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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 3 cut(s) | 828, 1811, 1910 |
| AatII | GACGTC | 1 cut(s) | 1170 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1103 |
| AciI | CCGC | 1 cut(s) | 2195 |
| AclWI | GGATC | 4 cut(s) | 83, 1717, 2042, 2055 |
| AcoI | YGGCCR | 2 cut(s) | 761, 857 |
| AcsI | RAATTY | 4 cut(s) | 320, 562, 913, 1367 |
| AcuI | CTGAAG | 4 cut(s) | 276, 1551, 1725, 1740 |
| AcyI | GRCGYC | 1 cut(s) | 1167 |
| AdeI | CACNNNGTG | 1 cut(s) | 119 |
| AfaI | GTAC | 5 cut(s) | 133, 317, 422, 1593, 1671 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 813, 1103, 2141 |
| AflII | CTTAAG | 1 cut(s) | 1463 |
| AflIII | ACRYGT | 1 cut(s) | 1938 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1644 |
| AjnI | CCWGG | 4 cut(s) | 91, 271, 937, 952 |
| AluBI | AGCT | 6 cut(s) | 329, 927, 1006, 1067, 1115, 1324 |
| AluI | AGCT | 6 cut(s) | 329, 927, 1006, 1067, 1115, 1324 |
| Alw21I | GWGCWC | 3 cut(s) | 115, 519, 1699 |
| Alw26I | GTCTC | 2 cut(s) | 1473, 1852 |
| Alw44I | GTGCAC | 1 cut(s) | 111 |
| AlwI | GGATC | 4 cut(s) | 83, 1717, 2042, 2055 |
| AoxI | GGCC | 5 cut(s) | 337, 761, 857, 940, 1772 |
| ApaLI | GTGCAC | 1 cut(s) | 111 |
| ApeKI | GCWGC | 4 cut(s) | 329, 367, 492, 1413 |
| ApoI | RAATTY | 4 cut(s) | 320, 562, 913, 1367 |
| AspLEI | GCGC | 1 cut(s) | 612 |
| AspS9I | GGNCC | 4 cut(s) | 570, 604, 941, 1772 |
| AsuHPI | GGTGA | 3 cut(s) | 131, 677, 2002 |
| AvaII | GGWCC | 2 cut(s) | 570, 604 |
| BaeGI | GKGCMC | 1 cut(s) | 115 |
| BalI | TGGCCA | 2 cut(s) | 763, 859 |
| BamHI | GGATCC | 1 cut(s) | 2047 |
| BbsI | GAAGAC | 1 cut(s) | 1825 |
| Bbv12I | GWGCWC | 3 cut(s) | 115, 519, 1699 |
| BbvI | GCAGC | 4 cut(s) | 316, 354, 479, 1425 |
| BccI | CCATC | 6 cut(s) | 698, 806, 1276, 1336, 1397, 1485 |
| BceAI | ACGGC | 2 cut(s) | 97, 1132 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1438, 1472 |
| BciT130I | CCWGG | 4 cut(s) | 93, 273, 939, 954 |
| BciVI | GTATCC | 1 cut(s) | 89 |
| BclI | TGATCA | 1 cut(s) | 751 |
| BcoDI | GTCTC | 2 cut(s) | 1473, 1852 |
| BfaI | CTAG | 8 cut(s) | 803, 1112, 1163, 1274, 1595, 1776, 2091, 2109 |
| BfmI | CTRYAG | 1 cut(s) | 621 |
| BfrI | CTTAAG | 1 cut(s) | 1463 |
| BfuI | GTATCC | 1 cut(s) | 89 |
| BglII | AGATCT | 1 cut(s) | 1261 |
