TdcA1-ORF2 protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| DUF4218 | PF13960 | 3 - 39 | 3.8e-09 | Domain of unknown function (DUF4218) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 75 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 589 |
| AccII | CGCG | 1 cut(s) | 41 |
| AciI | CCGC | 4 cut(s) | 39, 128, 366, 553 |
| AcsI | RAATTY | 2 cut(s) | 198, 526 |
| AcuI | CTGAAG | 2 cut(s) | 66, 81 |
| AdeI | CACNNNGTG | 1 cut(s) | 548 |
| AfaI | GTAC | 2 cut(s) | 150, 335 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 252, 253, 343, 589 |
| AgsI | TTSAA | 6 cut(s) | 118, 160, 188, 281, 320, 386 |
| AluBI | AGCT | 2 cut(s) | 59, 235 |
| AluI | AGCT | 2 cut(s) | 59, 235 |
| Alw26I | GTCTC | 3 cut(s) | 3, 178, 498 |
| Ama87I | CYCGRG | 1 cut(s) | 329 |
| ApoI | RAATTY | 2 cut(s) | 198, 526 |
| AspLEI | GCGC | 2 cut(s) | 43, 76 |
| AsuHPI | GGTGA | 4 cut(s) | 79, 335, 389, 484 |
| AvaI | CYCGRG | 1 cut(s) | 329 |
| BauI | CACGAG | 1 cut(s) | 77 |
| BccI | CCATC | 2 cut(s) | 306, 386 |
| BcoDI | GTCTC | 3 cut(s) | 3, 178, 498 |
| BfaI | CTAG | 2 cut(s) | 236, 428 |
| BisI | GCNGC | 1 cut(s) | 367 |
| BlsI | GCNGC | 1 cut(s) | 368 |
| BmeT110I | CYCGRG | 1 cut(s) | 329 |
| BpmI | CTGGAG | 1 cut(s) | 160 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 252, 253, 343, 589 |
| Bse118I | RCCGGY | 1 cut(s) | 139 |
| Bse1I | ACTGG | 3 cut(s) | 177, 254, 290 |
| Bse3DI | GCAATG | 1 cut(s) | 240 |
| BseGI | GGATG | 3 cut(s) | 56, 294, 378 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 252, 253, 343, 589 |
| BseMI | GCAATG | 1 cut(s) | 240 |
| BseNI | ACTGG | 3 cut(s) | 177, 254, 290 |
| Bsh1236I | CGCG | 1 cut(s) | 41 |
| BsiHKCI | CYCGRG | 1 cut(s) | 329 |
| BsiSI | CCGG | 1 cut(s) | 140 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 252, 253, 343, 589 |
| BsmAI | GTCTC | 3 cut(s) | 3, 178, 498 |
| BsoBI | CYCGRG | 1 cut(s) | 329 |
| Bsp143I | GATC | 1 cut(s) | 325 |
| BspACI | CCGC | 4 cut(s) | 39, 128, 366, 553 |
| BspFNI | CGCG | 1 cut(s) | 41 |
| BsrDI | GCAATG | 1 cut(s) | 240 |
| BsrFI | RCCGGY | 1 cut(s) | 139 |
| BsrI | ACTGG | 3 cut(s) | 177, 254, 290 |
| BssAI | RCCGGY | 1 cut(s) | 139 |
| BssMI | GATC | 1 cut(s) | 325 |
| BssSI | CACGAG | 1 cut(s) | 77 |
| Bst2BI | CACGAG | 1 cut(s) | 77 |
| Bst4CI | ACNGT | 2 cut(s) | 269, 575 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 71, 136 |
| BstC8I | GCNNGC | 1 cut(s) | 482 |
| BstDEI | CTNAG | 1 cut(s) | 419 |
