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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 37 |
| AciI | CCGC | 2 cut(s) | 341, 365 |
| AcuI | CTGAAG | 1 cut(s) | 378 |
| AfaI | GTAC | 2 cut(s) | 173, 284 |
| AgsI | TTSAA | 3 cut(s) | 41, 149, 278 |
| AluBI | AGCT | 3 cut(s) | 163, 385, 442 |
| AluI | AGCT | 3 cut(s) | 163, 385, 442 |
| AoxI | GGCC | 1 cut(s) | 323 |
| ApeKI | GCWGC | 2 cut(s) | 96, 121 |
| AspS9I | GGNCC | 1 cut(s) | 245 |
| AsuHPI | GGTGA | 1 cut(s) | 209 |
| AsuII | TTCGAA | 1 cut(s) | 310 |
| AvaII | GGWCC | 1 cut(s) | 245 |
| BbvI | GCAGC | 2 cut(s) | 108, 108 |
| BccI | CCATC | 3 cut(s) | 190, 255, 424 |
| BciVI | GTATCC | 1 cut(s) | 279 |
| BclI | TGATCA | 1 cut(s) | 63 |
| BfaI | CTAG | 1 cut(s) | 221 |
| BfmI | CTRYAG | 1 cut(s) | 94 |
| BfuAI | ACCTGC | 1 cut(s) | 37 |
| BfuI | GTATCC | 1 cut(s) | 279 |
| BisI | GCNGC | 2 cut(s) | 97, 122 |
| BlsI | GCNGC | 2 cut(s) | 98, 123 |
| BmcAI | AGTACT | 1 cut(s) | 173 |
| Bme18I | GGWCC | 1 cut(s) | 245 |
| BmgT120I | GGNCC | 1 cut(s) | 245 |
| Bpu14I | TTCGAA | 1 cut(s) | 310 |
| BsaXI | ACNNNNNCTCC | 1 cut(s) | 27 |
| Bse1I | ACTGG | 1 cut(s) | 248 |
| Bse3DI | GCAATG | 1 cut(s) | 336 |
| BseGI | GGATG | 1 cut(s) | 270 |
| BseMI | GCAATG | 1 cut(s) | 336 |
| BseNI | ACTGG | 1 cut(s) | 248 |
| BseXI | GCAGC | 2 cut(s) | 108, 108 |
| BshFI | GGCC | 1 cut(s) | 325 |
| BsnI | GGCC | 1 cut(s) | 325 |
| Bsp119I | TTCGAA | 1 cut(s) | 310 |
| Bsp143I | GATC | 1 cut(s) | 63 |
| BspACI | CCGC | 2 cut(s) | 341, 365 |
| BspANI | GGCC | 1 cut(s) | 325 |
| BspMAI | CTGCAG | 1 cut(s) | 98 |
| BspMI | ACCTGC | 1 cut(s) | 37 |
| BspT104I | TTCGAA | 1 cut(s) | 310 |
| BsrDI | GCAATG | 1 cut(s) | 336 |
| BsrI | ACTGG | 1 cut(s) | 248 |
| BssMI | GATC | 1 cut(s) | 63 |
| Bst4CI | ACNGT | 2 cut(s) | 214, 406 |
| Bst6I | CTCTTC | 1 cut(s) | 354 |
| BstBI | TTCGAA | 1 cut(s) | 310 |
| BstDEI | CTNAG | 1 cut(s) | 448 |
| BstF5I | GGATG | 1 cut(s) | 270 |
| BstKTI | GATC | 1 cut(s) | 66 |
| BstMBI | GATC | 1 cut(s) | 63 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 43, 362 |
| BstSFI | CTRYAG | 1 cut(s) | 94 |
| BstV1I | GCAGC | 2 cut(s) | 108, 108 |
| BsuI | GTATCC | 1 cut(s) | 279 |
| BsuRI | GGCC | 1 cut(s) | 325 |
| BtsCI | GGATG | 1 cut(s) | 270 |
| BveI | ACCTGC | 1 cut(s) | 37 |
| Cfr13I | GGNCC | 1 cut(s) | 245 |
| Csp6I | GTAC | 2 cut(s) | 172, 283 |
| CviAII | CATG | 1 cut(s) | 286 |
| CviJI | RGCY | 5 cut(s) | 121, 163, 325, 385, 442 |
| CviKI_1 | RGCY | 5 cut(s) | 121, 163, 325, 385, 442 |
| CviQI | GTAC | 2 cut(s) | 172, 283 |
| DdeI | CTNAG | 1 cut(s) | 448 |
| DpnI | GATC | 1 cut(s) | 65 |
| DpnII | GATC | 1 cut(s) | 63 |
| Eam1104I | CTCTTC | 1 cut(s) | 354 |