| BisI | GCNGC | 4 cut(s) | 330, 368, 493, 1414 |
| BlsI | GCNGC | 4 cut(s) | 331, 369, 494, 1415 |
| BmcAI | AGTACT | 1 cut(s) | 1593 |
| Bme1390I | CCNGG | 4 cut(s) | 93, 273, 939, 954 |
| Bme18I | GGWCC | 2 cut(s) | 570, 604 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1644 |
| BmgT120I | GGNCC | 4 cut(s) | 570, 604, 941, 1772 |
| BmiI | GGNNCC | 4 cut(s) | 981, 1397, 2049, 2133 |
| BmrFI | CCNGG | 4 cut(s) | 93, 273, 939, 954 |
| BmsI | GCATC | 7 cut(s) | 115, 489, 532, 702, 1024, 1828, 2072 |
| BpiI | GAAGAC | 1 cut(s) | 1825 |
| BpmI | CTGGAG | 2 cut(s) | 998, 1286 |
| Bpu10I | CCTNAGC | 1 cut(s) | 35 |
| BpuEI | CTTGAG | 1 cut(s) | 811 |
| BsaBI | GATNNNNATC | 2 cut(s) | 972, 1714 |
| BsaHI | GRCGYC | 1 cut(s) | 1167 |
| BsaJI | CCNNGG | 3 cut(s) | 272, 629, 953 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 813, 1103, 2141 |
| Bse1I | ACTGG | 3 cut(s) | 722, 860, 1804 |
| Bse3DI | GCAATG | 1 cut(s) | 1794 |
| Bse8I | GATNNNNATC | 2 cut(s) | 972, 1714 |
| BseBI | CCWGG | 4 cut(s) | 93, 273, 939, 954 |
| BseDI | CCNNGG | 3 cut(s) | 272, 629, 953 |
| BseGI | GGATG | 2 cut(s) | 648, 718 |
| BseJI | GATNNNNATC | 2 cut(s) | 972, 1714 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 813, 1103, 2141 |
| BseMI | GCAATG | 1 cut(s) | 1794 |
| BseNI | ACTGG | 3 cut(s) | 722, 860, 1804 |
| BseRI | GAGGAG | 3 cut(s) | 263, 2015, 2124 |
| BseSI | GKGCMC | 1 cut(s) | 115 |
| BseXI | GCAGC | 4 cut(s) | 316, 354, 479, 1425 |
| BshFI | GGCC | 5 cut(s) | 339, 763, 859, 942, 1774 |
| BsiHKAI | GWGCWC | 3 cut(s) | 115, 519, 1699 |
| BslFI | GGGAC | 3 cut(s) | 516, 1237, 2177 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 813, 1103, 2141 |
| BsmAI | GTCTC | 2 cut(s) | 1473, 1852 |
| BsmFI | GGGAC | 3 cut(s) | 516, 1237, 2177 |
| BsnI | GGCC | 5 cut(s) | 339, 763, 859, 942, 1774 |
| Bsp1286I | GDGCHC | 3 cut(s) | 115, 519, 1699 |
| Bsp1407I | TGTACA | 2 cut(s) | 315, 420 |
| Bsp143I | GATC | 7 cut(s) | 88, 166, 751, 1261, 1629, 1709, 2047 |
| BspACI | CCGC | 1 cut(s) | 2195 |
| BspANI | GGCC | 5 cut(s) | 339, 763, 859, 942, 1774 |
| BspHI | TCATGA | 3 cut(s) | 1471, 2026, 2149 |
| BspLI | GGNNCC | 4 cut(s) | 981, 1397, 2049, 2133 |
| BspPI | GGATC | 4 cut(s) | 83, 1717, 2042, 2055 |
| BspTI | CTTAAG | 1 cut(s) | 1463 |
| BsrDI | GCAATG | 1 cut(s) | 1794 |
