Rroxscaffold_2G00146590

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000087
Physical Location & Seq
Reverse (-)
84475996 .. 84477718
1723 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00146590.1

Sequence Viewer

Length: 798 bp
ATGGGTGGCGCCGCACGAGAACCGGCTCCACCAAGGGCTATCGCTATCGCTGCCCCGATGCCTACAATGTCTCTTGCGGATGCTGAACCTGTGCCGAAGAGGAAACCCCGGAAAGGCAAGGAAGACGACAAGATGAATGACAACTTGCTAATGGACATGCTTATGAGCCAAGGAGAAGATGCCCTACACATTGATGTCGATCTCTCGTCGATGAACTTCTCCTTGAGATTGATGACGATGGGTACGGGCACCCCGATCCTAAGGCCCCCGTTACCCGCAGCGACCGAGCCTCTTGTCGGGGACGTTGTCACCATTGCGGATCGGGAAGAGGAAAGGGGCGGAGCCAAAGAGGCAAAAGAAAAATTCTCTAGGACCGGAAGCGTCGCCGTCTCTTGGGCTCTTATCTCGGTGATTCCAATAGTCCCCAAGAAGCCCATCAAGCAATTGCCGAGCGAGTACGGGGTCACCGACAAAAAGTTCGTGTGCTCGATGGTCGGCGATTTAAAGGATATAGACCTCGATCGGGAAGAAGGGCAGCCGGAGAAGGAGCGGGACTCCTTGAAGAAGAAGATAGAGTCCTTAACTCCCATGGTGACCGAGCTAGAGGCGGCGAAGCAACCGATCGCGGAGCTCAAAGGTGAGTTGTTCGAGGCCGGGGATAAGGTGAAGAGCGCCGAGACTCCGAGAAGGAAGTTACGAGTACGCGACGTCATGGAAGGCGAGTGCAGAAACACGGAGGAACGACTTCTGTTGAAAGGCAAGAGGCCGCCGAGTACAAGGCTCTCAAGAGTTTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

265

Amino Acids

29.18

Weight (kDa)

7.63

Isoelectric Point (pI)

45.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000087)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28970 FvH4_2g03432 FvH4_2g17701 FvH4_4g10000 FvH4_4g15481 FvH4_4g15603 FvH4_6g16061 FvH4_6g25501
rosa_chinensis RchiOBHm_Chr2g0137471 RchiOBHm_Chr5g0054331
rosa_laevigata RLG00000019477 RLG00000022653 RLG00000029242
rosa_multiflora Rmu_co8012786.1_g000001 Rmu_co8165502.1_g000001 Rmu_co8383963.1_g000001 Rmu_co8428657.1_g000002 Rmu_co8441559.1_g000002 Rmu_co8493267.1_g000002 Rmu_co8512765.1_g000001 Rmu_co8522487.1_g000001 Rmu_sc0000045.1_g000034 Rmu_sc0000077.1_g000002 Rmu_sc0000177.1_g000003 Rmu_sc0000194.1_g000003 Rmu_sc0000239.1_g000073 Rmu_sc0000265.1_g000006 Rmu_sc0000271.1_g000031 Rmu_sc0000276.1_g000021 Rmu_sc0000279.1_g000008 Rmu_sc0000280.1_g000017 Rmu_sc0000315.1_g000047 Rmu_sc0000381.1_g000029 Rmu_sc0000423.1_g000013 Rmu_sc0000455.1_g000020 Rmu_sc0000596.1_g000032 Rmu_sc0000605.1_g000020 Rmu_sc0000643.1_g000006 Rmu_sc0000676.1_g000028 Rmu_sc0000698.1_g000063 Rmu_sc0000698.1_g000064 Rmu_sc0000706.1_g000030 Rmu_sc0000744.1_g000078 