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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 1 cut(s) | 115 |
| AcsI | RAATTY | 1 cut(s) | 308 |
| AfeI | AGCGCT | 1 cut(s) | 53 |
| AflII | CTTAAG | 1 cut(s) | 194 |
| AgeI | ACCGGT | 1 cut(s) | 265 |
| AgsI | TTSAA | 2 cut(s) | 147, 168 |
| AluBI | AGCT | 3 cut(s) | 19, 69, 229 |
| AluI | AGCT | 3 cut(s) | 19, 69, 229 |
| AlwI | GGATC | 1 cut(s) | 115 |
| Aor51HI | AGCGCT | 1 cut(s) | 53 |
| ApeKI | GCWGC | 2 cut(s) | 19, 314 |
| ApoI | RAATTY | 1 cut(s) | 308 |
| AsiGI | ACCGGT | 1 cut(s) | 265 |
| AspLEI | GCGC | 1 cut(s) | 54 |
| AspS9I | GGNCC | 1 cut(s) | 38 |
| AvaII | GGWCC | 1 cut(s) | 38 |
| BbvI | GCAGC | 1 cut(s) | 6 |
| BccI | CCATC | 1 cut(s) | 29 |
| BfaI | CTAG | 1 cut(s) | 32 |
| BfmI | CTRYAG | 1 cut(s) | 323 |
| BfoI | RGCGCY | 1 cut(s) | 55 |
| BfrI | CTTAAG | 1 cut(s) | 194 |
| BisI | GCNGC | 2 cut(s) | 20, 315 |
| BlsI | GCNGC | 2 cut(s) | 21, 316 |
| Bme18I | GGWCC | 1 cut(s) | 38 |
| BmgT120I | GGNCC | 1 cut(s) | 38 |
| BmiI | GGNNCC | 2 cut(s) | 74, 129 |
| BoxI | GACNNNNGTC | 1 cut(s) | 196 |
| BsaJI | CCNNGG | 1 cut(s) | 247 |
| BsaWI | WCCGGW | 2 cut(s) | 188, 265 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 216, 246 |
| Bse118I | RCCGGY | 1 cut(s) | 265 |
| BseDI | CCNNGG | 1 cut(s) | 247 |
| BseGI | GGATG | 1 cut(s) | 178 |
| BseXI | GCAGC | 1 cut(s) | 6 |
| BsgI | GTGCAG | 1 cut(s) | 5 |
| BshTI | ACCGGT | 1 cut(s) | 265 |
| BsiSI | CCGG | 2 cut(s) | 189, 266 |
| BslFI | GGGAC | 1 cut(s) | 184 |
| BsmFI | GGGAC | 1 cut(s) | 184 |
| Bsp143I | GATC | 1 cut(s) | 107 |
| BspLI | GGNNCC | 2 cut(s) | 74, 129 |
| BspPI | GGATC | 1 cut(s) | 115 |
| BspTI | CTTAAG | 1 cut(s) | 194 |
| BsrFI | RCCGGY | 1 cut(s) | 265 |
| BssAI | RCCGGY | 1 cut(s) | 265 |
| BssECI | CCNNGG | 1 cut(s) | 247 |
| BssMI | GATC | 1 cut(s) | 107 |
| Bst4CI | ACNGT | 1 cut(s) | 82 |
| BstAFI | CTTAAG | 1 cut(s) | 194 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 19 |
| BstC8I | GCNNGC | 2 cut(s) | 56, 67 |
| BstF5I | GGATG | 1 cut(s) | 178 |
| BstH2I | RGCGCY | 1 cut(s) | 55 |
| BstHHI | GCGC | 1 cut(s) | 54 |
| BstKTI | GATC | 1 cut(s) | 110 |
| BstMBI | GATC | 1 cut(s) | 107 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 19 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 196 |
| BstSFI | CTRYAG | 1 cut(s) | 323 |
| BstV1I | GCAGC | 1 cut(s) | 6 |
| BtsCI | GGATG | 1 cut(s) | 178 |
| Cac8I | GCNNGC | 2 cut(s) | 56, 67 |
| CfoI | GCGC | 1 cut(s) | 54 |
| Cfr10I | RCCGGY | 1 cut(s) | 265 |
| Cfr13I | GGNCC | 1 cut(s) | 38 |
| CspAI | ACCGGT | 1 cut(s) | 265 |
| CviAII | CATG | 4 cut(s) | 116, 121, 203, 212 |
| CviJI | RGCY | 6 cut(s) | 19, 69, 159, 184, 229, 289 |
| CviKI_1 | RGCY | 6 cut(s) | 19, 69, 159, 184, 229, 289 |
| DpnI | GATC | 1 cut(s) | 109 |
| DpnII | GATC | 1 cut(s) | 107 |
| Eco47I | GGWCC | 1 cut(s) | 38 |
| Eco47III | AGCGCT | 1 cut(s) | 53 |
| FaeI | CATG | 4 cut(s) | 119, 124, 206, 215 |
