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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 699 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1263 |
| AccI | GTMKAC | 1 cut(s) | 506 |
| AccII | CGCG | 1 cut(s) | 492 |
| AccIII | TCCGGA | 1 cut(s) | 34 |
| AciI | CCGC | 3 cut(s) | 803, 992, 1156 |
| AclI | AACGTT | 1 cut(s) | 853 |
| AclWI | GGATC | 1 cut(s) | 922 |
| AcsI | RAATTY | 2 cut(s) | 191, 233 |
| AcuI | CTGAAG | 2 cut(s) | 87, 1001 |
| AdeI | CACNNNGTG | 1 cut(s) | 1263 |
| AfaI | GTAC | 1 cut(s) | 290 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 158, 463, 799, 1074, 1263 |
| AgsI | TTSAA | 7 cut(s) | 221, 271, 362, 637, 858, 883, 956 |
| AluBI | AGCT | 7 cut(s) | 65, 167, 243, 535, 976, 1101, 1135 |
| AluI | AGCT | 7 cut(s) | 65, 167, 243, 535, 976, 1101, 1135 |
| AlwI | GGATC | 1 cut(s) | 922 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 710 |
| Ama87I | CYCGRG | 1 cut(s) | 395 |
| Aor13HI | TCCGGA | 1 cut(s) | 34 |
| AoxI | GGCC | 1 cut(s) | 1254 |
| ApeKI | GCWGC | 2 cut(s) | 164, 976 |
| ApoI | RAATTY | 2 cut(s) | 191, 233 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1134 |
| AspLEI | GCGC | 1 cut(s) | 492 |
| AspS9I | GGNCC | 2 cut(s) | 1065, 1254 |
| AsuHPI | GGTGA | 3 cut(s) | 358, 748, 1006 |
| AsuNHI | GCTAGC | 1 cut(s) | 412 |
| AvaI | CYCGRG | 1 cut(s) | 395 |
| AvaII | GGWCC | 1 cut(s) | 1065 |
| BbsI | GAAGAC | 2 cut(s) | 839, 890 |
| BbvI | GCAGC | 2 cut(s) | 176, 963 |
| BccI | CCATC | 3 cut(s) | 905, 1269, 1283 |
| BciVI | GTATCC | 1 cut(s) | 1182 |
| BfaI | CTAG | 2 cut(s) | 413, 819 |
| BfmI | CTRYAG | 1 cut(s) | 711 |
| BfuI | GTATCC | 1 cut(s) | 1182 |
| BisI | GCNGC | 4 cut(s) | 165, 804, 977, 1156 |
| BlsI | GCNGC | 4 cut(s) | 166, 805, 978, 1157 |
| Bme18I | GGWCC | 1 cut(s) | 1065 |
| BmeT110I | CYCGRG | 1 cut(s) | 395 |
| BmgT120I | GGNCC | 2 cut(s) | 1065, 1254 |
| BmiI | GGNNCC | 3 cut(s) | 791, 1066, 1067 |
| BmsI | GCATC | 3 cut(s) | 40, 129, 815 |
| BmtI | GCTAGC | 1 cut(s) | 416 |
| BoxI | GACNNNNGTC | 1 cut(s) | 543 |
| BpiI | GAAGAC | 2 cut(s) | 839, 890 |
| BsaBI | GATNNNNATC | 2 cut(s) | 780, 919 |
| BsaWI | WCCGGW | 1 cut(s) | 34 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1202, 1232 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 158, 463, 799, 1074, 1263 |
| Bse3DI | GCAATG | 2 cut(s) | 45, 436 |
| Bse8I | GATNNNNATC | 2 cut(s) | 780, 919 |
