TdcA1-ORF2 protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| DUF4216 | PF13952 | 20 - 90 | 5e-20 | Domain of unknown function (DUF4216) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 52 |
| AccII | CGCG | 1 cut(s) | 257 |
| AciI | CCGC | 4 cut(s) | 16, 122, 302, 410 |
| AclWI | GGATC | 1 cut(s) | 455 |
| AcsI | RAATTY | 1 cut(s) | 426 |
| AdeI | CACNNNGTG | 1 cut(s) | 11 |
| AfaI | GTAC | 1 cut(s) | 146 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 52, 247 |
| AflIII | ACRYGT | 1 cut(s) | 255 |
| AgsI | TTSAA | 2 cut(s) | 97, 163 |
| Alw21I | GWGCWC | 2 cut(s) | 90, 282 |
| Alw44I | GTGCAC | 2 cut(s) | 86, 278 |
| AlwI | GGATC | 1 cut(s) | 455 |
| AoxI | GGCC | 2 cut(s) | 119, 318 |
| ApaLI | GTGCAC | 2 cut(s) | 86, 278 |
| ApoI | RAATTY | 1 cut(s) | 426 |
| AseI | ATTAAT | 1 cut(s) | 522 |
| AsuC2I | CCSGG | 1 cut(s) | 299 |
| AsuHPI | GGTGA | 2 cut(s) | 263, 383 |
| BaeGI | GKGCMC | 2 cut(s) | 90, 282 |
| BanII | GRGCYC | 1 cut(s) | 357 |
| BbsI | GAAGAC | 3 cut(s) | 140, 330, 489 |
| Bbv12I | GWGCWC | 2 cut(s) | 90, 282 |
| BccI | CCATC | 1 cut(s) | 99 |
| BcnI | CCSGG | 1 cut(s) | 299 |
| BfaI | CTAG | 1 cut(s) | 117 |
| BisI | GCNGC | 2 cut(s) | 122, 303 |
| BlsI | GCNGC | 2 cut(s) | 123, 304 |
| Bme1390I | CCNGG | 1 cut(s) | 299 |
| BmrFI | CCNGG | 1 cut(s) | 299 |
| BpiI | GAAGAC | 3 cut(s) | 140, 330, 489 |
| Bpu10I | CCTNAGC | 1 cut(s) | 246 |
| BpuMI | CCSGG | 1 cut(s) | 299 |
| BsaBI | GATNNNNATC | 2 cut(s) | 459, 465 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 52, 247 |
| Bse8I | GATNNNNATC | 2 cut(s) | 459, 465 |
| BseGI | GGATG | 1 cut(s) | 556 |
| BseJI | GATNNNNATC | 2 cut(s) | 459, 465 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 52, 247 |
| BseRI | GAGGAG | 1 cut(s) | 370 |
| BseSI | GKGCMC | 2 cut(s) | 90, 282 |
| Bsh1236I | CGCG | 1 cut(s) | 257 |
| BshFI | GGCC | 2 cut(s) | 121, 320 |
| BsiHKAI | GWGCWC | 2 cut(s) | 90, 282 |
| BsiSI | CCGG | 1 cut(s) | 298 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 52, 247 |
| BsnI | GGCC | 2 cut(s) | 121, 320 |
| Bsp1286I | GDGCHC | 3 cut(s) | 90, 282, 357 |
| Bsp143I | GATC | 2 cut(s) | 139, 460 |
| BspACI | CCGC | 4 cut(s) | 16, 122, 302, 410 |
| BspANI | GGCC | 2 cut(s) | 121, 320 |
| BspFNI | CGCG | 1 cut(s) | 257 |
| BspPI | GGATC | 1 cut(s) | 455 |
| BssMI | GATC | 2 cut(s) | 139, 460 |
| Bst4CI | ACNGT | 3 cut(s) | 38, 85, 388 |
| Bst6I | CTCTTC | 1 cut(s) | 98 |
| BstDEI | CTNAG | 2 cut(s) | 246, 570 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 245 |
| BstF5I | GGATG | 1 cut(s) | 556 |