Rmu_sc0000744.1_g000098 Rmu_sc0000779.1_g000016 Rmu_sc0000808.1_g000006 Rmu_sc0000830.1_g000044 Rmu_sc0000842.1_g000021 Rmu_sc0000883.1_g000019 Rmu_sc0000904.1_g000013 Rmu_sc0000924.1_g000001 Rmu_sc0000959.1_g000012 Rmu_sc0001045.1_g000005 Rmu_sc0001069.1_g000021 Rmu_sc0001107.1_g000001 Rmu_sc0001155.1_g000006 Rmu_sc0001244.1_g000023 Rmu_sc0001302.1_g000017 Rmu_sc0001382.1_g000007 Rmu_sc0001393.1_g000026 Rmu_sc0001436.1_g000015 Rmu_sc0001464.1_g000021 Rmu_sc0001477.1_g000001 Rmu_sc0001483.1_g000024 Rmu_sc0001483.1_g000026 Rmu_sc0001499.1_g000020 Rmu_sc0001518.1_g000001 Rmu_sc0001520.1_g000003 Rmu_sc0001522.1_g000020 Rmu_sc0001529.1_g000008 Rmu_sc0001554.1_g000016 Rmu_sc0001563.1_g000018 Rmu_sc0001565.1_g000024 Rmu_sc0001578.1_g000014 Rmu_sc0001611.1_g000003 Rmu_sc0001700.1_g000026 Rmu_sc0001849.1_g000075 Rmu_sc0001866.1_g000011 Rmu_sc0001898.1_g000013 Rmu_sc0002029.1_g000007 Rmu_sc0002082.1_g000055 Rmu_sc0002206.1_g000032 Rmu_sc0002253.1_g000031 Rmu_sc0002264.1_g000020 Rmu_sc0002414.1_g000024 Rmu_sc0002451.1_g000063 Rmu_sc0002490.1_g000015 Rmu_sc0002539.1_g000010 Rmu_sc0002545.1_g000060 Rmu_sc0002564.1_g000020 Rmu_sc0002584.1_g000062 Rmu_sc0002669.1_g000034 Rmu_sc0002669.1_g000035 Rmu_sc0002690.1_g000010 Rmu_sc0002764.1_g000070 Rmu_sc0002786.1_g000006 Rmu_sc0002804.1_g000013 Rmu_sc0002868.1_g000015 Rmu_sc0002868.1_g000055 Rmu_sc0002889.1_g000039 Rmu_sc0002892.1_g000070 Rmu_sc0002926.1_g000001 Rmu_sc0002986.1_g000063 Rmu_sc0003032.1_g000023 Rmu_sc0003033.1_g000059 Rmu_sc0003063.1_g000022 Rmu_sc0003079.1_g000001 Rmu_sc0003092.1_g000012 Rmu_sc0003244.1_g000013 Rmu_sc0003276.1_g000004 Rmu_sc0003328.1_g000003 Rmu_sc0003352.1_g000034 Rmu_sc0003352.1_g000035 Rmu_sc0003419.1_g000038 Rmu_sc0003551.1_g000015 Rmu_sc0003669.1_g000036 Rmu_sc0003760.1_g000029 Rmu_sc0003781.1_g000021 Rmu_sc0003865.1_g000002 Rmu_sc0004012.1_g000010 Rmu_sc0004140.1_g000028 Rmu_sc0004152.1_g000002 Rmu_sc0004303.1_g000009 Rmu_sc0004336.1_g000039 Rmu_sc0004365.1_g000012 Rmu_sc0004365.1_g000013 Rmu_sc0004379.1_g000010 Rmu_sc0004529.1_g000017 Rmu_sc0004529.1_g000018 Rmu_sc0004536.1_g000025 Rmu_sc0004574.1_g000019 Rmu_sc0004602.1_g000042 Rmu_sc0004836.1_g000018 Rmu_sc0004841.1_g000037 Rmu_sc0004903.1_g000006 