Rroxscaffold_6G00400260

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000087
Physical Location & Seq
Reverse (-)
22384550 .. 22388104
3555 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00400260.1

Sequence Viewer

Length: 396 bp
ATGCTACTTGTTGCTCGGGACAAGGCTGTGATCATAAAGTATAAAGAGTGGGTGGCAGCTAGGTACTTAGATGAGGCTAAATTCCGACGGGGACTTCTCGAGAAGAAGGGAGCGAGGAGGCCAAGAAGAAGGAATAGGAAAGCCGAGTGCAAGACACGAGGAAGGGGCAAGTGGTGGTCATCCCGATGCATGCTTAAGGGTCACGAAGACATGTTTAGTCATGGCAAAGGCTCTATTTGCAAGAGCGTAAGAGATAAGATAGTGACTTATCTTATGCCGAGTTGGAGGCTAGCGGAGTTATCCGAGCATGACACTCCATTGCTTTCGAAGAACACCATGGTAGATGACCAACGTTTTCATTTACTGATTGAAATGGTGTCCGATATACCTCGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

131

Amino Acids

15.49

Weight (kDa)

10.25

Isoelectric Point (pI)

31.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000087)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28970 FvH4_2g03432 FvH4_2g17701 FvH4_4g10000 FvH4_4g15481 FvH4_4g15603 FvH4_6g16061 FvH4_6g25501
rosa_chinensis RchiOBHm_Chr2g0137471 RchiOBHm_Chr5g0054331
rosa_laevigata RLG00000019477 RLG00000022653 RLG00000029242
rosa_multiflora Rmu_co8012786.1_g000001 Rmu_co8165502.1_g000001 Rmu_co8383963.1_g000001 Rmu_co8428657.1_g000002 Rmu_co8441559.1_g000002 Rmu_co8493267.1_g000002 Rmu_co8512765.1_g000001 Rmu_co8522487.1_g000001 Rmu_sc0000045.1_g000034 Rmu_sc0000077.1_g000002 Rmu_sc0000177.1_g000003 Rmu_sc0000194.1_g000003 Rmu_sc0000239.1_g000073 Rmu_sc0000265.1_g000006 Rmu_sc0000271.1_g000031 Rmu_sc0000276.1_g000021 Rmu_sc0000279.1_g000008 Rmu_sc0000280.1_g000017 Rmu_sc0000315.1_g000047 Rmu_sc0000381.1_g000029 Rmu_sc0000423.1_g000013 Rmu_sc0000455.1_g000020 Rmu_sc0000596.1_g000032 Rmu_sc0000605.1_g000020 Rmu_sc0000643.1_g000006 Rmu_sc0000676.1_g000028 Rmu_sc0000698.1_g000063 Rmu_sc0000698.1_g000064 Rmu_sc0000706.1_g000030 Rmu_sc0000744.1_g000078 Rmu_sc0000744.1_g000098 Rmu_sc0000779.1_g000016 Rmu_sc0000808.1_g000006 Rmu_sc0000830.1_g000044 Rmu_sc0000842.1_g000021 Rmu_sc0000883.1_g000019 Rmu_sc0000904.1_g000013 Rmu_sc0000924.1_g000001 Rmu_sc0000959.1_g000012 Rmu_sc0001045.1_g000005 Rmu_sc0001069.1_g000021 Rmu_sc0001107.1_g000001 Rmu_sc0001155.1_g000006 Rmu_sc0001244.1_g000023 Rmu_sc0001302.1_g000017 Rmu_sc0001382.1_g000007 Rmu_sc0001393.1_g000026 Rmu_sc0001436.1_g000015 Rmu_sc0001464.1_g000021 Rmu_sc0001477.1_g000001 Rmu_sc0001483.1_g000024 Rmu_sc0001483.1_g000026 Rmu_sc0001499.1_g000020 Rmu_sc0001518.1_g000001 Rmu_sc0001520.1_g000003 Rmu_sc0001522.1_g000020 Rmu_sc0001529.1_g000008 Rmu_sc0001554.1_g000016 