| BstEII | GGTNACC | 1 cut(s) | 395 |
| BstF5I | GGATG | 3 cut(s) | 56, 294, 378 |
| BstFNI | CGCG | 1 cut(s) | 41 |
| BstHHI | GCGC | 2 cut(s) | 43, 76 |
| BstKTI | GATC | 1 cut(s) | 328 |
| BstMAI | GTCTC | 3 cut(s) | 3, 178, 498 |
| BstMBI | GATC | 1 cut(s) | 325 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 71, 136 |
| BstPI | GGTNACC | 1 cut(s) | 395 |
| BstUI | CGCG | 1 cut(s) | 41 |
| BtgZI | GCGATG | 1 cut(s) | 446 |
| BtsCI | GGATG | 3 cut(s) | 56, 294, 378 |
| BtsIMutI | CAGTG | 3 cut(s) | 184, 247, 594 |
| Cac8I | GCNNGC | 1 cut(s) | 482 |
| CfoI | GCGC | 2 cut(s) | 43, 76 |
| Cfr10I | RCCGGY | 1 cut(s) | 139 |
| CseI | GACGC | 1 cut(s) | 73 |
| Csp6I | GTAC | 2 cut(s) | 149, 334 |
| CviAII | CATG | 6 cut(s) | 94, 136, 230, 538, 545, 616 |
| CviJI | RGCY | 5 cut(s) | 29, 59, 235, 369, 439 |
| CviKI_1 | RGCY | 5 cut(s) | 29, 59, 235, 369, 439 |
| CviQI | GTAC | 2 cut(s) | 149, 334 |
| DdeI | CTNAG | 1 cut(s) | 419 |
| DpnI | GATC | 1 cut(s) | 327 |
| DpnII | GATC | 1 cut(s) | 325 |
| DraIII | CACNNNGTG | 1 cut(s) | 548 |
| EciI | GGCGGA | 1 cut(s) | 568 |
| Eco57I | CTGAAG | 2 cut(s) | 66, 81 |
| Eco88I | CYCGRG | 1 cut(s) | 329 |
| Eco91I | GGTNACC | 1 cut(s) | 395 |
| EcoO65I | GGTNACC | 1 cut(s) | 395 |
| EcoRI | GAATTC | 1 cut(s) | 526 |
| FaeI | CATG | 6 cut(s) | 97, 139, 233, 541, 548, 619 |
| FatI | CATG | 6 cut(s) | 93, 135, 229, 537, 544, 615 |
| Fnu4HI | GCNGC | 1 cut(s) | 367 |
| FokI | GGATG | 3 cut(s) | 63, 281, 385 |
| Fsp4HI | GCNGC | 1 cut(s) | 367 |
| FspBI | CTAG | 2 cut(s) | 236, 428 |
| FspI | TGCGCA | 1 cut(s) | 75 |
| GlaI | GCGC | 2 cut(s) | 42, 75 |
| GluI | GCNGC | 1 cut(s) | 367 |
| GsuI | CTGGAG | 1 cut(s) | 160 |
| HapII | CCGG | 1 cut(s) | 140 |
| HgaI | GACGC | 1 cut(s) | 73 |
| HhaI | GCGC | 2 cut(s) | 43, 76 |
| Hin1II | CATG | 6 cut(s) | 97, 139, 233, 541, 548, 619 |
| Hin6I | GCGC | 2 cut(s) | 41, 74 |
| HinP1I | GCGC | 2 cut(s) | 41, 74 |
| HincII | GTYRAC | 1 cut(s) | 565 |
| HindII | GTYRAC | 1 cut(s) | 565 |
| HinfI | GANTC | 1 cut(s) | 209 |
| HpaII | CCGG | 1 cut(s) | 140 |
| HphI | GGTGA | 4 cut(s) | 79, 335, 389, 484 |
| Hpy166II | GTNNAC | 1 cut(s) | 565 |
| Hpy188I | TCNGA | 1 cut(s) | 462 |
| Hpy188III | TCNNGA | 4 cut(s) | 272, 311, 329, 450 |
| Hpy8I | GTNNAC | 1 cut(s) | 565 |
| HpyAV | CCTTC | 3 cut(s) | 41, 112, 507 |
| HpyCH4III | ACNGT | 2 cut(s) | 269, 575 |
| HpyCH4IV | ACGT | 1 cut(s) | 315 |