Rmu_sc0004977.1_g000006 Rmu_sc0005137.1_g000025 Rmu_sc0005292.1_g000031 Rmu_sc0005292.1_g000032 Rmu_sc0005353.1_g000014 Rmu_sc0005406.1_g000005 Rmu_sc0005469.1_g000016 Rmu_sc0005506.1_g000003 Rmu_sc0005507.1_g000003 Rmu_sc0005629.1_g000006 Rmu_sc0005664.1_g000033 Rmu_sc0005665.1_g000042 Rmu_sc0005685.1_g000003 Rmu_sc0006375.1_g000004 Rmu_sc0006444.1_g000020 Rmu_sc0006453.1_g000012 Rmu_sc0006676.1_g000013 Rmu_sc0006934.1_g000001 Rmu_sc0006945.1_g000001 Rmu_sc0006945.1_g000006 Rmu_sc0006954.1_g000015 Rmu_sc0007102.1_g000012 Rmu_sc0007144.1_g000007 Rmu_sc0007144.1_g000008 Rmu_sc0007230.1_g000003 Rmu_sc0007415.1_g000040 Rmu_sc0007729.1_g000001 Rmu_sc0007920.1_g000017 Rmu_sc0008058.1_g000023 Rmu_sc0008199.1_g000008 Rmu_sc0008232.1_g000010 Rmu_sc0008232.1_g000011 Rmu_sc0008336.1_g000011 Rmu_sc0008581.1_g000007 Rmu_sc0008623.1_g000002 Rmu_sc0009255.1_g000007 Rmu_sc0009479.1_g000008 Rmu_sc0009483.1_g000001 Rmu_sc0009641.1_g000001 Rmu_sc0009660.1_g000003 Rmu_sc0009978.1_g000010 Rmu_sc0010048.1_g000009 Rmu_sc0010547.1_g000007 Rmu_sc0010988.1_g000006 Rmu_sc0011148.1_g000003 Rmu_sc0011203.1_g000010 Rmu_sc0011375.1_g000004 Rmu_sc0011375.1_g000005 Rmu_sc0011559.1_g000005 Rmu_sc0012199.1_g000001 Rmu_sc0013224.1_g000005 Rmu_sc0013931.1_g000004 Rmu_sc0013931.1_g000005 Rmu_sc0013985.1_g000006 Rmu_sc0014406.1_g000001 Rmu_sc0014463.1_g000002 Rmu_sc0016218.1_g000005 Rmu_sc0019345.1_g000002 Rmu_sc0019655.1_g000001 Rmu_sc0020833.1_g000001 Rmu_sc0024204.1_g000001 Rmu_sc0024309.1_g000001 Rmu_sc0027177.1_g000002 Rmu_sc0027778.1_g000002 Rmu_sc0028215.1_g000001 Rmu_sc0029924.1_g000001 Rmu_sc0032552.1_g000001 Rmu_sc0036156.1_g000001 Rmu_sc0037073.1_g000001 Rmu_sc0040495.1_g000001 Rmu_ssc0000255.1_g000056 Rmu_ssc0000309.1_g000006 Rmu_ssc0000312.1_g000005 Rmu_ssc0000371.1_g000021 Rmu_ssc0000372.1_g000010 Rmu_ssc0000372.1_g000011 Rmu_ssc0000372.1_g000069 Rmu_ssc0000386.1_g000005 Rmu_ssc0000386.1_g000006 Rmu_ssc0000443.1_g000032
