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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 371 |
| AccII | CGCG | 1 cut(s) | 419 |
| AciI | CCGC | 3 cut(s) | 310, 363, 419 |
| AclWI | GGATC | 3 cut(s) | 68, 81, 133 |
| AcoI | YGGCCR | 2 cut(s) | 68, 334 |
| AcuI | CTGAAG | 1 cut(s) | 249 |
| AcvI | CACGTG | 1 cut(s) | 66 |
| AfaI | GTAC | 2 cut(s) | 43, 409 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 97, 343, 369, 546 |
| AflIII | ACRYGT | 1 cut(s) | 63 |
| AgsI | TTSAA | 1 cut(s) | 461 |
| AluBI | AGCT | 1 cut(s) | 206 |
| AluI | AGCT | 1 cut(s) | 206 |
| Alw21I | GWGCWC | 1 cut(s) | 208 |
| Alw26I | GTCTC | 2 cut(s) | 168, 344 |
| AlwI | GGATC | 3 cut(s) | 68, 81, 133 |
| AoxI | GGCC | 4 cut(s) | 68, 334, 386, 506 |
| ApeKI | GCWGC | 2 cut(s) | 108, 401 |
| AspLEI | GCGC | 1 cut(s) | 419 |
| AspS9I | GGNCC | 2 cut(s) | 356, 387 |
| AsuC2I | CCSGG | 1 cut(s) | 432 |
| AsuHPI | GGTGA | 5 cut(s) | 31, 112, 280, 359, 416 |
| AvaII | GGWCC | 1 cut(s) | 356 |
| BamHI | GGATCC | 1 cut(s) | 73 |
| BanII | GRGCYC | 1 cut(s) | 208 |
| BauI | CACGAG | 2 cut(s) | 255, 515 |
| BbrPI | CACGTG | 1 cut(s) | 66 |
| Bbv12I | GWGCWC | 1 cut(s) | 208 |
| BbvI | GCAGC | 2 cut(s) | 95, 413 |
| BccI | CCATC | 3 cut(s) | 107, 175, 322 |
| BceAI | ACGGC | 3 cut(s) | 39, 121, 493 |
| BcnI | CCSGG | 1 cut(s) | 432 |
| BcoDI | GTCTC | 2 cut(s) | 168, 344 |
| BfaI | CTAG | 1 cut(s) | 78 |
| BfuAI | ACCTGC | 1 cut(s) | 371 |
| BglII | AGATCT | 1 cut(s) | 239 |
| BisI | GCNGC | 2 cut(s) | 109, 402 |
| BlsI | GCNGC | 2 cut(s) | 110, 403 |
| BmcAI | AGTACT | 1 cut(s) | 409 |
| Bme1390I | CCNGG | 1 cut(s) | 432 |
| Bme18I | GGWCC | 1 cut(s) | 356 |
| BmgT120I | GGNCC | 2 cut(s) | 356, 387 |
| BmiI | GGNNCC | 1 cut(s) | 75 |
| BmrFI | CCNGG | 1 cut(s) | 432 |
| BmrI | ACTGGG | 1 cut(s) | 487 |
| BmsI | GCATC | 1 cut(s) | 367 |
| BmuI | ACTGGG | 1 cut(s) | 487 |
| BpuMI | CCSGG | 1 cut(s) | 432 |
| BsaAI | YACGTR | 1 cut(s) | 66 |
| BsaJI | CCNNGG | 1 cut(s) | 15 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 343, 373 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 97, 343, 369, 546 |
| Bse118I | RCCGGY | 1 cut(s) | 546 |
| Bse1I | ACTGG | 3 cut(s) | 358, 415, 482 |
| BseDI | CCNNGG | 1 cut(s) | 15 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 97, 343, 369, 546 |
| BseMII | CTCAG | 1 cut(s) | 284 |
| BseNI | ACTGG | 3 cut(s) | 358, 415, 482 |
| BseXI | GCAGC | 2 cut(s) | 95, 413 |
| Bsh1236I | CGCG | 1 cut(s) | 419 |
| Bsh1285I | CGRYCG | 1 cut(s) | 436 |
