Rmu_sc0005506.1_g000003

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005506.1
OG0000087
Physical Location & Seq
Forward (+)
8218 .. 9684
1467 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005506.1_g000003.1.cds

Sequence Viewer

Length: 1317 bp
atgcccacttctcaaagcaagaagtggaggagtaaagtgtttcttgctggagggcgatggcagattacaaataagaagtggcacttgacgggcacgtttcaggctatcggggaccagtcgtactcactgtctgacgttgagagaaaacgcatagccagggtgtatgccgtatggagtgaagaggagagaagcttctataggttcatccggtactccatactagataggctaggcctagggagactgcctgtgaaagtgcagaagaggaaaccccggaaaggtaaggaggacgacaagatggatgacaatcagttgatggacatgctcatgagccaaggagaagaggcccttaatattgacgttgacctggcatcgaaggctacgggtcgctcccttgaagaagttttactagagatcggtgacgaagggtacgggaaccctgatcctgcagctcccgttatccaggtcgagcagcctgttgctagtgacgtggtcactgttgctgataccggacgaggtaaggcgccagtatttggatctatgtcttgccgatctgtcgggtcagctggaagcgaggacatcttgcttcccggtgagaagagaaggttccacaggcattgccatcggagaggggataaggaaaaggttacttacactggtcgggatgttataggggcgggagccaagaggcaaaagaagagccactcgggatcggaaccgttgccctcgcttgcgctcttgtccccggccatcccagtagtccccaagaagcccatcaagaaactgctgagcgagtacggggttgtagatgagaagttcgtgtgctcgatactcgcagatctgaaagatatcgacctcgactgggtacgggcgaaggacaacactccccaggaaaatagtcgtatcgcccgggaatccatgatgcaggcactattcaatgtgtacgtgatcgacgccagtgaggaagatactctcttgaaggaagaggttagcaacctctcagggcaagtgaagtatcttcacggggagagagaaaagctagagaaagagcgggacttcttgaagaggaaggtggagtccttgactccccaggtagtcgaactggaggcggccgagaagaagatcgcggaggttgagggtgaacttgctggagcaagggatgagctagggagtgcccggggctccgagaaagaagctatgaaatctgcattgtcctggaaggcgaaggcaaagcatctggaggagagtcttccccttgaggccgtggtcgagtacaaaggctcccaagagctcatcgatatgctactcgccgcctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

438

Amino Acids

48.94

Weight (kDa)

7.08

Isoelectric Point (pI)

44.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000087)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28970 FvH4_2g03432 FvH4_2g17701 FvH4_4g10000 FvH4_4g15481 FvH4_4g15603 FvH4_6g16061 FvH4_6g25501
rosa_chinensis RchiOBHm_Chr2g0137471 RchiOBHm_Chr5g0054331
rosa_laevigata RLG00000019477 RLG00000022653 RLG00000029242
rosa_multiflora Rmu_co8012786.1_g000001 Rmu_co8165502.1_g000001 Rmu_co8383963.1_g000001 Rmu_co8428657.1_g000002 Rmu_co8441559.1_g000002 Rmu_co8493267.1_g000002 Rmu_co8512765.1_g000001 Rmu_co8522487.1_g000001 Rmu_sc0000045.1_g000034 Rmu_sc0000077.1_g000002 Rmu_sc0000177.1_g000003 Rmu_sc0000194.1_g000003 Rmu_sc0000239.1_g000073 Rmu_sc0000265.1_g000006 Rmu_sc0000271.1_g000031 Rmu_sc0000276.1_g000021 Rmu_sc0000279.1_g000008 Rmu_sc0000280.1_g000017 Rmu_sc0000315.1_g000047 