| HpyCH4V | TGCA | 3 cut(s) | 223, 468, 484 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 71, 136 |
| HpyF3I | CTNAG | 1 cut(s) | 419 |
| HpySE526I | ACGT | 1 cut(s) | 315 |
| Hsp92II | CATG | 6 cut(s) | 97, 139, 233, 541, 548, 619 |
| HspAI | GCGC | 2 cut(s) | 41, 74 |
| Kzo9I | GATC | 1 cut(s) | 325 |
| LmnI | GCTCC | 1 cut(s) | 110 |
| MaeI | CTAG | 2 cut(s) | 236, 428 |
| MaeII | ACGT | 1 cut(s) | 315 |
| MaeIII | GTNAC | 2 cut(s) | 85, 395 |
| MalI | GATC | 1 cut(s) | 327 |
| MboI | GATC | 1 cut(s) | 325 |
| MluCI | AATT | 5 cut(s) | 198, 386, 403, 485, 526 |
| MlyI | GAGTC | 1 cut(s) | 203 |
| MseI | TTAA | 1 cut(s) | 264 |
| MslI | CAYNNNNRTG | 1 cut(s) | 92 |
| MspI | CCGG | 1 cut(s) | 140 |
| MvnI | CGCG | 1 cut(s) | 41 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 71, 136 |
| NdeII | GATC | 1 cut(s) | 325 |
| NlaIII | CATG | 6 cut(s) | 97, 139, 233, 541, 548, 619 |
| NmuCI | GTSAC | 2 cut(s) | 85, 395 |
| NsbI | TGCGCA | 1 cut(s) | 75 |
| PaeR7I | CTCGAG | 1 cut(s) | 329 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 589 |
| PkrI | GCNGC | 1 cut(s) | 368 |
| PleI | GAGTC | 1 cut(s) | 203 |
| PpsI | GAGTC | 1 cut(s) | 203 |
| PspEI | GGTNACC | 1 cut(s) | 395 |
| RsaI | GTAC | 2 cut(s) | 150, 335 |
| RsaNI | GTAC | 2 cut(s) | 149, 334 |
| RseI | CAYNNNNRTG | 1 cut(s) | 92 |
| SaqAI | TTAA | 1 cut(s) | 264 |
| SatI | GCNGC | 1 cut(s) | 367 |
| Sau3AI | GATC | 1 cut(s) | 325 |
| SchI | GAGTC | 1 cut(s) | 203 |
| SetI | ASST | 6 cut(s) | 61, 92, 237, 318, 325, 474 |
| Sfr274I | CTCGAG | 1 cut(s) | 329 |
| SlaI | CTCGAG | 1 cut(s) | 329 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 92 |
| SmlI | CTYRAG | 1 cut(s) | 329 |
| SmoI | CTYRAG | 1 cut(s) | 329 |
| Sse9I | AATT | 5 cut(s) | 198, 386, 403, 485, 526 |
| SsiI | CCGC | 4 cut(s) | 39, 128, 366, 553 |
| SspMI | CTAG | 2 cut(s) | 236, 428 |
| TaaI | ACNGT | 2 cut(s) | 269, 575 |
| TaiI | ACGT | 1 cut(s) | 318 |
| TaqI | TCGA | 1 cut(s) | 330 |
| TasI | AATT | 5 cut(s) | 198, 386, 403, 485, 526 |
| TauI | GCSGC | 1 cut(s) | 369 |
| Tru1I | TTAA | 1 cut(s) | 264 |
| Tru9I | TTAA | 1 cut(s) | 264 |
| TscAI | CASTG | 3 cut(s) | 184, 254, 594 |
| TseFI | GTSAC | 2 cut(s) | 85, 395 |
| Tsp45I | GTSAC | 2 cut(s) | 85, 395 |
| TspDTI | ATGAA | 3 cut(s) | 110, 389, 449 |
| TspRI | CASTG | 3 cut(s) | 184, 254, 594 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 589 |
| XapI | RAATTY | 2 cut(s) | 198, 526 |
| XhoI | CTCGAG | 1 cut(s) | 329 |
| XspI | CTAG | 2 cut(s) | 236, 428 |