| BshFI | GGCC | 4 cut(s) | 70, 336, 388, 508 |
| BsiEI | CGRYCG | 1 cut(s) | 436 |
| BsiHKAI | GWGCWC | 1 cut(s) | 208 |
| BsiSI | CCGG | 3 cut(s) | 71, 432, 547 |
| BslFI | GGGAC | 1 cut(s) | 74 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 97, 343, 369, 546 |
| BsmAI | GTCTC | 2 cut(s) | 168, 344 |
| BsmFI | GGGAC | 1 cut(s) | 74 |
| BsnI | GGCC | 4 cut(s) | 70, 336, 388, 508 |
| Bsp1286I | GDGCHC | 1 cut(s) | 208 |
| Bsp1407I | TGTACA | 1 cut(s) | 41 |
| Bsp143I | GATC | 4 cut(s) | 73, 125, 239, 270 |
| BspACI | CCGC | 3 cut(s) | 310, 363, 419 |
| BspANI | GGCC | 4 cut(s) | 70, 336, 388, 508 |
| BspCNI | CTCAG | 1 cut(s) | 285 |
| BspFNI | CGCG | 1 cut(s) | 419 |
| BspLI | GGNNCC | 1 cut(s) | 75 |
| BspMI | ACCTGC | 1 cut(s) | 371 |
| BspPI | GGATC | 3 cut(s) | 68, 81, 133 |
| BsrFI | RCCGGY | 1 cut(s) | 546 |
| BsrGI | TGTACA | 1 cut(s) | 41 |
| BsrI | ACTGG | 3 cut(s) | 358, 415, 482 |
| BssAI | RCCGGY | 1 cut(s) | 546 |
| BssECI | CCNNGG | 1 cut(s) | 15 |
| BssMI | GATC | 4 cut(s) | 73, 125, 239, 270 |
| BssSI | CACGAG | 2 cut(s) | 255, 515 |
| Bst2BI | CACGAG | 2 cut(s) | 255, 515 |
| Bst6I | CTCTTC | 2 cut(s) | 336, 456 |
| BstAUI | TGTACA | 1 cut(s) | 41 |
| BstBAI | YACGTR | 1 cut(s) | 66 |
| BstC8I | GCNNGC | 4 cut(s) | 28, 32, 334, 532 |
| BstDEI | CTNAG | 1 cut(s) | 293 |
| BstEII | GGTNACC | 2 cut(s) | 50, 422 |
| BstFNI | CGCG | 1 cut(s) | 419 |
| BstHHI | GCGC | 1 cut(s) | 419 |
| BstKTI | GATC | 4 cut(s) | 76, 128, 242, 273 |
| BstMAI | GTCTC | 2 cut(s) | 168, 344 |
| BstMBI | GATC | 4 cut(s) | 73, 125, 239, 270 |
| BstMCI | CGRYCG | 1 cut(s) | 436 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 371 |
| BstNSI | RCATGY | 1 cut(s) | 34 |
| BstPI | GGTNACC | 2 cut(s) | 50, 422 |
| BstSCI | CCNGG | 1 cut(s) | 430 |
| BstUI | CGCG | 1 cut(s) | 419 |
| BstV1I | GCAGC | 2 cut(s) | 95, 413 |
| BstX2I | RGATCY | 2 cut(s) | 73, 239 |
| BstYI | RGATCY | 2 cut(s) | 73, 239 |
| BsuRI | GGCC | 4 cut(s) | 70, 336, 388, 508 |
| BtgZI | GCGATG | 1 cut(s) | 126 |
| BveI | ACCTGC | 1 cut(s) | 371 |
| Cac8I | GCNNGC | 4 cut(s) | 28, 32, 334, 532 |
| CfoI | GCGC | 1 cut(s) | 419 |
| Cfr10I | RCCGGY | 1 cut(s) | 546 |
| Cfr13I | GGNCC | 2 cut(s) | 356, 387 |
| Csp6I | GTAC | 2 cut(s) | 42, 408 |
| CviAII | CATG | 5 cut(s) | 31, 86, 442, 560, 564 |
| CviJI | RGCY | 9 cut(s) | 26, 70, 108, 206, 332, 336, 374, 388, 508 |
| CviKI_1 | RGCY | 9 cut(s) | 26, 70, 108, 206, 332, 336, 374, 388, 508 |
| CviQI | GTAC | 2 cut(s) | 42, 408 |