| BseAI | TCCGGA | 1 cut(s) | 34 |
| BseGI | GGATG | 7 cut(s) | 31, 120, 390, 781, 1280, 1294, 1309 |
| BseJI | GATNNNNATC | 2 cut(s) | 780, 919 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 158, 463, 799, 1074, 1263 |
| BseMI | GCAATG | 2 cut(s) | 45, 436 |
| BseMII | CTCAG | 1 cut(s) | 42 |
| BseXI | GCAGC | 2 cut(s) | 176, 963 |
| BsgI | GTGCAG | 1 cut(s) | 183 |
| Bsh1236I | CGCG | 1 cut(s) | 492 |
| Bsh1285I | CGRYCG | 1 cut(s) | 506 |
| BshFI | GGCC | 1 cut(s) | 1256 |
| BsiEI | CGRYCG | 1 cut(s) | 506 |
| BsiHKCI | CYCGRG | 1 cut(s) | 395 |
| BsiSI | CCGG | 1 cut(s) | 35 |
| BslFI | GGGAC | 4 cut(s) | 422, 728, 1078, 1171 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 158, 463, 799, 1074, 1263 |
| BsmFI | GGGAC | 4 cut(s) | 422, 728, 1078, 1171 |
| BsnI | GGCC | 1 cut(s) | 1256 |
| BsoBI | CYCGRG | 1 cut(s) | 395 |
| Bsp13I | TCCGGA | 1 cut(s) | 34 |
| Bsp143I | GATC | 5 cut(s) | 418, 496, 610, 781, 914 |
| BspACI | CCGC | 3 cut(s) | 803, 992, 1156 |
| BspANI | GGCC | 1 cut(s) | 1256 |
| BspCNI | CTCAG | 1 cut(s) | 43 |
| BspEI | TCCGGA | 1 cut(s) | 34 |
| BspFNI | CGCG | 1 cut(s) | 492 |
| BspHI | TCATGA | 1 cut(s) | 1138 |
| BspLI | GGNNCC | 3 cut(s) | 791, 1066, 1067 |
| BspOI | GCTAGC | 1 cut(s) | 416 |
| BspPI | GGATC | 1 cut(s) | 922 |
| BsrDI | GCAATG | 2 cut(s) | 45, 436 |
| BssMI | GATC | 5 cut(s) | 418, 496, 610, 781, 914 |
| Bst4CI | ACNGT | 1 cut(s) | 662 |
| Bst6I | CTCTTC | 4 cut(s) | 63, 266, 863, 1302 |
| BstC8I | GCNNGC | 3 cut(s) | 201, 215, 414 |
| BstDEI | CTNAG | 5 cut(s) | 51, 483, 864, 1086, 1215 |
| BstEII | GGTNACC | 1 cut(s) | 452 |
| BstF5I | GGATG | 7 cut(s) | 31, 120, 390, 781, 1280, 1294, 1309 |
| BstFNI | CGCG | 1 cut(s) | 492 |
| BstHHI | GCGC | 1 cut(s) | 492 |
| BstKTI | GATC | 5 cut(s) | 421, 499, 613, 784, 917 |
| BstMBI | GATC | 5 cut(s) | 418, 496, 610, 781, 914 |
| BstMCI | CGRYCG | 1 cut(s) | 506 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 71, 982, 1141, 1220 |
| BstNSI | RCATGY | 1 cut(s) | 992 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 543 |
| BstPI | GGTNACC | 1 cut(s) | 452 |
| BstSFI | CTRYAG | 1 cut(s) | 711 |
| BstUI | CGCG | 1 cut(s) | 492 |
| BstV1I | GCAGC | 2 cut(s) | 176, 963 |
| BstV2I | GAAGAC | 2 cut(s) | 839, 890 |
| BstX2I | RGATCY | 1 cut(s) | 914 |
| BstYI | RGATCY | 1 cut(s) | 914 |
| BsuI | GTATCC | 1 cut(s) | 1182 |
| BsuRI | GGCC | 1 cut(s) | 1256 |