rosa_roxburghii Rroxscaffold_154G00447940 Rroxscaffold_1G00009660 Rroxscaffold_1G00016990 Rroxscaffold_1G00021370 Rroxscaffold_1G00037860 Rroxscaffold_2G00101680 Rroxscaffold_2G00101690 Rroxscaffold_2G00122690 Rroxscaffold_2G00122700 Rroxscaffold_2G00123340 Rroxscaffold_2G00123350 Rroxscaffold_2G00125480 Rroxscaffold_2G00136130 Rroxscaffold_2G00146590 Rroxscaffold_3G00218350 Rroxscaffold_3G00218360 Rroxscaffold_3G00218370 Rroxscaffold_3G00218380 Rroxscaffold_3G00232530 Rroxscaffold_3G00262600 Rroxscaffold_3G00263070 Rroxscaffold_4G00289030 Rroxscaffold_4G00296530 Rroxscaffold_4G00306140 Rroxscaffold_4G00306150 Rroxscaffold_4G00306380 Rroxscaffold_4G00306390 Rroxscaffold_4G00306400 Rroxscaffold_4G00309560 Rroxscaffold_4G00316600 Rroxscaffold_4G00322820 Rroxscaffold_4G00322830 Rroxscaffold_4G00324370 Rroxscaffold_4G00332350 Rroxscaffold_5G00346450 Rroxscaffold_5G00352960 Rroxscaffold_5G00352970 Rroxscaffold_5G00360310 Rroxscaffold_5G00373670 Rroxscaffold_5G00378610 Rroxscaffold_5G00378940 Rroxscaffold_6G00388240 Rroxscaffold_6G00389010 Rroxscaffold_6G00389030 Rroxscaffold_6G00399900 Rroxscaffold_6G00399910 Rroxscaffold_6G00400260 Rroxscaffold_6G00400270 Rroxscaffold_6G00400280 Rroxscaffold_7G00164100 Rroxscaffold_7G00176300 Rroxscaffold_7G00176310 Rroxscaffold_7G00177210 Rroxscaffold_7G00204300 Rroxscaffold_7G00204310 Rroxscaffold_7G00204320
rosa_rugosa Rorug06G0076500
rosa_samantha Rh1AG108400 Rh2AG377100 Rh2AG377200 Rh2BG383500 Rh2CG362800 Rh2DG399900 Rh2DG439600 Rh2DG672800 Rh6DG186300 Rh7AG351400 Rh7BG368500 Rh7CG368800 Rh7CG411100 Rh7DG424400
rosa_wichuraiana Rw1G021100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 711
AccB1I GGYRCC 2 cut(s) 8, 248
AccBSI CCGCTC 1 cut(s) 550
AccII CGCG 2 cut(s) 626, 705
AciI CCGC 9 cut(s) 12, 77, 276, 317, 339, 550, 608, 626, 767
AclWI GGATC 2 cut(s) 250, 327
AcsI RAATTY 1 cut(s) 362
AcyI GRCGYC 2 cut(s) 9, 708
AfaI GTAC 4 cut(s) 244, 458, 702, 775
AfiI CCNNNNNNNGG 4 cut(s) 113, 296, 393, 523
AgsI TTSAA 2 cut(s) 562, 754
AluBI AGCT 2 cut(s) 601, 631
AluI AGCT 2 cut(s) 601, 631
Alw21I GWGCWC 2 cut(s) 488, 633
Alw26I GTCTC 3 cut(s) 75, 394, 671
AlwI GGATC 2 cut(s) 250, 327
AoxI GGCC 3 cut(s) 263, 651, 764
ApeKI GCWGC 3 cut(s) 50, 278, 535
ApoI RAATTY 1 cut(s) 362
ArsI GACNNNNNNTTYG 2 cut(s) 461, 493
Asp700I GAANNNNTTC 1 cut(s) 744
AspLEI GCGC 2 cut(s) 11, 674
AspS9I GGNCC 2 cut(s) 264, 372
AsuC2I CCSGG 2 cut(s) 109, 655
AsuHPI GGTGA 6 cut(s) 301, 421, 457, 604, 650, 676
AvaII GGWCC 1 cut(s) 372
AxyI CCTNAGG 1 cut(s) 260