| FaiI | YATR | 7 cut(s) | 8, 101, 117, 122, 204, 213, 325 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 38, 70 |
| FaqI | GGGAC | 1 cut(s) | 184 |
| FatI | CATG | 4 cut(s) | 115, 120, 202, 211 |
| Fnu4HI | GCNGC | 2 cut(s) | 20, 315 |
| FokI | GGATG | 1 cut(s) | 185 |
| Fsp4HI | GCNGC | 2 cut(s) | 20, 315 |
| FspBI | CTAG | 1 cut(s) | 32 |
| GlaI | GCGC | 1 cut(s) | 53 |
| GluI | GCNGC | 2 cut(s) | 20, 315 |
| HaeII | RGCGCY | 1 cut(s) | 55 |
| HapII | CCGG | 2 cut(s) | 189, 266 |
| HhaI | GCGC | 1 cut(s) | 54 |
| Hin1II | CATG | 4 cut(s) | 119, 124, 206, 215 |
| Hin6I | GCGC | 1 cut(s) | 52 |
| HinP1I | GCGC | 1 cut(s) | 52 |
| HpaII | CCGG | 2 cut(s) | 189, 266 |
| Hpy188I | TCNGA | 3 cut(s) | 42, 248, 272 |
| Hpy188III | TCNNGA | 2 cut(s) | 32, 131 |
| HpyAV | CCTTC | 1 cut(s) | 118 |
| HpyCH4III | ACNGT | 1 cut(s) | 82 |
| HpyCH4V | TGCA | 4 cut(s) | 22, 223, 278, 314 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 19 |
| Hsp92II | CATG | 4 cut(s) | 119, 124, 206, 215 |
| HspAI | GCGC | 1 cut(s) | 52 |
| Kzo9I | GATC | 1 cut(s) | 107 |
| LpnPI | CCDG | 5 cut(s) | 55, 144, 202, 271, 279 |
| Lsp1109I | GCAGC | 1 cut(s) | 6 |
| MaeI | CTAG | 1 cut(s) | 32 |
| MalI | GATC | 1 cut(s) | 109 |
| MboI | GATC | 1 cut(s) | 107 |
| MfeI | CAATTG | 1 cut(s) | 237 |
| MluCI | AATT | 2 cut(s) | 237, 308 |
| MmeI | TCCRAC | 1 cut(s) | 237 |
| MnlI | CCTC | 2 cut(s) | 174, 242 |
| MseI | TTAA | 3 cut(s) | 195, 218, 302 |
| MspA1I | CMGCKG | 1 cut(s) | 19 |
| MspCI | CTTAAG | 1 cut(s) | 194 |
| MspI | CCGG | 2 cut(s) | 189, 266 |
| MunI | CAATTG | 1 cut(s) | 237 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 19 |
| NdeII | GATC | 1 cut(s) | 107 |
| NlaIII | CATG | 4 cut(s) | 119, 124, 206, 215 |
| NlaIV | GGNNCC | 2 cut(s) | 74, 129 |
| PinAI | ACCGGT | 1 cut(s) | 265 |
| PkrI | GCNGC | 2 cut(s) | 21, 316 |
| PshAI | GACNNNNGTC | 1 cut(s) | 196 |
| PspN4I | GGNNCC | 2 cut(s) | 74, 129 |
| PspPI | GGNCC | 1 cut(s) | 38 |
| PvuII | CAGCTG | 1 cut(s) | 19 |
| SaqAI | TTAA | 3 cut(s) | 195, 218, 302 |
| SatI | GCNGC | 2 cut(s) | 20, 315 |
| Sau3AI | GATC | 1 cut(s) | 107 |
| Sau96I | GGNCC | 1 cut(s) | 38 |
| SetI | ASST | 5 cut(s) | 21, 71, 78, 129, 231 |
| SfcI | CTRYAG | 1 cut(s) | 323 |
| SinI | GGWCC | 1 cut(s) | 38 |
| SmlI | CTYRAG | 1 cut(s) | 194 |
| SmoI | CTYRAG | 1 cut(s) | 194 |
| Sse9I | AATT | 2 cut(s) | 237, 308 |
| SspMI | CTAG | 1 cut(s) | 32 |
| TaaI | ACNGT | 1 cut(s) | 82 |
| TaqI | TCGA | 1 cut(s) | 155 |
| TasI | AATT | 2 cut(s) | 237, 308 |
| Tru1I | TTAA | 3 cut(s) | 195, 218, 302 |
| Tru9I | TTAA | 3 cut(s) | 195, 218, 302 |
| TseI | GCWGC | 2 cut(s) | 19, 314 |
| TspDTI | ATGAA | 3 cut(s) | 104, 137, 320 |
| Vha464I | CTTAAG | 1 cut(s) | 194 |
| VpaK11BI | GGWCC | 1 cut(s) | 38 |
| XapI | RAATTY | 1 cut(s) | 308 |
| XbaI | TCTAGA | 1 cut(s) | 31 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 66 |
| XspI | CTAG | 1 cut(s) | 32 |