Rmu_sc0000381.1_g000029 Rmu_sc0000423.1_g000013 Rmu_sc0000455.1_g000020 Rmu_sc0000596.1_g000032 Rmu_sc0000605.1_g000020 Rmu_sc0000643.1_g000006 Rmu_sc0000676.1_g000028 Rmu_sc0000698.1_g000063 Rmu_sc0000698.1_g000064 Rmu_sc0000706.1_g000030 Rmu_sc0000744.1_g000078 Rmu_sc0000744.1_g000098 Rmu_sc0000779.1_g000016 Rmu_sc0000808.1_g000006 Rmu_sc0000830.1_g000044 Rmu_sc0000842.1_g000021 Rmu_sc0000883.1_g000019 Rmu_sc0000904.1_g000013 Rmu_sc0000924.1_g000001 Rmu_sc0000959.1_g000012 Rmu_sc0001045.1_g000005 Rmu_sc0001069.1_g000021 Rmu_sc0001107.1_g000001 Rmu_sc0001155.1_g000006 Rmu_sc0001244.1_g000023 Rmu_sc0001302.1_g000017 Rmu_sc0001382.1_g000007 Rmu_sc0001393.1_g000026 Rmu_sc0001436.1_g000015 Rmu_sc0001464.1_g000021 Rmu_sc0001477.1_g000001 Rmu_sc0001483.1_g000024 Rmu_sc0001483.1_g000026 Rmu_sc0001499.1_g000020 Rmu_sc0001518.1_g000001 Rmu_sc0001520.1_g000003 Rmu_sc0001522.1_g000020 Rmu_sc0001529.1_g000008 Rmu_sc0001554.1_g000016 Rmu_sc0001563.1_g000018 Rmu_sc0001565.1_g000024 Rmu_sc0001578.1_g000014 Rmu_sc0001611.1_g000003 Rmu_sc0001700.1_g000026 Rmu_sc0001849.1_g000075 Rmu_sc0001866.1_g000011 Rmu_sc0001898.1_g000013 Rmu_sc0002029.1_g000007 Rmu_sc0002082.1_g000055 Rmu_sc0002206.1_g000032 Rmu_sc0002253.1_g000031 Rmu_sc0002264.1_g000020 Rmu_sc0002414.1_g000024 Rmu_sc0002451.1_g000063 Rmu_sc0002490.1_g000015 Rmu_sc0002539.1_g000010 Rmu_sc0002545.1_g000060 Rmu_sc0002564.1_g000020 Rmu_sc0002584.1_g000062 Rmu_sc0002669.1_g000034 Rmu_sc0002669.1_g000035 Rmu_sc0002690.1_g000010 Rmu_sc0002764.1_g000070 Rmu_sc0002786.1_g000006 Rmu_sc0002804.1_g000013 Rmu_sc0002868.1_g000015 Rmu_sc0002868.1_g000055 Rmu_sc0002889.1_g000039 Rmu_sc0002892.1_g000070 Rmu_sc0002926.1_g000001 Rmu_sc0002986.1_g000063 Rmu_sc0003032.1_g000023 Rmu_sc0003033.1_g000059 Rmu_sc0003063.1_g000022 Rmu_sc0003079.1_g000001 Rmu_sc0003092.1_g000012 Rmu_sc0003244.1_g000013 Rmu_sc0003276.1_g000004 Rmu_sc0003328.1_g000003 Rmu_sc0003352.1_g000034 Rmu_sc0003352.1_g000035 Rmu_sc0003419.1_g000038 Rmu_sc0003551.1_g000015 Rmu_sc0003669.1_g000036 Rmu_sc0003760.1_g000029 Rmu_sc0003781.1_g000021 Rmu_sc0003865.1_g000002 Rmu_sc0004012.1_g000010 Rmu_sc0004140.1_g000028 Rmu_sc0004152.1_g000002 Rmu_sc0004303.1_g000009 Rmu_sc0004336.1_g000039 Rmu_sc0004365.1_g000012 Rmu_sc0004365.1_g000013 Rmu_sc0004379.1_g000010 Rmu_sc0004529.1_g000017 Rmu_sc0004529.1_g000018 Rmu_sc0004536.1_g000025 Rmu_sc0004574.1_g000019 Rmu_sc0004602.1_g000042 Rmu_sc0004836.1_g000018 Rmu_sc0004841.1_g000037 Rmu_sc0004903.1_g000006 Rmu_sc0004977.1_g000006 