| BsrGI | TGTACA | 2 cut(s) | 315, 420 |
| BsrI | ACTGG | 3 cut(s) | 722, 860, 1804 |
| BssECI | CCNNGG | 3 cut(s) | 272, 629, 953 |
| BssMI | GATC | 7 cut(s) | 88, 166, 751, 1261, 1629, 1709, 2047 |
| BssNI | GRCGYC | 1 cut(s) | 1167 |
| BssT1I | CCWWGG | 1 cut(s) | 629 |
| Bst2UI | CCWGG | 4 cut(s) | 93, 273, 939, 954 |
| Bst4CI | ACNGT | 2 cut(s) | 698, 1497 |
| Bst6I | CTCTTC | 2 cut(s) | 222, 1608 |
| BstACI | GRCGYC | 1 cut(s) | 1167 |
| BstAFI | CTTAAG | 1 cut(s) | 1463 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 2069 |
| BstAUI | TGTACA | 2 cut(s) | 315, 420 |
| BstC8I | GCNNGC | 2 cut(s) | 478, 765 |
| BstDEI | CTNAG | 5 cut(s) | 35, 836, 1538, 1927, 2014 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 2139 |
| BstF5I | GGATG | 2 cut(s) | 648, 718 |
| BstHHI | GCGC | 1 cut(s) | 612 |
| BstKTI | GATC | 7 cut(s) | 91, 169, 754, 1264, 1632, 1712, 2050 |
| BstMAI | GTCTC | 2 cut(s) | 1473, 1852 |
| BstMBI | GATC | 7 cut(s) | 88, 166, 751, 1261, 1629, 1709, 2047 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 2069 |
| BstNI | CCWGG | 4 cut(s) | 93, 273, 939, 954 |
| BstNSI | RCATGY | 4 cut(s) | 388, 480, 904, 2072 |
| BstSCI | CCNGG | 4 cut(s) | 91, 271, 937, 952 |
| BstSFI | CTRYAG | 1 cut(s) | 621 |
| BstSLI | GKGCMC | 1 cut(s) | 115 |
| BstV1I | GCAGC | 4 cut(s) | 316, 354, 479, 1425 |
| BstV2I | GAAGAC | 1 cut(s) | 1825 |
| BstX2I | RGATCY | 3 cut(s) | 1261, 1709, 2047 |
| BstYI | RGATCY | 3 cut(s) | 1261, 1709, 2047 |
| BsuI | GTATCC | 1 cut(s) | 89 |
| BsuRI | GGCC | 5 cut(s) | 339, 763, 859, 942, 1774 |
| BtsCI | GGATG | 2 cut(s) | 648, 718 |
| BtsIMutI | CAGTG | 2 cut(s) | 807, 1967 |
| Cac8I | GCNNGC | 2 cut(s) | 478, 765 |
| CciI | TCATGA | 3 cut(s) | 1471, 2026, 2149 |
| CfoI | GCGC | 1 cut(s) | 612 |
| Cfr13I | GGNCC | 4 cut(s) | 570, 604, 941, 1772 |
| CseI | GACGC | 2 cut(s) | 704, 1830 |
| Csp6I | GTAC | 5 cut(s) | 132, 316, 421, 1592, 1670 |
| CviQI | GTAC | 5 cut(s) | 132, 316, 421, 1592, 1670 |
| DdeI | CTNAG | 5 cut(s) | 35, 836, 1538, 1927, 2014 |
| DpnI | GATC | 7 cut(s) | 90, 168, 753, 1263, 1631, 1711, 2049 |
| DpnII | GATC | 7 cut(s) | 88, 166, 751, 1261, 1629, 1709, 2047 |
| DraI | TTTAAA | 1 cut(s) | 2037 |
| DraIII | CACNNNGTG | 1 cut(s) | 119 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1644 |
| EaeI | YGGCCR | 2 cut(s) | 761, 857 |