BaeGI GKGCMC 1 cut(s) 251
BanI GGYRCC 2 cut(s) 8, 248
BanII GRGCYC 2 cut(s) 400, 633
BarI GAAGNNNNNNTAC 2 cut(s) 168, 200
BauI CACGAG 1 cut(s) 15
BbsI GAAGAC 1 cut(s) 129
Bbv12I GWGCWC 2 cut(s) 488, 633
BbvI GCAGC 3 cut(s) 37, 290, 547
BccI CCATC 3 cut(s) 232, 443, 484
BceAI ACGGC 1 cut(s) 371
BcnI CCSGG 2 cut(s) 109, 655
BcoDI GTCTC 3 cut(s) 75, 394, 671
BfaI CTAG 2 cut(s) 369, 602
BfoI RGCGCY 2 cut(s) 12, 675
BglI GCCNNNNNGGC 1 cut(s) 350
BisI GCNGC 6 cut(s) 12, 51, 279, 536, 609, 767
BlsI GCNGC 6 cut(s) 13, 52, 280, 537, 610, 768
Bme1390I CCNGG 2 cut(s) 109, 655
Bme18I GGWCC 1 cut(s) 372
BmgT120I GGNCC 2 cut(s) 264, 372
BmiI GGNNCC 5 cut(s) 10, 27, 250, 266, 343
BmrFI CCNGG 2 cut(s) 109, 655
BmsI GCATC 3 cut(s) 48, 70, 169
BpiI GAAGAC 1 cut(s) 129
BplI GAGNNNNNCTC 2 cut(s) 539, 571
BpuEI CTTGAG 2 cut(s) 244, 769
BpuMI CCSGG 2 cut(s) 109, 655
BsaBI GATNNNNATC 1 cut(s) 198
BsaHI GRCGYC 2 cut(s) 9, 708
BsaJI CCNNGG 5 cut(s) 32, 107, 169, 588, 654
BsaWI WCCGGW 1 cut(s) 374
Bsc4I CCNNNNNNNGG 4 cut(s) 113, 296, 393, 523
Bse118I RCCGGY 1 cut(s) 22
Bse21I CCTNAGG 1 cut(s) 260
Bse3DI GCAATG 1 cut(s) 312
Bse8I GATNNNNATC 1 cut(s) 198
BseDI CCNNGG 5 cut(s) 32, 107, 169, 588, 654
BseGI GGATG 1 cut(s) 85
BseJI GATNNNNATC 1 cut(s) 198
BseLI CCNNNNNNNGG 4 cut(s) 113, 296, 393, 523
BseMI GCAATG 1 cut(s) 312
BseSI GKGCMC 1 cut(s) 251
BseXI GCAGC 3 cut(s) 37, 290, 547
BsgI GTGCAG 1 cut(s) 745
Bsh1236I CGCG 2 cut(s) 626, 705
Bsh1285I CGRYCG 3 cut(s) 285, 523, 624
BshFI GGCC 3 cut(s) 265, 653, 766
BshNI GGYRCC 2 cut(s) 8, 248
BsiEI CGRYCG 3 cut(s) 285, 523, 624
BsiHKAI GWGCWC 2 cut(s) 488, 633
BsiSI CCGG 5 cut(s) 23, 109, 375, 539, 654
BslFI GGGAC 3 cut(s) 314, 407, 566
BslI CCNNNNNNNGG 4 cut(s) 113, 296, 393, 523
BsmAI GTCTC 3 cut(s) 75, 394, 671
BsmBI CGTCTC 1 cut(s) 394
BsmFI GGGAC 3 cut(s) 314, 407, 566
BsnI GGCC 3 cut(s) 265, 653, 766
Bsp1286I GDGCHC 4 cut(s) 251, 400, 488, 633
Bsp143I GATC 5 cut(s) 199, 255, 319, 520, 621
Bsp19I CCATGG 1 cut(s) 588
BspACI CCGC 9 cut(s) 12, 77, 276, 317, 339, 550, 608, 626, 767
BspANI GGCC 3 cut(s) 265, 653, 766
BspFNI CGCG 2 cut(s) 626, 705
BspLI GGNNCC 5 cut(s) 10, 27, 250, 266, 343
BspPI GGATC 2 cut(s) 250, 327
BspQI GCTCTTC 1 cut(s) 662
BspT107I GGYRCC 2 cut(s) 8, 248