| BstFNI | CGCG | 1 cut(s) | 257 |
| BstKTI | GATC | 2 cut(s) | 142, 463 |
| BstMBI | GATC | 2 cut(s) | 139, 460 |
| BstSCI | CCNGG | 1 cut(s) | 297 |
| BstSLI | GKGCMC | 2 cut(s) | 90, 282 |
| BstUI | CGCG | 1 cut(s) | 257 |
| BstV2I | GAAGAC | 3 cut(s) | 140, 330, 489 |
| BsuRI | GGCC | 2 cut(s) | 121, 320 |
| BtgZI | GCGATG | 1 cut(s) | 507 |
| BtsCI | GGATG | 1 cut(s) | 556 |
| BtsI | GCAGTG | 1 cut(s) | 165 |
| BtsIMutI | CAGTG | 3 cut(s) | 57, 90, 165 |
| CseI | GACGC | 1 cut(s) | 263 |
| Csp6I | GTAC | 1 cut(s) | 145 |
| CviAII | CATG | 3 cut(s) | 8, 79, 130 |
| CviJI | RGCY | 6 cut(s) | 121, 305, 320, 355, 448, 568 |
| CviKI_1 | RGCY | 6 cut(s) | 121, 305, 320, 355, 448, 568 |
| CviQI | GTAC | 1 cut(s) | 145 |
| DdeI | CTNAG | 2 cut(s) | 246, 570 |
| DpnI | GATC | 2 cut(s) | 141, 462 |
| DpnII | GATC | 2 cut(s) | 139, 460 |
| DraI | TTTAAA | 1 cut(s) | 406 |
| DraIII | CACNNNGTG | 1 cut(s) | 11 |
| Eam1104I | CTCTTC | 1 cut(s) | 98 |
| EarI | CTCTTC | 1 cut(s) | 98 |
| EciI | GGCGGA | 1 cut(s) | 31 |
| Eco24I | GRGCYC | 1 cut(s) | 357 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 245 |
| EcoRI | GAATTC | 1 cut(s) | 426 |
| EcoT22I | ATGCAT | 1 cut(s) | 507 |
| EcoT38I | GRGCYC | 1 cut(s) | 357 |
| FaeI | CATG | 3 cut(s) | 11, 82, 133 |
| FaiI | YATR | 5 cut(s) | 9, 69, 80, 131, 507 |
| FatI | CATG | 3 cut(s) | 7, 78, 129 |
| FauI | CCCGC | 1 cut(s) | 403 |
| Fnu4HI | GCNGC | 2 cut(s) | 122, 303 |
| FokI | GGATG | 1 cut(s) | 563 |
| FriOI | GRGCYC | 1 cut(s) | 357 |
| Fsp4HI | GCNGC | 2 cut(s) | 122, 303 |
| FspBI | CTAG | 1 cut(s) | 117 |
| GluI | GCNGC | 2 cut(s) | 122, 303 |
| HaeIII | GGCC | 2 cut(s) | 121, 320 |
| HapII | CCGG | 1 cut(s) | 298 |
| HgaI | GACGC | 1 cut(s) | 263 |
| Hin1II | CATG | 3 cut(s) | 11, 82, 133 |
| HincII | GTYRAC | 2 cut(s) | 28, 271 |
| HindII | GTYRAC | 2 cut(s) | 28, 271 |
| HinfI | GANTC | 4 cut(s) | 440, 485, 542, 554 |
| HpaII | CCGG | 1 cut(s) | 298 |
| HphI | GGTGA | 2 cut(s) | 263, 383 |
| Hpy166II | GTNNAC | 5 cut(s) | 28, 88, 271, 280, 391 |
| Hpy188I | TCNGA | 3 cut(s) | 529, 550, 559 |
| Hpy188III | TCNNGA | 4 cut(s) | 233, 350, 431, 470 |
| Hpy8I | GTNNAC | 5 cut(s) | 28, 88, 271, 280, 391 |
| HpyCH4III | ACNGT | 3 cut(s) | 38, 85, 388 |
| HpyCH4V | TGCA | 3 cut(s) | 88, 280, 505 |
| HpyF3I | CTNAG | 2 cut(s) | 246, 570 |
| Hsp92II | CATG | 3 cut(s) | 11, 82, 133 |
| Kzo9I | GATC | 2 cut(s) | 139, 460 |
| LpnPI | CCDG | 3 cut(s) | 311, 474, 528 |
| MaeI | CTAG | 1 cut(s) | 117 |
| MaeIII | GTNAC | 2 cut(s) | 179, 251 |
| MalI | GATC | 2 cut(s) | 141, 462 |
