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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 134 |
| AcsI | RAATTY | 3 cut(s) | 65, 546, 828 |
| AdeI | CACNNNGTG | 1 cut(s) | 640 |
| AfaI | GTAC | 1 cut(s) | 621 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 866 |
| AgeI | ACCGGT | 1 cut(s) | 463 |
| AgsI | TTSAA | 8 cut(s) | 50, 56, 107, 366, 551, 653, 695, 904 |
| AjnI | CCWGG | 1 cut(s) | 151 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 826, 858 |
| AluBI | AGCT | 3 cut(s) | 382, 538, 782 |
| AluI | AGCT | 3 cut(s) | 382, 538, 782 |
| Alw26I | GTCTC | 2 cut(s) | 402, 560 |
| AoxI | GGCC | 1 cut(s) | 177 |
| ApeKI | GCWGC | 1 cut(s) | 513 |
| ApoI | RAATTY | 3 cut(s) | 65, 546, 828 |
| AsiGI | ACCGGT | 1 cut(s) | 463 |
| AspS9I | GGNCC | 4 cut(s) | 178, 236, 325, 662 |
| AsuHPI | GGTGA | 1 cut(s) | 626 |
| AsuII | TTCGAA | 1 cut(s) | 344 |
| AvaII | GGWCC | 3 cut(s) | 236, 325, 662 |
| AxyI | CCTNAGG | 1 cut(s) | 744 |
| BanI | GGYRCC | 1 cut(s) | 134 |
| BbvI | GCAGC | 1 cut(s) | 525 |
| BccI | CCATC | 4 cut(s) | 47, 161, 193, 227 |
| BciT130I | CCWGG | 1 cut(s) | 153 |
| BciVI | GTATCC | 1 cut(s) | 696 |
| BcoDI | GTCTC | 2 cut(s) | 402, 560 |
| BfaI | CTAG | 2 cut(s) | 89, 638 |
| BfuI | GTATCC | 1 cut(s) | 696 |
| BglII | AGATCT | 1 cut(s) | 187 |
| BisI | GCNGC | 1 cut(s) | 514 |
| BlsI | GCNGC | 1 cut(s) | 515 |
| Bme1390I | CCNGG | 1 cut(s) | 153 |
| Bme18I | GGWCC | 3 cut(s) | 236, 325, 662 |
| BmgT120I | GGNCC | 4 cut(s) | 178, 236, 325, 662 |
| BmiI | GGNNCC | 2 cut(s) | 136, 327 |
| BmrFI | CCNGG | 1 cut(s) | 153 |
| BmsI | GCATC | 2 cut(s) | 87, 539 |
| Bpu14I | TTCGAA | 1 cut(s) | 344 |
| BpuEI | CTTGAG | 1 cut(s) | 602 |
| BsaWI | WCCGGW | 2 cut(s) | 73, 463 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 866 |
| Bse118I | RCCGGY | 1 cut(s) | 463 |
| Bse1I | ACTGG | 2 cut(s) | 65, 665 |
| Bse21I | CCTNAGG | 1 cut(s) | 744 |
| Bse3DI | GCAATG | 1 cut(s) | 768 |
| BseBI | CCWGG | 1 cut(s) | 153 |
| BseGI | GGATG | 4 cut(s) | 12, 376, 396, 687 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 866 |
| BseMI | GCAATG | 1 cut(s) | 768 |
| BseMII | CTCAG | 1 cut(s) | 735 |
| BseNI | ACTGG | 2 cut(s) | 65, 665 |
| BseXI | GCAGC | 1 cut(s) | 525 |
| BshFI | GGCC | 1 cut(s) | 179 |
| BshNI | GGYRCC | 1 cut(s) | 134 |
| BshTI | ACCGGT | 1 cut(s) | 463 |
| BsiSI | CCGG | 2 cut(s) | 74, 464 |
| BslFI | GGGAC | 1 cut(s) | 311 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 866 |
| BsmAI | GTCTC | 2 cut(s) | 402, 560 |
| BsmFI | GGGAC | 1 cut(s) | 311 |
| BsnI | GGCC | 1 cut(s) | 179 |
| Bsp119I | TTCGAA | 1 cut(s) | 344 |
| Bsp143I | GATC | 2 cut(s) | 187, 373 |
| BspANI | GGCC | 1 cut(s) | 179 |
| BspCNI | CTCAG | 1 cut(s) | 736 |
| BspHI | TCATGA | 1 cut(s) | 400 |
| BspLI | GGNNCC | 2 cut(s) | 136, 327 |
| BspT104I | TTCGAA | 1 cut(s) | 344 |
| BspT107I | GGYRCC | 1 cut(s) | 134 |
| BsrDI | GCAATG | 1 cut(s) | 768 |
| BsrFI | RCCGGY | 1 cut(s) | 463 |
| BsrI | ACTGG | 2 cut(s) | 65, 665 |