Rmu_sc0001563.1_g000018 Rmu_sc0001565.1_g000024 Rmu_sc0001578.1_g000014 Rmu_sc0001611.1_g000003 Rmu_sc0001700.1_g000026 Rmu_sc0001849.1_g000075 Rmu_sc0001866.1_g000011 Rmu_sc0001898.1_g000013 Rmu_sc0002029.1_g000007 Rmu_sc0002082.1_g000055 Rmu_sc0002206.1_g000032 Rmu_sc0002253.1_g000031 Rmu_sc0002264.1_g000020 Rmu_sc0002414.1_g000024 Rmu_sc0002451.1_g000063 Rmu_sc0002490.1_g000015 Rmu_sc0002539.1_g000010 Rmu_sc0002545.1_g000060 Rmu_sc0002564.1_g000020 Rmu_sc0002584.1_g000062 Rmu_sc0002669.1_g000034 Rmu_sc0002669.1_g000035 Rmu_sc0002690.1_g000010 Rmu_sc0002764.1_g000070 Rmu_sc0002786.1_g000006 Rmu_sc0002804.1_g000013 Rmu_sc0002868.1_g000015 Rmu_sc0002868.1_g000055 Rmu_sc0002889.1_g000039 Rmu_sc0002892.1_g000070 Rmu_sc0002926.1_g000001 Rmu_sc0002986.1_g000063 Rmu_sc0003032.1_g000023 Rmu_sc0003033.1_g000059 Rmu_sc0003063.1_g000022 Rmu_sc0003079.1_g000001 Rmu_sc0003092.1_g000012 Rmu_sc0003244.1_g000013 Rmu_sc0003276.1_g000004 Rmu_sc0003328.1_g000003 Rmu_sc0003352.1_g000034 Rmu_sc0003352.1_g000035 Rmu_sc0003419.1_g000038 Rmu_sc0003551.1_g000015 Rmu_sc0003669.1_g000036 Rmu_sc0003760.1_g000029 Rmu_sc0003781.1_g000021 Rmu_sc0003865.1_g000002 Rmu_sc0004012.1_g000010 Rmu_sc0004140.1_g000028 Rmu_sc0004152.1_g000002 Rmu_sc0004303.1_g000009 Rmu_sc0004336.1_g000039 Rmu_sc0004365.1_g000012 Rmu_sc0004365.1_g000013 Rmu_sc0004379.1_g000010 Rmu_sc0004529.1_g000017 Rmu_sc0004529.1_g000018 Rmu_sc0004536.1_g000025 Rmu_sc0004574.1_g000019 Rmu_sc0004602.1_g000042 Rmu_sc0004836.1_g000018 Rmu_sc0004841.1_g000037 Rmu_sc0004903.1_g000006 Rmu_sc0004977.1_g000006 Rmu_sc0005137.1_g000025 Rmu_sc0005292.1_g000031 Rmu_sc0005292.1_g000032 Rmu_sc0005353.1_g000014 Rmu_sc0005406.1_g000005 Rmu_sc0005469.1_g000016 Rmu_sc0005506.1_g000003 Rmu_sc0005507.1_g000003 Rmu_sc0005629.1_g000006 Rmu_sc0005664.1_g000033 Rmu_sc0005665.1_g000042 Rmu_sc0005685.1_g000003 Rmu_sc0006375.1_g000004 Rmu_sc0006444.1_g000020 Rmu_sc0006453.1_g000012 Rmu_sc0006676.1_g000013 Rmu_sc0006934.1_g000001 Rmu_sc0006945.1_g000001 Rmu_sc0006945.1_g000006 Rmu_sc0006954.1_g000015 Rmu_sc0007102.1_g000012 Rmu_sc0007144.1_g000007 Rmu_sc0007144.1_g000008 Rmu_sc0007230.1_g000003 Rmu_sc0007415.1_g000040 Rmu_sc0007729.1_g000001 Rmu_sc0007920.1_g000017 Rmu_sc0008058.1_g000023 Rmu_sc0008199.1_g000008 Rmu_sc0008232.1_g000010 Rmu_sc0008232.1_g000011 Rmu_sc0008336.1_g000011 Rmu_sc0008581.1_g000007 Rmu_sc0008623.1_g000002 Rmu_sc0009255.1_g000007 Rmu_sc0009479.1_g000008 Rmu_sc0009483.1_g000001 Rmu_sc0009641.1_g000001 Rmu_sc0009660.1_g000003 