| BtgZI | GCGATG | 1 cut(s) | 507 |
| BtsCI | GGATG | 7 cut(s) | 31, 120, 390, 781, 1280, 1294, 1309 |
| BtsI | GCAGTG | 1 cut(s) | 523 |
| BtsIMutI | CAGTG | 2 cut(s) | 225, 523 |
| Cac8I | GCNNGC | 3 cut(s) | 201, 215, 414 |
| CaiI | CAGNNNCTG | 1 cut(s) | 710 |
| CciI | TCATGA | 1 cut(s) | 1138 |
| CfoI | GCGC | 1 cut(s) | 492 |
| Cfr13I | GGNCC | 2 cut(s) | 1065, 1254 |
| Csp6I | GTAC | 1 cut(s) | 289 |
| CviAII | CATG | 5 cut(s) | 139, 259, 328, 989, 1139 |
| CviQI | GTAC | 1 cut(s) | 289 |
| DdeI | CTNAG | 5 cut(s) | 51, 483, 864, 1086, 1215 |
| DpnI | GATC | 5 cut(s) | 420, 498, 612, 783, 916 |
| DpnII | GATC | 5 cut(s) | 418, 496, 610, 781, 914 |
| DraIII | CACNNNGTG | 1 cut(s) | 1263 |
| Eam1104I | CTCTTC | 4 cut(s) | 63, 266, 863, 1302 |
| EarI | CTCTTC | 4 cut(s) | 63, 266, 863, 1302 |
| Eco47I | GGWCC | 1 cut(s) | 1065 |
| Eco57I | CTGAAG | 2 cut(s) | 87, 1001 |
| Eco88I | CYCGRG | 1 cut(s) | 395 |
| Eco91I | GGTNACC | 1 cut(s) | 452 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1065 |
| EcoO65I | GGTNACC | 1 cut(s) | 452 |
| FaeI | CATG | 5 cut(s) | 142, 262, 331, 992, 1142 |
| FaqI | GGGAC | 4 cut(s) | 422, 728, 1078, 1171 |
| FatI | CATG | 5 cut(s) | 138, 258, 327, 988, 1138 |
| FblI | GTMKAC | 1 cut(s) | 506 |
| Fnu4HI | GCNGC | 4 cut(s) | 165, 804, 977, 1156 |
| FokI | GGATG | 6 cut(s) | 18, 107, 377, 788, 1287, 1301 |
| Fsp4HI | GCNGC | 4 cut(s) | 165, 804, 977, 1156 |
| FspBI | CTAG | 2 cut(s) | 413, 819 |
| GlaI | GCGC | 1 cut(s) | 491 |
| GluI | GCNGC | 4 cut(s) | 165, 804, 977, 1156 |
| HaeIII | GGCC | 1 cut(s) | 1256 |
| HapII | CCGG | 1 cut(s) | 35 |
| HhaI | GCGC | 1 cut(s) | 492 |
| Hin1II | CATG | 5 cut(s) | 142, 262, 331, 992, 1142 |
| Hin6I | GCGC | 1 cut(s) | 490 |
| HinP1I | GCGC | 1 cut(s) | 490 |
| HincII | GTYRAC | 1 cut(s) | 507 |
| HindII | GTYRAC | 1 cut(s) | 507 |
| HindIII | AAGCTT | 1 cut(s) | 1133 |
| HinfI | GANTC | 7 cut(s) | 173, 362, 556, 586, 741, 956, 1024 |
| HpaII | CCGG | 1 cut(s) | 35 |
| HphI | GGTGA | 3 cut(s) | 358, 748, 1006 |
| Hpy166II | GTNNAC | 3 cut(s) | 316, 507, 621 |
| Hpy188I | TCNGA | 2 cut(s) | 591, 910 |
| Hpy188III | TCNNGA | 5 cut(s) | 35, 397, 439, 773, 1139 |
| Hpy8I | GTNNAC | 3 cut(s) | 316, 507, 621 |
| Hpy99I | CGWCG | 1 cut(s) | 1244 |
| HpyAV | CCTTC | 8 cut(s) | 32, 343, 586, 838, 922, 1072, 1116, 1120 |
| HpyCH4III | ACNGT | 1 cut(s) | 662 |