Rmu_sc0005137.1_g000025 Rmu_sc0005292.1_g000031 Rmu_sc0005292.1_g000032 Rmu_sc0005353.1_g000014 Rmu_sc0005406.1_g000005 Rmu_sc0005469.1_g000016 Rmu_sc0005506.1_g000003 Rmu_sc0005507.1_g000003 Rmu_sc0005629.1_g000006 Rmu_sc0005664.1_g000033 Rmu_sc0005665.1_g000042 Rmu_sc0005685.1_g000003 Rmu_sc0006375.1_g000004 Rmu_sc0006444.1_g000020 Rmu_sc0006453.1_g000012 Rmu_sc0006676.1_g000013 Rmu_sc0006934.1_g000001 Rmu_sc0006945.1_g000001 Rmu_sc0006945.1_g000006 Rmu_sc0006954.1_g000015 Rmu_sc0007102.1_g000012 Rmu_sc0007144.1_g000007 Rmu_sc0007144.1_g000008 Rmu_sc0007230.1_g000003 Rmu_sc0007415.1_g000040 Rmu_sc0007729.1_g000001 Rmu_sc0007920.1_g000017 Rmu_sc0008058.1_g000023 Rmu_sc0008199.1_g000008 Rmu_sc0008232.1_g000010 Rmu_sc0008232.1_g000011 Rmu_sc0008336.1_g000011 Rmu_sc0008581.1_g000007 Rmu_sc0008623.1_g000002 Rmu_sc0009255.1_g000007 Rmu_sc0009479.1_g000008 Rmu_sc0009483.1_g000001 Rmu_sc0009641.1_g000001 Rmu_sc0009660.1_g000003 Rmu_sc0009978.1_g000010 Rmu_sc0010048.1_g000009 Rmu_sc0010547.1_g000007 Rmu_sc0010988.1_g000006 Rmu_sc0011148.1_g000003 Rmu_sc0011203.1_g000010 Rmu_sc0011375.1_g000004 Rmu_sc0011375.1_g000005 Rmu_sc0011559.1_g000005 Rmu_sc0012199.1_g000001 Rmu_sc0013224.1_g000005 Rmu_sc0013931.1_g000004 Rmu_sc0013931.1_g000005 Rmu_sc0013985.1_g000006 Rmu_sc0014406.1_g000001 Rmu_sc0014463.1_g000002 Rmu_sc0016218.1_g000005 Rmu_sc0019345.1_g000002 Rmu_sc0019655.1_g000001 Rmu_sc0020833.1_g000001 Rmu_sc0024204.1_g000001 Rmu_sc0024309.1_g000001 Rmu_sc0027177.1_g000002 Rmu_sc0027778.1_g000002 Rmu_sc0028215.1_g000001 Rmu_sc0029924.1_g000001 Rmu_sc0032552.1_g000001 Rmu_sc0036156.1_g000001 Rmu_sc0037073.1_g000001 Rmu_sc0040495.1_g000001 Rmu_ssc0000255.1_g000056 Rmu_ssc0000309.1_g000006 Rmu_ssc0000312.1_g000005 Rmu_ssc0000371.1_g000021 Rmu_ssc0000372.1_g000010 Rmu_ssc0000372.1_g000011 Rmu_ssc0000372.1_g000069 Rmu_ssc0000386.1_g000005 Rmu_ssc0000386.1_g000006 Rmu_ssc0000443.1_g000032
rosa_roxburghii Rroxscaffold_154G00447940 Rroxscaffold_1G00009660 Rroxscaffold_1G00016990 Rroxscaffold_1G00021370 Rroxscaffold_1G00037860 Rroxscaffold_2G00101680 Rroxscaffold_2G00101690 Rroxscaffold_2G00122690 Rroxscaffold_2G00122700 Rroxscaffold_2G00123340 Rroxscaffold_2G00123350 Rroxscaffold_2G00125480 Rroxscaffold_2G00136130 Rroxscaffold_2G00146590 Rroxscaffold_3G00218350 Rroxscaffold_3G00218360 Rroxscaffold_3G00218370 Rroxscaffold_3G00218380 Rroxscaffold_3G00232530 Rroxscaffold_3G00262600 Rroxscaffold_3G00263070 Rroxscaffold_4G00289030 Rroxscaffold_4G00296530 Rroxscaffold_4G00306140 