BsrBI CCGCTC 1 cut(s) 550
BsrDI GCAATG 1 cut(s) 312
BsrFI RCCGGY 1 cut(s) 22
BssAI RCCGGY 1 cut(s) 22
BssECI CCNNGG 5 cut(s) 32, 107, 169, 588, 654
BssMI GATC 5 cut(s) 199, 255, 319, 520, 621
BssNI GRCGYC 2 cut(s) 9, 708
BssSI CACGAG 1 cut(s) 15
BssT1I CCWWGG 3 cut(s) 32, 169, 588
Bst2BI CACGAG 1 cut(s) 15
Bst6I CTCTTC 3 cut(s) 92, 321, 662
BstACI GRCGYC 2 cut(s) 9, 708
BstDEI CTNAG 1 cut(s) 260
BstDSI CCRYGG 1 cut(s) 588
BstEII GGTNACC 2 cut(s) 463, 592
BstF5I GGATG 1 cut(s) 85
BstFNI CGCG 2 cut(s) 626, 705
BstH2I RGCGCY 2 cut(s) 12, 675
BstHHI GCGC 2 cut(s) 11, 674
BstKTI GATC 5 cut(s) 202, 258, 322, 523, 624
BstMAI GTCTC 3 cut(s) 75, 394, 671
BstMBI GATC 5 cut(s) 199, 255, 319, 520, 621
BstMCI CGRYCG 3 cut(s) 285, 523, 624
BstMWI GCNNNNNNNGC 3 cut(s) 50, 350, 439
BstNSI RCATGY 1 cut(s) 160
BstPI GGTNACC 2 cut(s) 463, 592
BstSCI CCNGG 2 cut(s) 107, 653
BstSLI GKGCMC 1 cut(s) 251
BstUI CGCG 2 cut(s) 626, 705
BstV1I GCAGC 3 cut(s) 37, 290, 547
BstV2I GAAGAC 1 cut(s) 129
Bsu36I CCTNAGG 1 cut(s) 260
BsuRI GGCC 3 cut(s) 265, 653, 766
BtgI CCRYGG 1 cut(s) 588
BtsCI GGATG 1 cut(s) 85
CfoI GCGC 2 cut(s) 11, 674
Cfr10I RCCGGY 1 cut(s) 22
Cfr13I GGNCC 2 cut(s) 264, 372
CseI GACGC 1 cut(s) 370
Csp6I GTAC 4 cut(s) 243, 457, 701, 774
CviAII CATG 3 cut(s) 157, 589, 712
CviQI GTAC 4 cut(s) 243, 457, 701, 774
DdeI CTNAG 1 cut(s) 260
DinI GGCGCC 1 cut(s) 10
DpnI GATC 5 cut(s) 201, 257, 321, 522, 623
DpnII GATC 5 cut(s) 199, 255, 319, 520, 621
DraI TTTAAA 1 cut(s) 504
Eam1104I CTCTTC 3 cut(s) 92, 321, 662
EarI CTCTTC 3 cut(s) 92, 321, 662
EciI GGCGGA 1 cut(s) 354
Ecl136II GAGCTC 1 cut(s) 631
Eco130I CCWWGG 3 cut(s) 32, 169, 588
Eco24I GRGCYC 2 cut(s) 400, 633
Eco47I GGWCC 1 cut(s) 372
Eco53kI GAGCTC 1 cut(s) 631
Eco81I CCTNAGG 1 cut(s) 260
Eco91I GGTNACC 2 cut(s) 463, 592
EcoICRI GAGCTC 1 cut(s) 631
EcoO109I RGGNCCY 1 cut(s) 264
EcoO65I GGTNACC 2 cut(s) 463, 592
EcoT14I CCWWGG 3 cut(s) 32, 169, 588
EcoT38I GRGCYC 2 cut(s) 400, 633
EgeI GGCGCC 1 cut(s) 10
EheI GGCGCC 1 cut(s) 10
ErhI CCWWGG 3 cut(s) 32, 169, 588
Esp3I CGTCTC 1 cut(s) 394
FaeI CATG 3 cut(s) 160, 592, 715
FaiI YATR 5 cut(s) 158, 164, 512, 590, 713
FaqI GGGAC 3 cut(s) 314, 407, 566
FatI CATG 3 cut(s) 156, 588, 711
FauI CCCGC 2 cut(s) 283, 543