| HpyCH4IV | ACGT | 1 cut(s) | 853 |
| HpyCH4V | TGCA | 8 cut(s) | 6, 45, 164, 374, 472, 704, 1096, 1202 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 71, 982, 1141, 1220 |
| HpyF3I | CTNAG | 5 cut(s) | 51, 483, 864, 1086, 1215 |
| HpySE526I | ACGT | 1 cut(s) | 853 |
| Hsp92II | CATG | 5 cut(s) | 142, 262, 331, 992, 1142 |
| HspAI | GCGC | 1 cut(s) | 490 |
| KflI | GGGWCCC | 1 cut(s) | 1065 |
| Kpn2I | TCCGGA | 1 cut(s) | 34 |
| Kzo9I | GATC | 5 cut(s) | 418, 496, 610, 781, 914 |
| LmnI | GCTCC | 3 cut(s) | 262, 532, 685 |
| LpnPI | CCDG | 7 cut(s) | 48, 144, 185, 393, 723, 758, 1188 |
| Lsp1109I | GCAGC | 2 cut(s) | 176, 963 |
| LweI | GCATC | 3 cut(s) | 40, 129, 815 |
| MaeI | CTAG | 2 cut(s) | 413, 819 |
| MaeII | ACGT | 1 cut(s) | 853 |
| MaeIII | GTNAC | 6 cut(s) | 56, 386, 452, 994, 1002, 1235 |
| MalI | GATC | 5 cut(s) | 420, 498, 612, 783, 916 |
| MboI | GATC | 5 cut(s) | 418, 496, 610, 781, 914 |
| MboII | GAAGA | 8 cut(s) | 80, 283, 491, 841, 844, 880, 895, 1048 |
| MfeI | CAATTG | 1 cut(s) | 960 |
| MflI | RGATCY | 1 cut(s) | 914 |
| MluCI | AATT | 5 cut(s) | 191, 233, 631, 960, 1294 |
| MlyI | GAGTC | 2 cut(s) | 182, 750 |
| MmeI | TCCRAC | 1 cut(s) | 1188 |
| MnlI | CCTC | 9 cut(s) | 64, 166, 267, 348, 399, 404, 1185, 1204, 1265 |
| MroI | TCCGGA | 1 cut(s) | 34 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1134 |
| MseI | TTAA | 3 cut(s) | 567, 1053, 1299 |
| MspA1I | CMGCKG | 1 cut(s) | 167 |
| MspI | CCGG | 1 cut(s) | 35 |
| MunI | CAATTG | 1 cut(s) | 960 |
| MvnI | CGCG | 1 cut(s) | 492 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 71, 982, 1141, 1220 |
| NdeII | GATC | 5 cut(s) | 418, 496, 610, 781, 914 |
| NheI | GCTAGC | 1 cut(s) | 412 |
| NlaIII | CATG | 5 cut(s) | 142, 262, 331, 992, 1142 |
| NlaIV | GGNNCC | 3 cut(s) | 791, 1066, 1067 |
| NmuCI | GTSAC | 4 cut(s) | 386, 994, 1002, 1235 |
| NspI | RCATGY | 1 cut(s) | 992 |
| PaeR7I | CTCGAG | 1 cut(s) | 395 |
| PagI | TCATGA | 1 cut(s) | 1138 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 663 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1134 |
| PfeI | GAWTC | 5 cut(s) | 362, 556, 586, 956, 1024 |
| PflFI | GACNNNGTC | 2 cut(s) | 838, 1000 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1263 |
| PkrI | GCNGC | 4 cut(s) | 166, 805, 978, 1157 |
| PleI | GAGTC | 2 cut(s) | 181, 749 |
| PpsI | GAGTC | 2 cut(s) | 181, 749 |