| EarI | CTCTTC | 1 cut(s) | 354 |
| Eco47I | GGWCC | 1 cut(s) | 245 |
| Eco57I | CTGAAG | 1 cut(s) | 378 |
| FaeI | CATG | 1 cut(s) | 289 |
| FaiI | YATR | 8 cut(s) | 26, 73, 197, 241, 287, 306, 351, 431 |
| FatI | CATG | 1 cut(s) | 285 |
| FbaI | TGATCA | 1 cut(s) | 63 |
| Fnu4HI | GCNGC | 2 cut(s) | 97, 122 |
| FokI | GGATG | 1 cut(s) | 277 |
| Fsp4HI | GCNGC | 2 cut(s) | 97, 122 |
| FspBI | CTAG | 1 cut(s) | 221 |
| GluI | GCNGC | 2 cut(s) | 97, 122 |
| HaeIII | GGCC | 1 cut(s) | 325 |
| Hin1II | CATG | 1 cut(s) | 289 |
| HindIII | AAGCTT | 1 cut(s) | 440 |
| HinfI | GANTC | 1 cut(s) | 412 |
| HphI | GGTGA | 1 cut(s) | 209 |
| Hpy166II | GTNNAC | 4 cut(s) | 140, 217, 245, 253 |
| Hpy188I | TCNGA | 2 cut(s) | 53, 421 |
| Hpy8I | GTNNAC | 4 cut(s) | 140, 217, 245, 253 |
| HpyAV | CCTTC | 1 cut(s) | 323 |
| HpyCH4III | ACNGT | 2 cut(s) | 214, 406 |
| HpyCH4V | TGCA | 4 cut(s) | 4, 96, 297, 336 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 43, 362 |
| HpyF3I | CTNAG | 1 cut(s) | 448 |
| Hsp92II | CATG | 1 cut(s) | 289 |
| Ksp22I | TGATCA | 1 cut(s) | 63 |
| Kzo9I | GATC | 1 cut(s) | 63 |
| LpnPI | CCDG | 7 cut(s) | 30, 32, 52, 89, 149, 261, 339 |
| Lsp1109I | GCAGC | 2 cut(s) | 108, 108 |
| MaeI | CTAG | 1 cut(s) | 221 |
| MalI | GATC | 1 cut(s) | 65 |
| MboI | GATC | 1 cut(s) | 63 |
| MboII | GAAGA | 2 cut(s) | 301, 371 |
| MluCI | AATT | 1 cut(s) | 54 |
| MnlI | CCTC | 6 cut(s) | 23, 23, 223, 355, 427, 435 |
| MseI | TTAA | 1 cut(s) | 84 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 43, 362 |
| NdeII | GATC | 1 cut(s) | 63 |
| NlaIII | CATG | 1 cut(s) | 289 |
| NspV | TTCGAA | 1 cut(s) | 310 |
| PfeI | GAWTC | 1 cut(s) | 412 |
| PkrI | GCNGC | 2 cut(s) | 98, 123 |
| PspPI | GGNCC | 1 cut(s) | 245 |
| PstI | CTGCAG | 1 cut(s) | 98 |
| RsaI | GTAC | 2 cut(s) | 173, 284 |
| RsaNI | GTAC | 2 cut(s) | 172, 283 |
| SaqAI | TTAA | 1 cut(s) | 84 |
| SatI | GCNGC | 2 cut(s) | 97, 122 |
| Sau3AI | GATC | 1 cut(s) | 63 |
| Sau96I | GGNCC | 1 cut(s) | 245 |
| ScaI | AGTACT | 1 cut(s) | 173 |
| SfcI | CTRYAG | 1 cut(s) | 94 |
| SfuI | TTCGAA | 1 cut(s) | 310 |
| SinI | GGWCC | 1 cut(s) | 245 |
| Sse9I | AATT | 1 cut(s) | 54 |
| SsiI | CCGC | 2 cut(s) | 341, 365 |
| SspMI | CTAG | 1 cut(s) | 221 |
| TaaI | ACNGT | 2 cut(s) | 214, 406 |
| TaqI | TCGA | 2 cut(s) | 259, 310 |
| TasI | AATT | 1 cut(s) | 54 |
| TatI | WGTACW | 1 cut(s) | 171 |
| TfiI | GAWTC | 1 cut(s) | 412 |
| Tru1I | TTAA | 1 cut(s) | 84 |
| Tru9I | TTAA | 1 cut(s) | 84 |
| TseI | GCWGC | 2 cut(s) | 96, 121 |
| TspDTI | ATGAA | 4 cut(s) | 102, 194, 302, 379 |
| VpaK11BI | GGWCC | 1 cut(s) | 245 |
| XspI | CTAG | 1 cut(s) | 221 |
| ZrmI | AGTACT | 1 cut(s) | 173 |