Rroxscaffold_4G00306150 Rroxscaffold_4G00306380 Rroxscaffold_4G00306390 Rroxscaffold_4G00306400 Rroxscaffold_4G00309560 Rroxscaffold_4G00316600 Rroxscaffold_4G00322820 Rroxscaffold_4G00322830 Rroxscaffold_4G00324370 Rroxscaffold_4G00332350 Rroxscaffold_5G00346450 Rroxscaffold_5G00352960 Rroxscaffold_5G00352970 Rroxscaffold_5G00360310 Rroxscaffold_5G00373670 Rroxscaffold_5G00378610 Rroxscaffold_5G00378940 Rroxscaffold_6G00388240 Rroxscaffold_6G00389010 Rroxscaffold_6G00389030 Rroxscaffold_6G00399900 Rroxscaffold_6G00399910 Rroxscaffold_6G00400260 Rroxscaffold_6G00400270 Rroxscaffold_6G00400280 Rroxscaffold_7G00164100 Rroxscaffold_7G00176300 Rroxscaffold_7G00176310 Rroxscaffold_7G00177210 Rroxscaffold_7G00204300 Rroxscaffold_7G00204310 Rroxscaffold_7G00204320
rosa_rugosa Rorug06G0076500
rosa_samantha Rh1AG108400 Rh2AG377100 Rh2AG377200 Rh2BG383500 Rh2CG362800 Rh2DG399900 Rh2DG439600 Rh2DG672800 Rh6DG186300 Rh7AG351400 Rh7BG368500 Rh7CG368800 Rh7CG411100 Rh7DG424400
rosa_wichuraiana Rw1G021100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 523
AccB7I CCANNNNNTGG 1 cut(s) 533
AccBSI CCGCTC 1 cut(s) 1051
AccII CGCG 1 cut(s) 1127
AciI CCGC 5 cut(s) 677, 1051, 1109, 1127, 1311
AclWI GGATC 3 cut(s) 437, 544, 718
AcoI YGGCCR 2 cut(s) 747, 1110
AcyI GRCGYC 2 cut(s) 524, 954
AfaI GTAC 7 cut(s) 122, 212, 431, 797, 867, 944, 1274
AfiI CCNNNNNNNGG 3 cut(s) 278, 533, 862
AgsI TTSAA 4 cut(s) 398, 937, 979, 1063
AjiI CACGTC 1 cut(s) 490
AjnI CCWGG 6 cut(s) 155, 366, 462, 888, 1089, 1214
AluBI AGCT 7 cut(s) 192, 452, 566, 1039, 1165, 1196, 1291
AluI AGCT 7 cut(s) 192, 452, 566, 1039, 1165, 1196, 1291
Alw21I GWGCWC 2 cut(s) 827, 1293
Alw26I GTCTC 1 cut(s) 235
AlwI GGATC 3 cut(s) 437, 544, 718
Ama87I CYCGRG 3 cut(s) 706, 909, 1176
AoxI GGCC 5 cut(s) 232, 345, 747, 1110, 1260
ApeKI GCWGC 2 cut(s) 449, 472
AspA2I CCTAGG 1 cut(s) 235
AspLEI GCGC 2 cut(s) 526, 736
AspS9I GGNCC 2 cut(s) 112, 346
AsuC2I CCSGG 7 cut(s) 274, 591, 746, 910, 911, 1177, 1178
AsuHPI GGTGA 3 cut(s) 431, 605, 1151
AvaI CYCGRG 3 cut(s) 706, 909, 1176
AvaII GGWCC 1 cut(s) 112
AvrII CCTAGG 1 cut(s) 235
BaeGI GKGCMC 2 cut(s) 95, 1177
BanI GGYRCC 1 cut(s) 523
BanII GRGCYC 2 cut(s) 1184, 1293
BarI GAAGNNNNNNTAC 2 cut(s) 390, 422
BbsI GAAGAC 1 cut(s) 1241
Bbv12I GWGCWC 2 cut(s) 827, 1293
BbvI GCAGC 2 cut(s) 461, 484
BccI CCATC 6 cut(s) 51, 292, 310, 630, 758, 782
BceAI ACGGC 2 cut(s) 152, 1247
BcgI CGANNNNNNTGC 2 cut(s) 605, 639
BciT130I CCWGG 6 cut(s) 157, 368, 464, 890, 1091, 1216