| PpuMI | RGGWCCY | 1 cut(s) | 1065 |
| PshAI | GACNNNNGTC | 1 cut(s) | 543 |
| PsiI | TTATAA | 1 cut(s) | 699 |
| Psp1406I | AACGTT | 1 cut(s) | 853 |
| Psp5II | RGGWCCY | 1 cut(s) | 1065 |
| PspEI | GGTNACC | 1 cut(s) | 452 |
| PspN4I | GGNNCC | 3 cut(s) | 791, 1066, 1067 |
| PspPI | GGNCC | 2 cut(s) | 1065, 1254 |
| PspPPI | RGGWCCY | 1 cut(s) | 1065 |
| PstNI | CAGNNNCTG | 1 cut(s) | 710 |
| PsuI | RGATCY | 1 cut(s) | 914 |
| PsyI | GACNNNGTC | 2 cut(s) | 838, 1000 |
| PvuII | CAGCTG | 1 cut(s) | 167 |
| RsaI | GTAC | 1 cut(s) | 290 |
| RsaNI | GTAC | 1 cut(s) | 289 |
| SalI | GTCGAC | 1 cut(s) | 505 |
| SaqAI | TTAA | 3 cut(s) | 567, 1053, 1299 |
| SatI | GCNGC | 4 cut(s) | 165, 804, 977, 1156 |
| Sau3AI | GATC | 5 cut(s) | 418, 496, 610, 781, 914 |
| Sau96I | GGNCC | 2 cut(s) | 1065, 1254 |
| SchI | GAGTC | 2 cut(s) | 182, 750 |
| SfaNI | GCATC | 3 cut(s) | 40, 129, 815 |
| SfcI | CTRYAG | 1 cut(s) | 711 |
| Sfr274I | CTCGAG | 1 cut(s) | 395 |
| SinI | GGWCC | 1 cut(s) | 1065 |
| SlaI | CTCGAG | 1 cut(s) | 395 |
| SmlI | CTYRAG | 1 cut(s) | 395 |
| SmoI | CTYRAG | 1 cut(s) | 395 |
| Sse9I | AATT | 5 cut(s) | 191, 233, 631, 960, 1294 |
| SsiI | CCGC | 3 cut(s) | 803, 992, 1156 |
| SspI | AATATT | 1 cut(s) | 693 |
| SspMI | CTAG | 2 cut(s) | 413, 819 |
| TaaI | ACNGT | 1 cut(s) | 662 |
| TaiI | ACGT | 1 cut(s) | 856 |
| TaqI | TCGA | 4 cut(s) | 396, 506, 827, 842 |
| TaqII | GACCGA | 1 cut(s) | 492 |
| TasI | AATT | 5 cut(s) | 191, 233, 631, 960, 1294 |
| TatI | WGTACW | 1 cut(s) | 288 |
| TauI | GCSGC | 2 cut(s) | 806, 1158 |
| TfiI | GAWTC | 5 cut(s) | 362, 556, 586, 956, 1024 |
| Tru1I | TTAA | 3 cut(s) | 567, 1053, 1299 |
| Tru9I | TTAA | 3 cut(s) | 567, 1053, 1299 |
| TscAI | CASTG | 2 cut(s) | 232, 523 |
| TseFI | GTSAC | 4 cut(s) | 386, 994, 1002, 1235 |
| TseI | GCWGC | 2 cut(s) | 164, 976 |
| Tsp45I | GTSAC | 4 cut(s) | 386, 994, 1002, 1235 |
| TspDTI | ATGAA | 4 cut(s) | 246, 315, 447, 1127 |
| TspGWI | ACGGA | 1 cut(s) | 1242 |
| TspRI | CASTG | 2 cut(s) | 232, 523 |
| Tth111I | GACNNNGTC | 2 cut(s) | 838, 1000 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1263 |
| VpaK11BI | GGWCC | 1 cut(s) | 1065 |
| XapI | RAATTY | 2 cut(s) | 191, 233 |
| XceI | RCATGY | 1 cut(s) | 992 |
| XhoI | CTCGAG | 1 cut(s) | 395 |
| XmiI | GTMKAC | 1 cut(s) | 506 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1134 |
| XspI | CTAG | 2 cut(s) | 413, 819 |