Fnu4HI GCNGC 6 cut(s) 12, 51, 279, 536, 609, 767
FokI GGATG 1 cut(s) 92
FriOI GRGCYC 2 cut(s) 400, 633
Fsp4HI GCNGC 6 cut(s) 12, 51, 279, 536, 609, 767
FspBI CTAG 2 cut(s) 369, 602
GlaI GCGC 2 cut(s) 10, 673
GluI GCNGC 6 cut(s) 12, 51, 279, 536, 609, 767
HaeII RGCGCY 2 cut(s) 12, 675
HaeIII GGCC 3 cut(s) 265, 653, 766
HapII CCGG 5 cut(s) 23, 109, 375, 539, 654
HgaI GACGC 1 cut(s) 370
HhaI GCGC 2 cut(s) 11, 674
Hin1I GRCGYC 2 cut(s) 9, 708
Hin1II CATG 3 cut(s) 160, 592, 715
Hin6I GCGC 2 cut(s) 9, 672
HinP1I GCGC 2 cut(s) 9, 672
HinfI GANTC 4 cut(s) 412, 554, 575, 679
HpaII CCGG 5 cut(s) 23, 109, 375, 539, 654
HphI GGTGA 6 cut(s) 301, 421, 457, 604, 650, 676
Hpy188I TCNGA 1 cut(s) 684
Hpy188III TCNNGA 3 cut(s) 323, 524, 786
Hpy99I CGWCG 3 cut(s) 211, 386, 710
HpyAV CCTTC 4 cut(s) 524, 538, 681, 710
HpyCH4IV ACGT 2 cut(s) 303, 708
HpyCH4V TGCA 1 cut(s) 726
HpyF10VI GCNNNNNNNGC 3 cut(s) 50, 350, 439
HpyF3I CTNAG 1 cut(s) 260
HpySE526I ACGT 2 cut(s) 303, 708
Hsp92I GRCGYC 2 cut(s) 9, 708
Hsp92II CATG 3 cut(s) 160, 592, 715
HspAI GCGC 2 cut(s) 9, 672
KasI GGCGCC 1 cut(s) 8
Kzo9I GATC 5 cut(s) 199, 255, 319, 520, 621
LguI GCTCTTC 1 cut(s) 662
LmnI GCTCC 4 cut(s) 31, 341, 547, 628
LpnPI CCDG 6 cut(s) 36, 102, 122, 388, 552, 667
Lsp1109I GCAGC 3 cut(s) 37, 290, 547
LweI GCATC 3 cut(s) 48, 70, 169
MaeI CTAG 2 cut(s) 369, 602
MaeII ACGT 2 cut(s) 303, 708
MaeIII GTNAC 5 cut(s) 270, 307, 463, 592, 693
MalI GATC 5 cut(s) 201, 257, 321, 522, 623
MbiI CCGCTC 1 cut(s) 550
MboI GATC 5 cut(s) 199, 255, 319, 520, 621
MboII GAAGA 9 cut(s) 109, 134, 188, 338, 539, 574, 577, 580, 679
MfeI CAATTG 1 cut(s) 443
MhlI GDGCHC 4 cut(s) 251, 400, 488, 633
MluCI AATT 2 cut(s) 362, 443
Mly113I GGCGCC 1 cut(s) 9
MlyI GAGTC 3 cut(s) 548, 584, 673
MnlI CCTC 9 cut(s) 93, 300, 322, 343, 527, 598, 643, 730, 756
MroXI GAANNNNTTC 1 cut(s) 744
MseI TTAA 2 cut(s) 503, 581
MslI CAYNNNNRTG 2 cut(s) 161, 192
MspI CCGG 5 cut(s) 23, 109, 375, 539, 654
MspR9I CCNGG 2 cut(s) 109, 655
MunI CAATTG 1 cut(s) 443
MvnI CGCG 2 cut(s) 626, 705
MwoI GCNNNNNNNGC 3 cut(s) 50, 350, 439
NarI GGCGCC 1 cut(s) 9
NciI CCSGG 2 cut(s) 109, 655
NcoI CCATGG 1 cut(s) 588
NdeII GATC 5 cut(s) 199, 255, 319, 520, 621
NlaIII CATG 3 cut(s) 160, 592, 715
