344 |
| Csp6I | GTAC | 3 cut(s) | 32, 367, 382 |
| CspAI | ACCGGT | 1 cut(s) | 145 |
| CspI | CGGWCCG | 1 cut(s) | 344 |
| CviAII | CATG | 2 cut(s) | 83, 385 |
| CviQI | GTAC | 3 cut(s) | 32, 367, 382 |
| DdeI | CTNAG | 3 cut(s) | 426, 441, 478 |
| DpnI | GATC | 1 cut(s) | 302 |
| DpnII | GATC | 1 cut(s) | 300 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 69 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 69 |
| Eam1104I | CTCTTC | 1 cut(s) | 453 |
| EarI | CTCTTC | 1 cut(s) | 453 |
| Eco47I | GGWCC | 1 cut(s) | 344 |
| Eco81I | CCTNAGG | 1 cut(s) | 426 |
| FaeI | CATG | 2 cut(s) | 86, 388 |
| FaiI | YATR | 9 cut(s) | 84, 98, 156, 193, 296, 340, 386, 450, 488 |
| FatI | CATG | 2 cut(s) | 82, 384 |
| FblI | GTMKAC | 1 cut(s) | 487 |
| FokI | GGATG | 3 cut(s) | 10, 376, 414 |
| FspBI | CTAG | 1 cut(s) | 242 |
| GsuI | CTGGAG | 1 cut(s) | 242 |
| HapII | CCGG | 3 cut(s) | 11, 69, 146 |
| Hin1II | CATG | 2 cut(s) | 86, 388 |
| HinfI | GANTC | 2 cut(s) | 63, 412 |
| HpaII | CCGG | 3 cut(s) | 11, 69, 146 |
| HphI | GGTGA | 1 cut(s) | 418 |
| Hpy166II | GTNNAC | 1 cut(s) | 488 |
| Hpy188I | TCNGA | 2 cut(s) | 348, 481 |
| Hpy188III | TCNNGA | 1 cut(s) | 425 |
| Hpy8I | GTNNAC | 1 cut(s) | 488 |
| HpyAV | CCTTC | 1 cut(s) | 382 |
| HpyCH4III | ACNGT | 4 cut(s) | 7, 253, 313, 420 |
| HpyCH4IV | ACGT | 2 cut(s) | 127, 484 |
| HpyCH4V | TGCA | 5 cut(s) | 103, 122, 158, 232, 435 |
| HpyF3I | CTNAG | 3 cut(s) | 426, 441, 478 |
| HpySE526I | ACGT | 2 cut(s) | 127, 484 |
| Hsp92II | CATG | 2 cut(s) | 86, 388 |
| Kzo9I | GATC | 1 cut(s) | 300 |
| LmnI | GCTCC | 1 cut(s) | 223 |
| LpnPI | CCDG | 7 cut(s) | 24, 26, 82, 159, 206, 272, 438 |
| LweI | GCATC | 1 cut(s) | 490 |
| MaeI | CTAG | 1 cut(s) | 242 |
| MaeII | ACGT | 2 cut(s) | 127, 484 |
| MalI | GATC | 1 cut(s) | 302 |
| MboI | GATC | 1 cut(s) | 300 |
| MboII | GAAGA | 3 cut(s) | 101, 172, 470 |
| MfeI | CAATTG | 1 cut(s) | 465 |
| MluCI | AATT | 2 cut(s) | 159, 465 |
| MlyI | GAGTC | 1 cut(s) | 57 |
| MnlI | CCTC | 6 cut(s) | 46, 292, 372, 402, 421, 454 |
| MroXI | GAANNNNTTC | 1 cut(s) | 392 |
| MseI | TTAA | 2 cut(s) | 59, 75 |
| MslI | CAYNNNNRTG | 2 cut(s) | 98, 389 |
| MspI | CCGG | 3 cut(s) | 11, 69, 146 |
| MunI | CAATTG | 1 cut(s) | 465 |
| NdeII | GATC | 1 cut(s) | 300 |
| NlaIII | CATG | 2 cut(s) | 86, 388 |
| PdmI | GAANNNNTTC | 1 cut(s) | 392 |
| PfeI | GAWTC | 1 cut(s) | 412 |
| PinAI | ACCGGT | 1 cut(s) | 145 |
| PleI | GAGTC | 1 cut(s) | 57 |
| PpsI | GAGTC | 1 cut(s) | 57 |
| PspPI | GGNCC | 1 cut(s) | 344 |
| RsaI | GTAC | 3 cut(s) | 33, 368, 383 |
| RsaNI | GTAC | 3 cut(s) | 32, 367, 382 |
| RseI | CAYNNNNRTG | 2 cut(s) | 98, 389 |
| Rsr2I | CGGWCCG | 1 cut(s) | 344 |
| RsrII | CGGWCCG | 1 cut(s) | 344 |
| SaqAI | TTAA | 2 cut(s) | 59, 75 |
| Sau3AI | GATC | 1 cut(s) | 300 |
| Sau96I | GGNCC | 1 cut(s) | 344 |
| SchI | GAGTC | 1 cut(s) | 57 |
| SetI | ASST | 7 cut(s) | 20, 130, 243, 309, 383, 393, 487 |
| SfaNI | GCATC | 1 cut(s) | 490 |
| SinI | GGWCC | 1 cut(s) | 344 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 98, 389 |
| SmlI | CTYRAG | 1 cut(s) | 263 |
| SmoI | CTYRAG | 1 cut(s) | 263 |
| Sse9I | AATT | 2 cut(s) | 159, 465 |
| SsiI | CCGC | 1 cut(s) | 342 |
| SspMI | CTAG | 1 cut(s) | 242 |
| TaaI | ACNGT | 4 cut(s) | 7, 253, 313, 420 |
| TaiI | ACGT | 2 cut(s) | 130, 487 |
| TaqI | TCGA | 1 cut(s) | 415 |
| TasI | AATT | 2 cut(s) | 159, 465 |
| TfiI | GAWTC | 1 cut(s) | 412 |
| Tru1I | TTAA | 2 cut(s) | 59, 75 |
| Tru9I | TTAA | 2 cut(s) | 59, 75 |
| TspDTI | ATGAA | 3 cut(s) | 12, 305, 401 |
| VpaK11BI | GGWCC | 1 cut(s) | 344 |
| XmiI | GTMKAC | 1 cut(s) | 487 |
| XmnI | GAANNNNTTC | 1 cut(s) | 392 |
| XspI | CTAG | 1 cut(s) | 242 |