Rmu_sc0009978.1_g000010 Rmu_sc0010048.1_g000009 Rmu_sc0010547.1_g000007 Rmu_sc0010988.1_g000006 Rmu_sc0011148.1_g000003 Rmu_sc0011203.1_g000010 Rmu_sc0011375.1_g000004 Rmu_sc0011375.1_g000005 Rmu_sc0011559.1_g000005 Rmu_sc0012199.1_g000001 Rmu_sc0013224.1_g000005 Rmu_sc0013931.1_g000004 Rmu_sc0013931.1_g000005 Rmu_sc0013985.1_g000006 Rmu_sc0014406.1_g000001 Rmu_sc0014463.1_g000002 Rmu_sc0016218.1_g000005 Rmu_sc0019345.1_g000002 Rmu_sc0019655.1_g000001 Rmu_sc0020833.1_g000001 Rmu_sc0024204.1_g000001 Rmu_sc0024309.1_g000001 Rmu_sc0027177.1_g000002 Rmu_sc0027778.1_g000002 Rmu_sc0028215.1_g000001 Rmu_sc0029924.1_g000001 Rmu_sc0032552.1_g000001 Rmu_sc0036156.1_g000001 Rmu_sc0037073.1_g000001 Rmu_sc0040495.1_g000001 Rmu_ssc0000255.1_g000056 Rmu_ssc0000309.1_g000006 Rmu_ssc0000312.1_g000005 Rmu_ssc0000371.1_g000021 Rmu_ssc0000372.1_g000010 Rmu_ssc0000372.1_g000011 Rmu_ssc0000372.1_g000069 Rmu_ssc0000386.1_g000005 Rmu_ssc0000386.1_g000006 Rmu_ssc0000443.1_g000032
rosa_roxburghii Rroxscaffold_154G00447940 Rroxscaffold_1G00009660 Rroxscaffold_1G00016990 Rroxscaffold_1G00021370 Rroxscaffold_1G00037860 Rroxscaffold_2G00101680 Rroxscaffold_2G00101690 Rroxscaffold_2G00122690 Rroxscaffold_2G00122700 Rroxscaffold_2G00123340 Rroxscaffold_2G00123350 Rroxscaffold_2G00125480 Rroxscaffold_2G00136130 Rroxscaffold_2G00146590 Rroxscaffold_3G00218350 Rroxscaffold_3G00218360 Rroxscaffold_3G00218370 Rroxscaffold_3G00218380 Rroxscaffold_3G00232530 Rroxscaffold_3G00262600 Rroxscaffold_3G00263070 Rroxscaffold_4G00289030 Rroxscaffold_4G00296530 Rroxscaffold_4G00306140 Rroxscaffold_4G00306150 Rroxscaffold_4G00306380 Rroxscaffold_4G00306390 Rroxscaffold_4G00306400 Rroxscaffold_4G00309560 Rroxscaffold_4G00316600 Rroxscaffold_4G00322820 Rroxscaffold_4G00322830 Rroxscaffold_4G00324370 Rroxscaffold_4G00332350 Rroxscaffold_5G00346450 Rroxscaffold_5G00352960 Rroxscaffold_5G00352970 Rroxscaffold_5G00360310 Rroxscaffold_5G00373670 Rroxscaffold_5G00378610 Rroxscaffold_5G00378940 Rroxscaffold_6G00388240 Rroxscaffold_6G00389010 Rroxscaffold_6G00389030 Rroxscaffold_6G00399900 Rroxscaffold_6G00399910 Rroxscaffold_6G00400260 Rroxscaffold_6G00400270 Rroxscaffold_6G00400280 Rroxscaffold_7G00164100 Rroxscaffold_7G00176300 Rroxscaffold_7G00176310 Rroxscaffold_7G00177210 Rroxscaffold_7G00204300 Rroxscaffold_7G00204310 Rroxscaffold_7G00204320
rosa_rugosa Rorug06G0076500
rosa_samantha Rh1AG108400 Rh2AG377100 Rh2AG377200 Rh2BG383500 Rh2CG362800 Rh2DG399900 Rh2DG439600 Rh2DG672800 Rh6DG186300 Rh7AG351400 Rh7BG368500 Rh7CG368800 Rh7CG411100 Rh7DG424400