BcnI CCSGG 7 cut(s) 274, 591, 746, 910, 911, 1177, 1178
BcoDI GTCTC 1 cut(s) 235
BfaI CTAG 8 cut(s) 221, 230, 236, 410, 483, 1040, 1166, 1315
BfmI CTRYAG 2 cut(s) 196, 447
BfoI RGCGCY 1 cut(s) 527
BglII AGATCT 1 cut(s) 838
BisI GCNGC 4 cut(s) 450, 473, 1110, 1311
BlnI CCTAGG 1 cut(s) 235
BlpI GCTNAGC 1 cut(s) 788
BlsI GCNGC 4 cut(s) 451, 474, 1111, 1312
Bme18I GGWCC 1 cut(s) 112
BmeT110I CYCGRG 3 cut(s) 706, 909, 1176
BmgBI CACGTC 1 cut(s) 490
BmgT120I GGNCC 2 cut(s) 112, 346
BmiI GGNNCC 8 cut(s) 113, 437, 525, 608, 682, 717, 1183, 1282
BmrI ACTGGG 2 cut(s) 749, 871
BmsI GCATC 3 cut(s) 380, 912, 1243
BmuI ACTGGG 2 cut(s) 749, 871
BpiI GAAGAC 1 cut(s) 1241
BpmI CTGGAG 4 cut(s) 69, 1124, 1170, 1259
Bpu1102I GCTNAGC 1 cut(s) 788
BpuEI CTTGAG 1 cut(s) 1277
BpuMI CCSGG 7 cut(s) 274, 591, 746, 910, 911, 1177, 1178
Bsa29I ATCGAT 1 cut(s) 1296
BsaAI YACGTR 1 cut(s) 946
BsaBI GATNNNNATC 1 cut(s) 306
BsaHI GRCGYC 2 cut(s) 524, 954
BsaWI WCCGGW 2 cut(s) 207, 509
BsaXI ACNNNNNCTCC 2 cut(s) 1265, 1295
Bsc4I CCNNNNNNNGG 3 cut(s) 278, 533, 862
Bse1I ACTGG 7 cut(s) 115, 527, 661, 755, 866, 957, 1107
Bse3DI GCAATG 1 cut(s) 616
Bse8I GATNNNNATC 1 cut(s) 306
BseBI CCWGG 6 cut(s) 157, 368, 464, 890, 1091, 1216
BseCI ATCGAT 1 cut(s) 1296
BseGI GGATG 5 cut(s) 204, 307, 670, 750, 1165
BseJI GATNNNNATC 1 cut(s) 306
BseLI CCNNNNNNNGG 3 cut(s) 278, 533, 862
BseMI GCAATG 1 cut(s) 616
BseMII CTCAG 2 cut(s) 779, 1014
BseNI ACTGG 7 cut(s) 115, 527, 661, 755, 866, 957, 1107
BseRI GAGGAG 3 cut(s) 43, 197, 1256
BseSI GKGCMC 2 cut(s) 95, 1177
BseX3I CGGCCG 1 cut(s) 1110
BseXI GCAGC 2 cut(s) 461, 484
BsgI GTGCAG 1 cut(s) 278
Bsh1236I CGCG 1 cut(s) 1127
Bsh1285I CGRYCG 1 cut(s) 1113
BshFI GGCC 5 cut(s) 234, 347, 749, 1112, 1262
BshNI GGYRCC 1 cut(s) 523
BshVI ATCGAT 1 cut(s) 1296
BsiEI CGRYCG 1 cut(s) 1113
BsiHKAI GWGCWC 2 cut(s) 827, 1293
BsiHKCI CYCGRG 3 cut(s) 706, 909, 1176
BsiSI CCGG 7 cut(s) 208, 274, 510, 591, 746, 910, 1177
BslFI GGGAC 4 cut(s) 125, 727, 746, 1067
BslI CCNNNNNNNGG 3 cut(s) 278, 533, 862
BsmAI GTCTC 1 cut(s) 235
BsmFI GGGAC 4 cut(s) 125, 727, 746, 1067
BsnI GGCC 5 cut(s) 234, 347, 749, 1112, 1262
BsoBI CYCGRG 3 cut(s) 706, 909, 1176
Bsp1286I GDGCHC 5 cut(s) 95, 827, 1177, 1184, 1293
Bsp143I GATC 8 cut(s) 414, 442, 536, 551, 710, 838, 948, 1122
Bsp1720I GCTNAGC 1 cut(s) 788
BspACI CCGC 5 cut(s) 677, 1051, 1109, 1127, 1311
BspANI GGCC 5 cut(s) 234, 347, 749, 1112, 1262
BspCNI CTCAG 2 cut(s) 780, 1013
BspDI ATCGAT 1 cut(s) 1296
BspFNI CGCG 1 cut(s) 1127
BspHI TCATGA 1 cut(s) 327