| Eam1104I | CTCTTC | 2 cut(s) | 222, 1608 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1644 |
| EarI | CTCTTC | 2 cut(s) | 222, 1608 |
| Eco130I | CCWWGG | 1 cut(s) | 629 |
| Eco47I | GGWCC | 2 cut(s) | 570, 604 |
| Eco57I | CTGAAG | 4 cut(s) | 276, 1551, 1725, 1740 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 2139 |
| EcoO109I | RGGNCCY | 2 cut(s) | 604, 1772 |
| EcoRII | CCWGG | 4 cut(s) | 91, 271, 937, 952 |
| EcoT14I | CCWWGG | 1 cut(s) | 629 |
| EcoT22I | ATGCAT | 4 cut(s) | 478, 482, 1039, 1176 |
| ErhI | CCWWGG | 1 cut(s) | 629 |
| FaqI | GGGAC | 3 cut(s) | 516, 1237, 2177 |
| FauI | CCCGC | 1 cut(s) | 2202 |
| FauNDI | CATATG | 2 cut(s) | 1102, 2188 |
| FbaI | TGATCA | 1 cut(s) | 751 |
| Fnu4HI | GCNGC | 4 cut(s) | 330, 368, 493, 1414 |
| FokI | GGATG | 2 cut(s) | 655, 705 |
| Fsp4HI | GCNGC | 4 cut(s) | 330, 368, 493, 1414 |
| FspBI | CTAG | 8 cut(s) | 803, 1112, 1163, 1274, 1595, 1776, 2091, 2109 |
| GlaI | GCGC | 1 cut(s) | 611 |
| GluI | GCNGC | 4 cut(s) | 330, 368, 493, 1414 |
| GsuI | CTGGAG | 2 cut(s) | 998, 1286 |
| HaeIII | GGCC | 5 cut(s) | 339, 763, 859, 942, 1774 |
| HgaI | GACGC | 2 cut(s) | 704, 1830 |
| HhaI | GCGC | 1 cut(s) | 612 |
| Hin1I | GRCGYC | 1 cut(s) | 1167 |
| Hin6I | GCGC | 1 cut(s) | 610 |
| HinP1I | GCGC | 1 cut(s) | 610 |
| HincII | GTYRAC | 3 cut(s) | 675, 727, 2020 |
| HindII | GTYRAC | 3 cut(s) | 675, 727, 2020 |
| HindIII | AAGCTT | 1 cut(s) | 925 |
| HinfI | GANTC | 6 cut(s) | 413, 469, 634, 728, 1250, 1690 |
| HpaI | GTTAAC | 2 cut(s) | 675, 2020 |
| HphI | GGTGA | 3 cut(s) | 131, 677, 2002 |
| Hpy166II | GTNNAC | 7 cut(s) | 113, 423, 675, 727, 1080, 2010, 2020 |
| Hpy188I | TCNGA | 6 cut(s) | 166, 503, 778, 910, 1720, 1747 |
| Hpy8I | GTNNAC | 7 cut(s) | 113, 423, 675, 727, 1080, 2010, 2020 |
| HpyAV | CCTTC | 6 cut(s) | 1526, 1660, 1700, 2024, 2033, 2122 |
| HpyCH4III | ACNGT | 2 cut(s) | 698, 1497 |
| HpyCH4IV | ACGT | 3 cut(s) | 1153, 1167, 1940 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 2069 |
| HpyF3I | CTNAG | 5 cut(s) | 35, 836, 1538, 1927, 2014 |
| HpySE526I | ACGT | 3 cut(s) | 1153, 1167, 1940 |
| Hsp92I | GRCGYC | 1 cut(s) | 1167 |
| HspAI | GCGC | 1 cut(s) | 610 |
| Ksp22I | TGATCA | 1 cut(s) | 751 |
| KspAI | GTTAAC | 2 cut(s) | 675, 2020 |
| Kzo9I | GATC | 7 cut(s) | 88, 166, 751, 1261, 1629, 1709, 2047 |