| DdeI | CTNAG | 1 cut(s) | 293 |
| DpnI | GATC | 4 cut(s) | 75, 127, 241, 272 |
| DpnII | GATC | 4 cut(s) | 73, 125, 239, 270 |
| EaeI | YGGCCR | 2 cut(s) | 68, 334 |
| Eam1104I | CTCTTC | 2 cut(s) | 336, 456 |
| EarI | CTCTTC | 2 cut(s) | 336, 456 |
| Ecl136II | GAGCTC | 1 cut(s) | 206 |
| Eco24I | GRGCYC | 1 cut(s) | 208 |
| Eco47I | GGWCC | 1 cut(s) | 356 |
| Eco53kI | GAGCTC | 1 cut(s) | 206 |
| Eco57I | CTGAAG | 1 cut(s) | 249 |
| Eco72I | CACGTG | 1 cut(s) | 66 |
| Eco91I | GGTNACC | 2 cut(s) | 50, 422 |
| EcoICRI | GAGCTC | 1 cut(s) | 206 |
| EcoO109I | RGGNCCY | 1 cut(s) | 387 |
| EcoO65I | GGTNACC | 2 cut(s) | 50, 422 |
| EcoT22I | ATGCAT | 1 cut(s) | 565 |
| EcoT38I | GRGCYC | 1 cut(s) | 208 |
| FaeI | CATG | 5 cut(s) | 34, 89, 445, 563, 567 |
| FaqI | GGGAC | 1 cut(s) | 74 |
| FatI | CATG | 5 cut(s) | 30, 85, 441, 559, 563 |
| FauI | CCCGC | 3 cut(s) | 303, 370, 412 |
| Fnu4HI | GCNGC | 2 cut(s) | 109, 402 |
| FriOI | GRGCYC | 1 cut(s) | 208 |
| Fsp4HI | GCNGC | 2 cut(s) | 109, 402 |
| FspBI | CTAG | 1 cut(s) | 78 |
| GlaI | GCGC | 1 cut(s) | 418 |
| GluI | GCNGC | 2 cut(s) | 109, 402 |
| HaeIII | GGCC | 4 cut(s) | 70, 336, 388, 508 |
| HapII | CCGG | 3 cut(s) | 71, 432, 547 |
| HhaI | GCGC | 1 cut(s) | 419 |
| Hin1II | CATG | 5 cut(s) | 34, 89, 445, 563, 567 |
| Hin6I | GCGC | 1 cut(s) | 417 |
| HinP1I | GCGC | 1 cut(s) | 417 |
| HincII | GTYRAC | 1 cut(s) | 475 |
| HindII | GTYRAC | 1 cut(s) | 475 |
| HinfI | GANTC | 1 cut(s) | 536 |
| HpaI | GTTAAC | 1 cut(s) | 475 |
| HpaII | CCGG | 3 cut(s) | 71, 432, 547 |
| HphI | GGTGA | 5 cut(s) | 31, 112, 280, 359, 416 |
| Hpy166II | GTNNAC | 3 cut(s) | 42, 103, 475 |
| Hpy188I | TCNGA | 2 cut(s) | 229, 239 |
| Hpy8I | GTNNAC | 3 cut(s) | 42, 103, 475 |
| HpyAV | CCTTC | 1 cut(s) | 102 |
| HpyCH4IV | ACGT | 1 cut(s) | 65 |
| HpyCH4V | TGCA | 5 cut(s) | 30, 34, 380, 514, 563 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 371 |
| HpyF3I | CTNAG | 1 cut(s) | 293 |
| HpySE526I | ACGT | 1 cut(s) | 65 |
| Hsp92II | CATG | 5 cut(s) | 34, 89, 445, 563, 567 |
| HspAI | GCGC | 1 cut(s) | 417 |
| KspAI | GTTAAC | 1 cut(s) | 475 |
| Kzo9I | GATC | 4 cut(s) | 73, 125, 239, 270 |
| Lsp1109I | GCAGC | 2 cut(s) | 95, 413 |
| LweI | GCATC | 1 cut(s) | 367 |
| MaeI | CTAG | 1 cut(s) | 78 |
| MaeII | ACGT | 1 cut(s) | 65 |
| MaeIII | GTNAC | 4 cut(s) | 10, 19, 50, 422 |
| MalI | GATC | 4 cut(s) | 75, 127, 241, 272 |
| MboI | GATC | 4 cut(s) | 73, 125, 239, 270 |
| MboII | GAAGA | 2 cut(s) | 353, 473 |