| MboI | GATC | 2 cut(s) | 139, 460 |
| MboII | GAAGA | 6 cut(s) | 85, 145, 335, 344, 347, 494 |
| MhlI | GDGCHC | 3 cut(s) | 90, 282, 357 |
| MluCI | AATT | 4 cut(s) | 400, 426, 519, 523 |
| MluI | ACGCGT | 1 cut(s) | 255 |
| MlyI | GAGTC | 3 cut(s) | 449, 479, 536 |
| MnlI | CCTC | 6 cut(s) | 101, 294, 310, 322, 391, 490 |
| Mph1103I | ATGCAT | 1 cut(s) | 507 |
| MseI | TTAA | 3 cut(s) | 396, 405, 522 |
| MslI | CAYNNNNRTG | 1 cut(s) | 83 |
| MspI | CCGG | 1 cut(s) | 298 |
| MspR9I | CCNGG | 1 cut(s) | 299 |
| MvnI | CGCG | 1 cut(s) | 257 |
| NciI | CCSGG | 1 cut(s) | 299 |
| NdeII | GATC | 2 cut(s) | 139, 460 |
| NlaIII | CATG | 3 cut(s) | 11, 82, 133 |
| NmuCI | GTSAC | 1 cut(s) | 251 |
| NsiI | ATGCAT | 1 cut(s) | 507 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 421 |
| PfeI | GAWTC | 1 cut(s) | 554 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 52 |
| PkrI | GCNGC | 2 cut(s) | 123, 304 |
| PleI | GAGTC | 3 cut(s) | 448, 479, 536 |
| PpsI | GAGTC | 3 cut(s) | 448, 479, 536 |
| PshBI | ATTAAT | 1 cut(s) | 522 |
| RsaI | GTAC | 1 cut(s) | 146 |
| RsaNI | GTAC | 1 cut(s) | 145 |
| RseI | CAYNNNNRTG | 1 cut(s) | 83 |
| SaqAI | TTAA | 3 cut(s) | 396, 405, 522 |
| SatI | GCNGC | 2 cut(s) | 122, 303 |
| Sau3AI | GATC | 2 cut(s) | 139, 460 |
| SchI | GAGTC | 3 cut(s) | 449, 479, 536 |
| ScrFI | CCNGG | 1 cut(s) | 299 |
| SduI | GDGCHC | 3 cut(s) | 90, 282, 357 |
| SetI | ASST | 5 cut(s) | 93, 243, 276, 370, 396 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 83 |
| Sse9I | AATT | 4 cut(s) | 400, 426, 519, 523 |
| SsiI | CCGC | 4 cut(s) | 16, 122, 302, 410 |
| SspI | AATATT | 1 cut(s) | 153 |
| SspMI | CTAG | 1 cut(s) | 117 |
| StyD4I | CCNGG | 1 cut(s) | 297 |
| TaaI | ACNGT | 3 cut(s) | 38, 85, 388 |
| TaqI | TCGA | 1 cut(s) | 286 |
| TaqII | GACCGA | 1 cut(s) | 152 |
| TasI | AATT | 4 cut(s) | 400, 426, 519, 523 |
| TatI | WGTACW | 1 cut(s) | 144 |
| TauI | GCSGC | 2 cut(s) | 124, 305 |
| TfiI | GAWTC | 1 cut(s) | 554 |
| Tru1I | TTAA | 3 cut(s) | 396, 405, 522 |
| Tru9I | TTAA | 3 cut(s) | 396, 405, 522 |
| TscAI | CASTG | 3 cut(s) | 57, 90, 172 |
| TseFI | GTSAC | 1 cut(s) | 251 |
| Tsp45I | GTSAC | 1 cut(s) | 251 |
| TspDTI | ATGAA | 1 cut(s) | 146 |
| TspRI | CASTG | 3 cut(s) | 57, 90, 172 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 52 |
| VneI | GTGCAC | 2 cut(s) | 86, 278 |
| VspI | ATTAAT | 1 cut(s) | 522 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 245 |
| XapI | RAATTY | 1 cut(s) | 426 |
| XspI | CTAG | 1 cut(s) | 117 |
| Zsp2I | ATGCAT | 1 cut(s) | 507 |