| LmnI | GCTCC | 3 cut(s) | 979, 1003, 2137 |
| Lsp1109I | GCAGC | 4 cut(s) | 316, 354, 479, 1425 |
| LweI | GCATC | 7 cut(s) | 115, 489, 532, 702, 1024, 1828, 2072 |
| MaeI | CTAG | 8 cut(s) | 803, 1112, 1163, 1274, 1595, 1776, 2091, 2109 |
| MaeII | ACGT | 3 cut(s) | 1153, 1167, 1940 |
| MaeIII | GTNAC | 4 cut(s) | 1149, 1154, 1269, 1729 |
| MalI | GATC | 7 cut(s) | 90, 168, 753, 1263, 1631, 1711, 2049 |
| MboI | GATC | 7 cut(s) | 88, 166, 751, 1261, 1629, 1709, 2047 |
| MboII | GAAGA | 9 cut(s) | 134, 161, 239, 478, 1298, 1313, 1625, 1634, 1830 |
| MfeI | CAATTG | 1 cut(s) | 2224 |
| MflI | RGATCY | 3 cut(s) | 1261, 1709, 2047 |
| MhlI | GDGCHC | 3 cut(s) | 115, 519, 1699 |
| MlsI | TGGCCA | 2 cut(s) | 763, 859 |
| MluNI | TGGCCA | 2 cut(s) | 763, 859 |
| MlyI | GAGTC | 2 cut(s) | 722, 1259 |
| MmeI | TCCRAC | 3 cut(s) | 1590, 1599, 1632 |
| Mox20I | TGGCCA | 2 cut(s) | 763, 859 |
| Mph1103I | ATGCAT | 4 cut(s) | 478, 482, 1039, 1176 |
| MscI | TGGCCA | 2 cut(s) | 763, 859 |
| MslI | CAYNNNNRTG | 2 cut(s) | 174, 1739 |
| Msp20I | TGGCCA | 2 cut(s) | 763, 859 |
| MspCI | CTTAAG | 1 cut(s) | 1463 |
| MspR9I | CCNGG | 4 cut(s) | 93, 273, 939, 954 |
| MunI | CAATTG | 1 cut(s) | 2224 |
| MvaI | CCWGG | 4 cut(s) | 93, 273, 939, 954 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 2069 |
| NdeI | CATATG | 2 cut(s) | 1102, 2188 |
| NdeII | GATC | 7 cut(s) | 88, 166, 751, 1261, 1629, 1709, 2047 |
| NlaIV | GGNNCC | 4 cut(s) | 981, 1397, 2049, 2133 |
| NmuCI | GTSAC | 1 cut(s) | 1154 |
| NsiI | ATGCAT | 4 cut(s) | 478, 482, 1039, 1176 |
| NspI | RCATGY | 4 cut(s) | 388, 480, 904, 2072 |
| PaeI | GCATGC | 1 cut(s) | 480 |
| PagI | TCATGA | 3 cut(s) | 1471, 2026, 2149 |
| PfeI | GAWTC | 4 cut(s) | 413, 469, 634, 1690 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1103 |
| PfoI | TCCNGGA | 1 cut(s) | 91 |
| PkrI | GCNGC | 4 cut(s) | 331, 369, 494, 1415 |
| PleI | GAGTC | 2 cut(s) | 722, 1258 |
| PpsI | GAGTC | 2 cut(s) | 722, 1258 |
| PpuMI | RGGWCCY | 1 cut(s) | 604 |
| PsiI | TTATAA | 3 cut(s) | 828, 1811, 1910 |
| Psp5II | RGGWCCY | 1 cut(s) | 604 |
| Psp6I | CCWGG | 4 cut(s) | 91, 271, 937, 952 |
| PspGI | CCWGG | 4 cut(s) | 91, 271, 937, 952 |
| PspN4I | GGNNCC | 4 cut(s) | 981, 1397, 2049, 2133 |
| PspPI | GGNCC | 4 cut(s) | 570, 604, 941, 1772 |