| MflI | RGATCY | 2 cut(s) | 73, 239 |
| MhlI | GDGCHC | 1 cut(s) | 208 |
| MlyI | GAGTC | 1 cut(s) | 530 |
| MmeI | TCCRAC | 1 cut(s) | 531 |
| MnlI | CCTC | 7 cut(s) | 10, 190, 337, 369, 400, 438, 511 |
| Mph1103I | ATGCAT | 1 cut(s) | 565 |
| MseI | TTAA | 2 cut(s) | 200, 474 |
| MspA1I | CMGCKG | 1 cut(s) | 365 |
| MspI | CCGG | 3 cut(s) | 71, 432, 547 |
| MspR9I | CCNGG | 1 cut(s) | 432 |
| MvnI | CGCG | 1 cut(s) | 419 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 371 |
| NciI | CCSGG | 1 cut(s) | 432 |
| NdeII | GATC | 4 cut(s) | 73, 125, 239, 270 |
| NlaIII | CATG | 5 cut(s) | 34, 89, 445, 563, 567 |
| NlaIV | GGNNCC | 1 cut(s) | 75 |
| NmeAIII | GCCGAG | 1 cut(s) | 362 |
| NmuCI | GTSAC | 2 cut(s) | 19, 422 |
| NsiI | ATGCAT | 1 cut(s) | 565 |
| NspI | RCATGY | 1 cut(s) | 34 |
| PaeI | GCATGC | 1 cut(s) | 34 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 125 |
| PkrI | GCNGC | 2 cut(s) | 110, 403 |
| PleI | GAGTC | 1 cut(s) | 530 |
| PmaCI | CACGTG | 1 cut(s) | 66 |
| PmlI | CACGTG | 1 cut(s) | 66 |
| PpsI | GAGTC | 1 cut(s) | 530 |
| Ppu21I | YACGTR | 1 cut(s) | 66 |
| Psp124BI | GAGCTC | 1 cut(s) | 208 |
| PspCI | CACGTG | 1 cut(s) | 66 |
| PspEI | GGTNACC | 2 cut(s) | 50, 422 |
| PspN4I | GGNNCC | 1 cut(s) | 75 |
| PspPI | GGNCC | 2 cut(s) | 356, 387 |
| PsuI | RGATCY | 2 cut(s) | 73, 239 |
| RsaI | GTAC | 2 cut(s) | 43, 409 |
| RsaNI | GTAC | 2 cut(s) | 42, 408 |
| SacI | GAGCTC | 1 cut(s) | 208 |
| SaqAI | TTAA | 2 cut(s) | 200, 474 |
| SatI | GCNGC | 2 cut(s) | 109, 402 |
| Sau3AI | GATC | 4 cut(s) | 73, 125, 239, 270 |
| Sau96I | GGNCC | 2 cut(s) | 356, 387 |
| ScaI | AGTACT | 1 cut(s) | 409 |
| SchI | GAGTC | 1 cut(s) | 530 |
| ScrFI | CCNGG | 1 cut(s) | 432 |
| SduI | GDGCHC | 1 cut(s) | 208 |
| SetI | ASST | 8 cut(s) | 21, 41, 57, 68, 208, 294, 361, 385 |
| SfaNI | GCATC | 1 cut(s) | 367 |
| SinI | GGWCC | 1 cut(s) | 356 |
| SphI | GCATGC | 1 cut(s) | 34 |
| SsiI | CCGC | 3 cut(s) | 310, 363, 419 |
| SspMI | CTAG | 1 cut(s) | 78 |
| SstI | GAGCTC | 1 cut(s) | 208 |
| StyD4I | CCNGG | 1 cut(s) | 430 |
| TaiI | ACGT | 1 cut(s) | 68 |
| TatI | WGTACW | 2 cut(s) | 41, 407 |
| Tru1I | TTAA | 2 cut(s) | 200, 474 |
| Tru9I | TTAA | 2 cut(s) | 200, 474 |
| TseFI | GTSAC | 2 cut(s) | 19, 422 |
| TseI | GCWGC | 2 cut(s) | 108, 401 |
| Tsp45I | GTSAC | 2 cut(s) | 19, 422 |
| VpaK11BI | GGWCC | 1 cut(s) | 356 |
| XceI | RCATGY | 1 cut(s) | 34 |
| XspI | CTAG | 1 cut(s) | 78 |
| ZrmI | AGTACT | 1 cut(s) | 409 |
| Zsp2I | ATGCAT | 1 cut(s) | 565 |