rosa_wichuraiana Rw1G021100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 293
AclI AACGTT 1 cut(s) 352
AcsI RAATTY 1 cut(s) 80
AfaI GTAC 1 cut(s) 65
AflII CTTAAG 1 cut(s) 194
AflIII ACRYGT 1 cut(s) 210
AgsI TTSAA 1 cut(s) 371
AluBI AGCT 1 cut(s) 59
AluI AGCT 1 cut(s) 59
Ama87I CYCGRG 2 cut(s) 15, 98
AoxI GGCC 1 cut(s) 119
ApeKI GCWGC 1 cut(s) 56
ApoI RAATTY 1 cut(s) 80
AsuII TTCGAA 1 cut(s) 326
AsuNHI GCTAGC 1 cut(s) 289
AvaI CYCGRG 2 cut(s) 15, 98
BauI CACGAG 1 cut(s) 156
BbsI GAAGAC 1 cut(s) 213
BbvI GCAGC 1 cut(s) 68
BclI TGATCA 1 cut(s) 30
BfaI CTAG 2 cut(s) 60, 290
BfrI CTTAAG 1 cut(s) 194
BisI GCNGC 1 cut(s) 57
BlsI GCNGC 1 cut(s) 58
BmeT110I CYCGRG 2 cut(s) 15, 98
BmsI GCATC 1 cut(s) 176
BmtI GCTAGC 1 cut(s) 293
BpiI GAAGAC 1 cut(s) 213
Bpu14I TTCGAA 1 cut(s) 326
BsaJI CCNNGG 1 cut(s) 336
Bse3DI GCAATG 1 cut(s) 317
BseDI CCNNGG 1 cut(s) 336
BseGI GGATG 1 cut(s) 179
BseMI GCAATG 1 cut(s) 317
BseRI GAGGAG 1 cut(s) 130
BseXI GCAGC 1 cut(s) 68
BshFI GGCC 1 cut(s) 121
BsiHKCI CYCGRG 2 cut(s) 15, 98
BslFI GGGAC 2 cut(s) 32, 105
BsmFI GGGAC 2 cut(s) 32, 105
BsnI GGCC 1 cut(s) 121
BsoBI CYCGRG 2 cut(s) 15, 98
Bsp119I TTCGAA 1 cut(s) 326
Bsp143I GATC 1 cut(s) 30
Bsp19I CCATGG 1 cut(s) 336
BspACI CCGC 1 cut(s) 293
BspANI GGCC 1 cut(s) 121
BspOI GCTAGC 1 cut(s) 293
BspT104I TTCGAA 1 cut(s) 326
BspTI CTTAAG 1 cut(s) 194
BsrDI GCAATG 1 cut(s) 317
BssECI CCNNGG 1 cut(s) 336
BssMI GATC 1 cut(s) 30
BssSI CACGAG 1 cut(s) 156
BssT1I CCWWGG 1 cut(s) 336
Bst2BI CACGAG 1 cut(s) 156
BstAFI CTTAAG 1 cut(s) 194
BstBI TTCGAA 1 cut(s) 326
BstC8I GCNNGC 2 cut(s) 191, 291
BstDEI CTNAG 1 cut(s) 67
BstDSI CCRYGG 1 cut(s) 336
BstF5I GGATG 1 cut(s) 179
BstKTI GATC 1 cut(s) 33
BstMBI GATC 1 cut(s) 30
BstMWI GCNNNNNNNGC 1 cut(s) 237
BstNSI RCATGY 2 cut(s) 193, 214
BstV1I GCAGC 1 cut(s) 68
BstV2I GAAGAC 1 cut(s) 213
BsuRI GGCC 1 cut(s) 121
BtgI CCRYGG 1 cut(s) 336
BtsCI GGATG 1 cut(s) 179
Cac8I GCNNGC 2 cut(s) 191, 291
Csp6I GTAC 1 cut(s) 64
CviAII CATG 5 cut(s) 190, 211, 221, 308, 337
CviJI RGCY 7 cut(s) 26, 59, 77, 121, 143, 231, 289
CviKI_1 RGCY 7 cut(s) 26, 59, 77, 121, 143, 231, 289
CviQI GTAC 1 cut(s) 64
DdeI CTNAG 1 cut(s) 67
DpnI GATC 1 cut(s) 32
DpnII GATC 1 cut(s) 30
Eco130I CCWWGG 1 cut(s) 336
Eco88I CYCGRG 2 cut(s) 15, 98
EcoT14I CCWWGG 1 cut(s) 336
EcoT22I ATGCAT 1 cut(s) 191
ErhI CCWWGG 1 cut(s) 336
FaeI CATG 5 cut(s) 193, 214, 224, 311, 340
FaiI YATR 9 cut(s) 35, 42, 191, 212, 222, 275, 309, 338, 386