| BssAI | RCCGGY | 1 cut(s) | 463 |
| BssMI | GATC | 2 cut(s) | 187, 373 |
| Bst2UI | CCWGG | 1 cut(s) | 153 |
| Bst4CI | ACNGT | 2 cut(s) | 341, 631 |
| Bst6I | CTCTTC | 1 cut(s) | 933 |
| BstBI | TTCGAA | 1 cut(s) | 344 |
| BstC8I | GCNNGC | 3 cut(s) | 254, 578, 857 |
| BstDEI | CTNAG | 5 cut(s) | 280, 383, 534, 744, 846 |
| BstF5I | GGATG | 4 cut(s) | 12, 376, 396, 687 |
| BstKTI | GATC | 2 cut(s) | 190, 376 |
| BstMAI | GTCTC | 2 cut(s) | 402, 560 |
| BstMBI | GATC | 2 cut(s) | 187, 373 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 446, 779 |
| BstNI | CCWGG | 1 cut(s) | 153 |
| BstSCI | CCNGG | 1 cut(s) | 151 |
| BstV1I | GCAGC | 1 cut(s) | 525 |
| BstX2I | RGATCY | 1 cut(s) | 187 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 824 |
| BstYI | RGATCY | 1 cut(s) | 187 |
| Bsu36I | CCTNAGG | 1 cut(s) | 744 |
| BsuI | GTATCC | 1 cut(s) | 696 |
| BsuRI | GGCC | 1 cut(s) | 179 |
| BtsCI | GGATG | 4 cut(s) | 12, 376, 396, 687 |
| BtsI | GCAGTG | 1 cut(s) | 82 |
| BtsIMutI | CAGTG | 1 cut(s) | 82 |
| Cac8I | GCNNGC | 3 cut(s) | 254, 578, 857 |
| CciI | TCATGA | 1 cut(s) | 400 |
| Cfr10I | RCCGGY | 1 cut(s) | 463 |
| Cfr13I | GGNCC | 4 cut(s) | 178, 236, 325, 662 |
| Csp6I | GTAC | 1 cut(s) | 620 |
| CspAI | ACCGGT | 1 cut(s) | 463 |
| CviAII | CATG | 4 cut(s) | 172, 401, 410, 703 |
| CviJI | RGCY | 8 cut(s) | 179, 382, 449, 538, 782, 797, 859, 950 |
| CviKI_1 | RGCY | 8 cut(s) | 179, 382, 449, 538, 782, 797, 859, 950 |
| CviQI | GTAC | 1 cut(s) | 620 |
| DdeI | CTNAG | 5 cut(s) | 280, 383, 534, 744, 846 |
| DpnI | GATC | 2 cut(s) | 189, 375 |
| DpnII | GATC | 2 cut(s) | 187, 373 |
| DraIII | CACNNNGTG | 1 cut(s) | 640 |
| Eam1104I | CTCTTC | 1 cut(s) | 933 |
| EarI | CTCTTC | 1 cut(s) | 933 |
| Eco47I | GGWCC | 3 cut(s) | 236, 325, 662 |
| Eco81I | CCTNAGG | 1 cut(s) | 744 |
| EcoO109I | RGGNCCY | 1 cut(s) | 325 |
| EcoRI | GAATTC | 1 cut(s) | 828 |
| EcoRII | CCWGG | 1 cut(s) | 151 |
| EcoT22I | ATGCAT | 1 cut(s) | 102 |
| FaeI | CATG | 4 cut(s) | 175, 404, 413, 706 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 26, 58, 900, 932 |
| FaqI | GGGAC | 1 cut(s) | 311 |
| FatI | CATG | 4 cut(s) | 171, 400, 409, 702 |
| Fnu4HI | GCNGC | 1 cut(s) | 514 |
| FokI | GGATG | 4 cut(s) | 19, 383, 403, 694 |
| Fsp4HI | GCNGC | 1 cut(s) | 514 |
| FspBI | CTAG | 2 cut(s) | 89, 638 |
| GluI | GCNGC | 1 cut(s) | 514 |
| HaeIII | GGCC | 1 cut(s) | 179 |
| HapII | CCGG | 2 cut(s) | 74, 464 |
| Hin1II | CATG | 4 cut(s) | 175, 404, 413, 706 |
| HindIII | AAGCTT | 2 cut(s) | 380, 536 |
| HinfI | GANTC | 1 cut(s) | 271 |
| HpaII | CCGG | 2 cut(s) | 74, 464 |
| HphI | GGTGA | 1 cut(s) | 626 |
| Hpy166II | GTNNAC | 2 cut(s) | 634, 662 |
| Hpy188I | TCNGA | 4 cut(s) | 240, 276, 814, 947 |
| Hpy188III | TCNNGA | 3 cut(s) | 230, 401, 743 |
| Hpy8I | GTNNAC | 2 cut(s) | 634, 662 |
| HpyAV | CCTTC | 5 cut(s) | 169, 316, 440, 609, 700 |
| HpyCH4III | ACNGT | 2 cut(s) | 341, 631 |
| HpyCH4V | TGCA | 8 cut(s) | 100, 221, 421, 440, 513, 714, 773, 855 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 446, 779 |