NlaIV GGNNCC 5 cut(s) 10, 27, 250, 266, 343
NmeAIII GCCGAG 3 cut(s) 474, 700, 795
NmuCI GTSAC 3 cut(s) 307, 463, 592
NspI RCATGY 1 cut(s) 160
PciSI GCTCTTC 1 cut(s) 662
PcsI WCGNNNNNNNCGW 2 cut(s) 251, 465
PdmI GAANNNNTTC 1 cut(s) 744
PfeI GAWTC 1 cut(s) 412
PflFI GACNNNGTC 1 cut(s) 305
PkrI GCNGC 6 cut(s) 13, 52, 280, 537, 610, 768
Ple19I CGATCG 2 cut(s) 523, 624
PleI GAGTC 3 cut(s) 548, 583, 673
PluTI GGCGCC 1 cut(s) 12
PpsI GAGTC 3 cut(s) 548, 583, 673
Psp124BI GAGCTC 1 cut(s) 633
PspEI GGTNACC 2 cut(s) 463, 592
PspN4I GGNNCC 5 cut(s) 10, 27, 250, 266, 343
PspPI GGNCC 2 cut(s) 264, 372
PsyI GACNNNGTC 1 cut(s) 305
PvuI CGATCG 2 cut(s) 523, 624
RsaI GTAC 4 cut(s) 244, 458, 702, 775
RsaNI GTAC 4 cut(s) 243, 457, 701, 774
RseI CAYNNNNRTG 2 cut(s) 161, 192
SacI GAGCTC 1 cut(s) 633
SapI GCTCTTC 1 cut(s) 662
SaqAI TTAA 2 cut(s) 503, 581
SatI GCNGC 6 cut(s) 12, 51, 279, 536, 609, 767
Sau3AI GATC 5 cut(s) 199, 255, 319, 520, 621
Sau96I GGNCC 2 cut(s) 264, 372
SchI GAGTC 3 cut(s) 548, 584, 673
ScrFI CCNGG 2 cut(s) 109, 655
SduI GDGCHC 4 cut(s) 251, 400, 488, 633
SetI ASST 8 cut(s) 91, 306, 519, 603, 633, 640, 666, 711
SfaNI GCATC 3 cut(s) 48, 70, 169
SfoI GGCGCC 1 cut(s) 10
SinI GGWCC 1 cut(s) 372
SmiMI CAYNNNNRTG 2 cut(s) 161, 192
SmlI CTYRAG 2 cut(s) 223, 784
SmoI CTYRAG 2 cut(s) 223, 784
Sse9I AATT 2 cut(s) 362, 443
SsiI CCGC 9 cut(s) 12, 77, 276, 317, 339, 550, 608, 626, 767
SspDI GGCGCC 1 cut(s) 8
SspMI CTAG 2 cut(s) 369, 602
SstI GAGCTC 1 cut(s) 633
StyD4I CCNGG 2 cut(s) 107, 653
StyI CCWWGG 3 cut(s) 32, 169, 588
TaiI ACGT 2 cut(s) 306, 711
TaqI TCGA 5 cut(s) 198, 209, 488, 519, 648
TaqII GACCGA 2 cut(s) 299, 611
TasI AATT 2 cut(s) 362, 443
TatI WGTACW 1 cut(s) 773
TauI GCSGC 3 cut(s) 14, 611, 769
TfiI GAWTC 1 cut(s) 412
Tru1I TTAA 2 cut(s) 503, 581
Tru9I TTAA 2 cut(s) 503, 581
TseFI GTSAC 3 cut(s) 307, 463, 592
TseI GCWGC 3 cut(s) 50, 278, 535
Tsp45I GTSAC 3 cut(s) 307, 463, 592
TspDTI ATGAA 2 cut(s) 149, 227
TspGWI ACGGA 1 cut(s) 749
Tth111I GACNNNGTC 1 cut(s) 305
VpaK11BI GGWCC 1 cut(s) 372
XapI RAATTY 1 cut(s) 362
XceI RCATGY 1 cut(s) 160
XmnI GAANNNNTTC 1 cut(s) 744
XspI CTAG 2 cut(s) 369, 602
ZraI GACGTC 1 cut(s) 709
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.