FaqI GGGAC 2 cut(s) 32, 105
FatI CATG 5 cut(s) 189, 210, 220, 307, 336
FbaI TGATCA 1 cut(s) 30
Fnu4HI GCNGC 1 cut(s) 57
FokI GGATG 1 cut(s) 166
Fsp4HI GCNGC 1 cut(s) 57
FspBI CTAG 2 cut(s) 60, 290
GluI GCNGC 1 cut(s) 57
HaeIII GGCC 1 cut(s) 121
Hin1II CATG 5 cut(s) 193, 214, 224, 311, 340
Hpy188I TCNGA 3 cut(s) 86, 304, 382
Hpy188III TCNNGA 5 cut(s) 17, 98, 100, 183, 203
Hpy99I CGWCG 1 cut(s) 90
HpyAV CCTTC 3 cut(s) 100, 123, 156
HpyCH4IV ACGT 1 cut(s) 352
HpyCH4V TGCA 3 cut(s) 150, 189, 240
HpyF10VI GCNNNNNNNGC 1 cut(s) 237
HpyF3I CTNAG 1 cut(s) 67
HpySE526I ACGT 1 cut(s) 352
Hsp92II CATG 5 cut(s) 193, 214, 224, 311, 340
Ksp22I TGATCA 1 cut(s) 30
Kzo9I GATC 1 cut(s) 30
LmnI GCTCC 1 cut(s) 110
Lsp1109I GCAGC 1 cut(s) 68
LweI GCATC 1 cut(s) 176
MaeI CTAG 2 cut(s) 60, 290
MaeII ACGT 1 cut(s) 352
MaeIII GTNAC 2 cut(s) 200, 262
MalI GATC 1 cut(s) 32
MboI GATC 1 cut(s) 30
MboII GAAGA 4 cut(s) 115, 138, 218, 340
MluCI AATT 1 cut(s) 80
MmeI TCCRAC 2 cut(s) 109, 263
MnlI CCTC 5 cut(s) 67, 108, 111, 152, 279
Mph1103I ATGCAT 1 cut(s) 191
MseI TTAA 1 cut(s) 195
MslI CAYNNNNRTG 1 cut(s) 184
MspCI CTTAAG 1 cut(s) 194
MwoI GCNNNNNNNGC 1 cut(s) 237
NcoI CCATGG 1 cut(s) 336
NdeII GATC 1 cut(s) 30
NheI GCTAGC 1 cut(s) 289
NlaIII CATG 5 cut(s) 193, 214, 224, 311, 340
NmeAIII GCCGAG 2 cut(s) 169, 303
NmuCI GTSAC 2 cut(s) 200, 262
NsiI ATGCAT 1 cut(s) 191
NspI RCATGY 2 cut(s) 193, 214
NspV TTCGAA 1 cut(s) 326
PaeI GCATGC 1 cut(s) 193
PaeR7I CTCGAG 1 cut(s) 98
PciI ACATGT 1 cut(s) 210
PkrI GCNGC 1 cut(s) 58
PscI ACATGT 1 cut(s) 210
Psp1406I AACGTT 1 cut(s) 352
RsaI GTAC 1 cut(s) 65
RsaNI GTAC 1 cut(s) 64
RseI CAYNNNNRTG 1 cut(s) 184
SaqAI TTAA 1 cut(s) 195
SatI GCNGC 1 cut(s) 57
Sau3AI GATC 1 cut(s) 30
SetI ASST 4 cut(s) 61, 65, 355, 391
SfaNI GCATC 1 cut(s) 176
Sfr274I CTCGAG 1 cut(s) 98
SfuI TTCGAA 1 cut(s) 326
SlaI CTCGAG 1 cut(s) 98
SmiMI CAYNNNNRTG 1 cut(s) 184
SmlI CTYRAG 2 cut(s) 98, 194
SmoI CTYRAG 2 cut(s) 98, 194
SphI GCATGC 1 cut(s) 193
Sse9I AATT 1 cut(s) 80
SsiI CCGC 1 cut(s) 293
SspMI CTAG 2 cut(s) 60, 290
StyI CCWWGG 1 cut(s) 336
TaiI ACGT 1 cut(s) 355
TaqI TCGA 2 cut(s) 99, 326
TasI AATT 1 cut(s) 80
Tru1I TTAA 1 cut(s) 195
Tru9I TTAA 1 cut(s) 195
TseFI GTSAC 2 cut(s) 200, 262
TseI GCWGC 1 cut(s) 56
Tsp45I GTSAC 2 cut(s) 200, 262
TspDTI ATGAA 1 cut(s) 347
Vha464I CTTAAG 1 cut(s) 194
XapI RAATTY 1 cut(s) 80
XceI RCATGY 2 cut(s) 193, 214
XhoI CTCGAG 1 cut(s) 98
XspI CTAG 2 cut(s) 60, 290
Zsp2I ATGCAT 1 cut(s) 191
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.