| HpyF3I | CTNAG | 5 cut(s) | 280, 383, 534, 744, 846 |
| Hsp92II | CATG | 4 cut(s) | 175, 404, 413, 706 |
| Kzo9I | GATC | 2 cut(s) | 187, 373 |
| Lsp1109I | GCAGC | 1 cut(s) | 525 |
| LweI | GCATC | 2 cut(s) | 87, 539 |
| MaeI | CTAG | 2 cut(s) | 89, 638 |
| MalI | GATC | 2 cut(s) | 189, 375 |
| MboI | GATC | 2 cut(s) | 187, 373 |
| MboII | GAAGA | 7 cut(s) | 40, 43, 62, 301, 598, 788, 950 |
| MflI | RGATCY | 1 cut(s) | 187 |
| MluCI | AATT | 6 cut(s) | 65, 293, 546, 653, 763, 828 |
| MmeI | TCCRAC | 3 cut(s) | 5, 248, 837 |
| MnlI | CCTC | 5 cut(s) | 339, 520, 606, 739, 892 |
| Mph1103I | ATGCAT | 1 cut(s) | 102 |
| MseI | TTAA | 3 cut(s) | 143, 416, 443 |
| MslI | CAYNNNNRTG | 1 cut(s) | 918 |
| MspI | CCGG | 2 cut(s) | 74, 464 |
| MspR9I | CCNGG | 1 cut(s) | 153 |
| MvaI | CCWGG | 1 cut(s) | 153 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 446, 779 |
| NdeII | GATC | 2 cut(s) | 187, 373 |
| NlaIII | CATG | 4 cut(s) | 175, 404, 413, 706 |
| NlaIV | GGNNCC | 2 cut(s) | 136, 327 |
| NsiI | ATGCAT | 1 cut(s) | 102 |
| NspV | TTCGAA | 1 cut(s) | 344 |
| PagI | TCATGA | 1 cut(s) | 400 |
| PfeI | GAWTC | 1 cut(s) | 271 |
| PfoI | TCCNGGA | 1 cut(s) | 151 |
| PinAI | ACCGGT | 1 cut(s) | 463 |
| PkrI | GCNGC | 1 cut(s) | 515 |
| PpuMI | RGGWCCY | 1 cut(s) | 325 |
| Psp5II | RGGWCCY | 1 cut(s) | 325 |
| Psp6I | CCWGG | 1 cut(s) | 151 |
| PspGI | CCWGG | 1 cut(s) | 151 |
| PspN4I | GGNNCC | 2 cut(s) | 136, 327 |
| PspPI | GGNCC | 4 cut(s) | 178, 236, 325, 662 |
| PspPPI | RGGWCCY | 1 cut(s) | 325 |
| PsuI | RGATCY | 1 cut(s) | 187 |
| RsaI | GTAC | 1 cut(s) | 621 |
| RsaNI | GTAC | 1 cut(s) | 620 |
| RseI | CAYNNNNRTG | 1 cut(s) | 918 |
| SaqAI | TTAA | 3 cut(s) | 143, 416, 443 |
| SatI | GCNGC | 1 cut(s) | 514 |
| Sau3AI | GATC | 2 cut(s) | 187, 373 |
| Sau96I | GGNCC | 4 cut(s) | 178, 236, 325, 662 |
| ScrFI | CCNGG | 1 cut(s) | 153 |
| SfaNI | GCATC | 2 cut(s) | 87, 539 |
| SfuI | TTCGAA | 1 cut(s) | 344 |
| SinI | GGWCC | 3 cut(s) | 236, 325, 662 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 918 |
| SmlI | CTYRAG | 1 cut(s) | 581 |
| SmoI | CTYRAG | 1 cut(s) | 581 |
| Sse9I | AATT | 6 cut(s) | 65, 293, 546, 653, 763, 828 |
| SspMI | CTAG | 2 cut(s) | 89, 638 |
| StyD4I | CCNGG | 1 cut(s) | 151 |
| TaaI | ACNGT | 2 cut(s) | 341, 631 |
| TaqI | TCGA | 2 cut(s) | 344, 609 |
| TasI | AATT | 6 cut(s) | 65, 293, 546, 653, 763, 828 |
| TfiI | GAWTC | 1 cut(s) | 271 |
| Tru1I | TTAA | 3 cut(s) | 143, 416, 443 |
| Tru9I | TTAA | 3 cut(s) | 143, 416, 443 |
| TscAI | CASTG | 1 cut(s) | 89 |
| TseI | GCWGC | 1 cut(s) | 513 |
| TspDTI | ATGAA | 6 cut(s) | 23, 188, 335, 407, 591, 719 |
| TspGWI | ACGGA | 1 cut(s) | 678 |
| TspRI | CASTG | 1 cut(s) | 89 |
| VpaK11BI | GGWCC | 3 cut(s) | 236, 325, 662 |
| XapI | RAATTY | 3 cut(s) | 65, 546, 828 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 264 |
| XspI | CTAG | 2 cut(s) | 89, 638 |
| Zsp2I | ATGCAT | 1 cut(s) | 102 |