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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 247 |
| AccII | CGCG | 1 cut(s) | 233 |
| AcoI | YGGCCR | 1 cut(s) | 79 |
| AfaI | GTAC | 1 cut(s) | 32 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 205 |
| AgsI | TTSAA | 2 cut(s) | 13, 104 |
| AjnI | CCWGG | 1 cut(s) | 121 |
| AluBI | AGCT | 1 cut(s) | 112 |
| AluI | AGCT | 1 cut(s) | 112 |
| Alw26I | GTCTC | 1 cut(s) | 184 |
| AoxI | GGCC | 1 cut(s) | 79 |
| ApeKI | GCWGC | 1 cut(s) | 52 |
| AsuHPI | GGTGA | 1 cut(s) | 100 |
| AsuNHI | GCTAGC | 1 cut(s) | 154 |
| BalI | TGGCCA | 1 cut(s) | 81 |
| BbvI | GCAGC | 1 cut(s) | 39 |
| BciT130I | CCWGG | 1 cut(s) | 123 |
| BcoDI | GTCTC | 1 cut(s) | 184 |
| BfaI | CTAG | 1 cut(s) | 155 |
| BisI | GCNGC | 1 cut(s) | 53 |
| BlsI | GCNGC | 1 cut(s) | 54 |
| Bme1390I | CCNGG | 1 cut(s) | 123 |
| BmrFI | CCNGG | 1 cut(s) | 123 |
| BmtI | GCTAGC | 1 cut(s) | 158 |
| BpuEI | CTTGAG | 1 cut(s) | 272 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 205 |
| Bse1I | ACTGG | 1 cut(s) | 82 |
| Bse3DI | GCAATG | 1 cut(s) | 178 |
| BseBI | CCWGG | 1 cut(s) | 123 |
| BseGI | GGATG | 1 cut(s) | 132 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 205 |
| BseMI | GCAATG | 1 cut(s) | 178 |
| BseNI | ACTGG | 1 cut(s) | 82 |
| BseXI | GCAGC | 1 cut(s) | 39 |
| Bsh1236I | CGCG | 1 cut(s) | 233 |
| Bsh1285I | CGRYCG | 1 cut(s) | 247 |
| BshFI | GGCC | 1 cut(s) | 81 |
| BsiEI | CGRYCG | 1 cut(s) | 247 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 205 |
| BsmAI | GTCTC | 1 cut(s) | 184 |
| BsnI | GGCC | 1 cut(s) | 81 |
| Bsp143I | GATC | 1 cut(s) | 237 |
| Bsp68I | TCGCGA | 1 cut(s) | 233 |
| BspANI | GGCC | 1 cut(s) | 81 |
| BspFNI | CGCG | 1 cut(s) | 233 |
| BspOI | GCTAGC | 1 cut(s) | 158 |
| BsrDI | GCAATG | 1 cut(s) | 178 |
| BsrI | ACTGG | 1 cut(s) | 82 |
| BssMI | GATC | 1 cut(s) | 237 |
| Bst2UI | CCWGG | 1 cut(s) | 123 |
| Bst6I | CTCTTC | 1 cut(s) | 8 |
| BstC8I | GCNNGC | 2 cut(s) | 114, 156 |
| BstDEI | CTNAG | 1 cut(s) | 224 |
| BstEII | GGTNACC | 1 cut(s) | 194 |
| BstF5I | GGATG | 1 cut(s) | 132 |
| BstFNI | CGCG | 1 cut(s) | 233 |
| BstKTI | GATC | 1 cut(s) | 240 |
| BstMAI | GTCTC | 1 cut(s) | 184 |
| BstMBI | GATC | 1 cut(s) | 237 |
| BstMCI | CGRYCG | 1 cut(s) | 247 |
| BstNI | CCWGG | 1 cut(s) | 123 |
| BstPI | GGTNACC | 1 cut(s) | 194 |
| BstSCI | CCNGG | 1 cut(s) | 121 |
| BstUI | CGCG | 1 cut(s) | 233 |
| BstV1I | GCAGC | 1 cut(s) | 39 |
| BsuRI | GGCC | 1 cut(s) | 81 |
| BtgZI | GCGATG | 1 cut(s) | 248 |
| BtsCI | GGATG | 1 cut(s) | 132 |
| BtsI | GCAGTG | 1 cut(s) | 264 |
| BtsIMutI | CAGTG | 2 cut(s) | 89, 264 |
| BtuMI | TCGCGA | 1 cut(s) | 233 |
| Cac8I | GCNNGC | 2 cut(s) | 114, 156 |
| CsiI | ACCWGGT | 1 cut(s) | 121 |
| Csp6I | GTAC | 1 cut(s) | 31 |
| CviJI | RGCY | 4 cut(s) | 52, 81, 112, 154 |
| CviKI_1 | RGCY | 4 cut(s) | 52, 81, 112, 154 |