| PspPPI | RGGWCCY | 1 cut(s) | 604 |
| PsuI | RGATCY | 3 cut(s) | 1261, 1709, 2047 |
| RsaI | GTAC | 5 cut(s) | 133, 317, 422, 1593, 1671 |
| RsaNI | GTAC | 5 cut(s) | 132, 316, 421, 1592, 1670 |
| RseI | CAYNNNNRTG | 2 cut(s) | 174, 1739 |
| SatI | GCNGC | 4 cut(s) | 330, 368, 493, 1414 |
| Sau3AI | GATC | 7 cut(s) | 88, 166, 751, 1261, 1629, 1709, 2047 |
| Sau96I | GGNCC | 4 cut(s) | 570, 604, 941, 1772 |
| ScaI | AGTACT | 1 cut(s) | 1593 |
| SchI | GAGTC | 2 cut(s) | 722, 1259 |
| ScrFI | CCNGG | 4 cut(s) | 93, 273, 939, 954 |
| SduI | GDGCHC | 3 cut(s) | 115, 519, 1699 |
| SfaNI | GCATC | 7 cut(s) | 115, 489, 532, 702, 1024, 1828, 2072 |
| SfcI | CTRYAG | 1 cut(s) | 621 |
| SinI | GGWCC | 2 cut(s) | 570, 604 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 174, 1739 |
| SmlI | CTYRAG | 2 cut(s) | 790, 1463 |
| SmoI | CTYRAG | 2 cut(s) | 790, 1463 |
| SphI | GCATGC | 1 cut(s) | 480 |
| SsiI | CCGC | 1 cut(s) | 2195 |
| SspI | AATATT | 2 cut(s) | 1420, 1551 |
| SspMI | CTAG | 8 cut(s) | 803, 1112, 1163, 1274, 1595, 1776, 2091, 2109 |
| StyD4I | CCNGG | 4 cut(s) | 91, 271, 937, 952 |
| StyI | CCWWGG | 1 cut(s) | 629 |
| TaaI | ACNGT | 2 cut(s) | 698, 1497 |
| TaiI | ACGT | 3 cut(s) | 1156, 1170, 1943 |
| TaqI | TCGA | 2 cut(s) | 548, 1699 |
| TaqII | GACCGA | 1 cut(s) | 1448 |
| TatI | WGTACW | 4 cut(s) | 131, 315, 420, 1591 |
| TfiI | GAWTC | 4 cut(s) | 413, 469, 634, 1690 |
| TscAI | CASTG | 2 cut(s) | 814, 1967 |
| TseFI | GTSAC | 1 cut(s) | 1154 |
| TseI | GCWGC | 4 cut(s) | 329, 367, 492, 1413 |
| Tsp45I | GTSAC | 1 cut(s) | 1154 |
| TspDTI | ATGAA | 9 cut(s) | 191, 201, 375, 461, 1679, 2015, 2043, 2044, 2138 |
| TspGWI | ACGGA | 1 cut(s) | 583 |
| TspRI | CASTG | 2 cut(s) | 814, 1967 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1103 |
| Vha464I | CTTAAG | 1 cut(s) | 1463 |
| VneI | GTGCAC | 1 cut(s) | 111 |
| VpaK11BI | GGWCC | 2 cut(s) | 570, 604 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 2139 |
| XapI | RAATTY | 4 cut(s) | 320, 562, 913, 1367 |
| XbaI | TCTAGA | 2 cut(s) | 1162, 2090 |
| XceI | RCATGY | 4 cut(s) | 388, 480, 904, 2072 |
| XspI | CTAG | 8 cut(s) | 803, 1112, 1163, 1274, 1595, 1776, 2091, 2109 |
| ZraI | GACGTC | 1 cut(s) | 1168 |
| ZrmI | AGTACT | 1 cut(s) | 1593 |
| Zsp2I | ATGCAT | 4 cut(s) | 478, 482, 1039, 1176 |