| CviQI | GTAC | 1 cut(s) | 31 |
| DdeI | CTNAG | 1 cut(s) | 224 |
| DpnI | GATC | 1 cut(s) | 239 |
| DpnII | GATC | 1 cut(s) | 237 |
| EaeI | YGGCCR | 1 cut(s) | 79 |
| Eam1104I | CTCTTC | 1 cut(s) | 8 |
| EarI | CTCTTC | 1 cut(s) | 8 |
| Eco91I | GGTNACC | 1 cut(s) | 194 |
| EcoO65I | GGTNACC | 1 cut(s) | 194 |
| EcoRII | CCWGG | 1 cut(s) | 121 |
| FaiI | YATR | 1 cut(s) | 218 |
| FblI | GTMKAC | 1 cut(s) | 247 |
| Fnu4HI | GCNGC | 1 cut(s) | 53 |
| FokI | GGATG | 1 cut(s) | 119 |
| Fsp4HI | GCNGC | 1 cut(s) | 53 |
| FspBI | CTAG | 1 cut(s) | 155 |
| GluI | GCNGC | 1 cut(s) | 53 |
| HaeIII | GGCC | 1 cut(s) | 81 |
| HincII | GTYRAC | 1 cut(s) | 248 |
| HindII | GTYRAC | 1 cut(s) | 248 |
| HinfI | GANTC | 1 cut(s) | 104 |
| HphI | GGTGA | 1 cut(s) | 100 |
| Hpy166II | GTNNAC | 1 cut(s) | 248 |
| Hpy188III | TCNNGA | 2 cut(s) | 181, 232 |
| Hpy8I | GTNNAC | 1 cut(s) | 248 |
| HpyAV | CCTTC | 1 cut(s) | 85 |
| HpyCH4V | TGCA | 2 cut(s) | 116, 213 |
| HpyF3I | CTNAG | 1 cut(s) | 224 |
| Kzo9I | GATC | 1 cut(s) | 237 |
| LmnI | GCTCC | 1 cut(s) | 4 |
| LpnPI | CCDG | 5 cut(s) | 41, 95, 108, 135, 150 |
| Lsp1109I | GCAGC | 1 cut(s) | 39 |
| MabI | ACCWGGT | 1 cut(s) | 121 |
| MaeI | CTAG | 1 cut(s) | 155 |
| MaeIII | GTNAC | 2 cut(s) | 128, 194 |
| MalI | GATC | 1 cut(s) | 239 |
| MboI | GATC | 1 cut(s) | 237 |
| MboII | GAAGA | 2 cut(s) | 25, 232 |
| MlsI | TGGCCA | 1 cut(s) | 81 |
| MluNI | TGGCCA | 1 cut(s) | 81 |
| MnlI | CCTC | 3 cut(s) | 9, 90, 141 |
| Mox20I | TGGCCA | 1 cut(s) | 81 |
| MscI | TGGCCA | 1 cut(s) | 81 |
| Msp20I | TGGCCA | 1 cut(s) | 81 |
| MspR9I | CCNGG | 1 cut(s) | 123 |
| MvaI | CCWGG | 1 cut(s) | 123 |
| MvnI | CGCG | 1 cut(s) | 233 |
| NdeII | GATC | 1 cut(s) | 237 |
| NheI | GCTAGC | 1 cut(s) | 154 |
| NmuCI | GTSAC | 1 cut(s) | 128 |
| NruI | TCGCGA | 1 cut(s) | 233 |
| PfeI | GAWTC | 1 cut(s) | 104 |
| PkrI | GCNGC | 1 cut(s) | 54 |
| Psp6I | CCWGG | 1 cut(s) | 121 |
| PspEI | GGTNACC | 1 cut(s) | 194 |
| PspGI | CCWGG | 1 cut(s) | 121 |
| RruI | TCGCGA | 1 cut(s) | 233 |
| RsaI | GTAC | 1 cut(s) | 32 |
| RsaNI | GTAC | 1 cut(s) | 31 |
| SalI | GTCGAC | 1 cut(s) | 246 |
| SatI | GCNGC | 1 cut(s) | 53 |
| Sau3AI | GATC | 1 cut(s) | 237 |
| ScrFI | CCNGG | 1 cut(s) | 123 |
| SetI | ASST | 4 cut(s) | 114, 127, 152, 288 |
| SexAI | ACCWGGT | 1 cut(s) | 121 |
| SmlI | CTYRAG | 1 cut(s) | 287 |
| SmoI | CTYRAG | 1 cut(s) | 287 |
| SspMI | CTAG | 1 cut(s) | 155 |
| StyD4I | CCNGG | 1 cut(s) | 121 |
| TaqI | TCGA | 2 cut(s) | 182, 247 |
| TaqII | GACCGA | 1 cut(s) | 233 |
| TatI | WGTACW | 1 cut(s) | 30 |
| TfiI | GAWTC | 1 cut(s) | 104 |
| TscAI | CASTG | 2 cut(s) | 89, 264 |
| TseFI | GTSAC | 1 cut(s) | 128 |
| TseI | GCWGC | 1 cut(s) | 52 |
| Tsp45I | GTSAC | 1 cut(s) | 128 |
| TspDTI | ATGAA | 2 cut(s) | 177, 189 |
| TspRI | CASTG | 2 cut(s) | 89, 264 |
| XmiI | GTMKAC | 1 cut(s) | 247 |
| XspI | CTAG | 1 cut(s) | 155 |