BspLI GGNNCC 8 cut(s) 113, 437, 525, 608, 682, 717, 1183, 1282
BspMAI CTGCAG 1 cut(s) 451
BspPI GGATC 3 cut(s) 437, 544, 718
BspQI GCTCTTC 1 cut(s) 692
BspT107I GGYRCC 1 cut(s) 523
BsrBI CCGCTC 1 cut(s) 1051
BsrDI GCAATG 1 cut(s) 616
BsrI ACTGG 7 cut(s) 115, 527, 661, 755, 866, 957, 1107
BssMI GATC 8 cut(s) 414, 442, 536, 551, 710, 838, 948, 1122
BssNI GRCGYC 2 cut(s) 524, 954
BssT1I CCWWGG 2 cut(s) 235, 334
Bst2UI CCWGG 6 cut(s) 157, 368, 464, 890, 1091, 1216
Bst4CI ACNGT 3 cut(s) 129, 499, 720
Bst6I CTCTTC 7 cut(s) 174, 257, 336, 593, 692, 978, 1058
BstACI GRCGYC 2 cut(s) 524, 954
BstBAI YACGTR 1 cut(s) 946
BstC8I GCNNGC 2 cut(s) 732, 927
BstDEI CTNAG 2 cut(s) 788, 1000
BstDSI CCRYGG 1 cut(s) 1263
BstF5I GGATG 5 cut(s) 204, 307, 670, 750, 1165
BstFNI CGCG 1 cut(s) 1127
BstH2I RGCGCY 1 cut(s) 527
BstHHI GCGC 2 cut(s) 526, 736
BstKTI GATC 8 cut(s) 417, 445, 539, 554, 713, 841, 951, 1125
BstMAI GTCTC 1 cut(s) 235
BstMBI GATC 8 cut(s) 414, 442, 536, 551, 710, 838, 948, 1122
BstMCI CGRYCG 1 cut(s) 1113
BstMWI GCNNNNNNNGC 1 cut(s) 377
BstNI CCWGG 6 cut(s) 157, 368, 464, 890, 1091, 1216
BstNSI RCATGY 1 cut(s) 325
BstSFI CTRYAG 2 cut(s) 196, 447
BstSLI GKGCMC 2 cut(s) 95, 1177
BstUI CGCG 1 cut(s) 1127
BstV1I GCAGC 2 cut(s) 461, 484
BstV2I GAAGAC 1 cut(s) 1241
BstX2I RGATCY 2 cut(s) 536, 838
BstYI RGATCY 2 cut(s) 536, 838
BstZI CGGCCG 1 cut(s) 1110
Bsu15I ATCGAT 1 cut(s) 1296
BsuRI GGCC 5 cut(s) 234, 347, 749, 1112, 1262
BsuTUI ATCGAT 1 cut(s) 1296
BtgI CCRYGG 1 cut(s) 1263
BtgZI GCGATG 1 cut(s) 70
BtrI CACGTC 1 cut(s) 490
BtsCI GGATG 5 cut(s) 204, 307, 670, 750, 1165
BtsIMutI CAGTG 4 cut(s) 125, 495, 654, 964
Cac8I GCNNGC 2 cut(s) 732, 927
CciI TCATGA 1 cut(s) 327
CfoI GCGC 2 cut(s) 526, 736
Cfr13I GGNCC 2 cut(s) 112, 346
Cfr9I CCCGGG 2 cut(s) 909, 1176
ClaI ATCGAT 1 cut(s) 1296
CseI GACGC 1 cut(s) 962
Csp6I GTAC 7 cut(s) 121, 211, 430, 796, 866, 943, 1273
CspCI CAANNNNNGTGG 2 cut(s) 599, 634
CviAII CATG 3 cut(s) 322, 328, 919
CviQI GTAC 7 cut(s) 121, 211, 430, 796, 866, 943, 1273
DdeI CTNAG 2 cut(s) 788, 1000
DinI GGCGCC 1 cut(s) 525
DpnI GATC 8 cut(s) 416, 444, 538, 553, 712, 840, 950, 1124
DpnII GATC 8 cut(s) 414, 442, 536, 551, 710, 838, 948, 1122
EaeI YGGCCR 2 cut(s) 747, 1110
EagI CGGCCG 1 cut(s) 1110
Eam1104I CTCTTC 7 cut(s) 174, 257, 336, 593, 692, 978, 1058
EarI CTCTTC 7 cut(s) 174, 257, 336, 593, 692, 978, 1058
Ecl136II GAGCTC 1 cut(s) 1291
EclXI CGGCCG 1 cut(s) 1110
Eco130I CCWWGG 2 cut(s) 235, 334
Eco147I AGGCCT 1 cut(s) 234
Eco24I GRGCYC 2 cut(s) 1184, 1293
Eco32I GATATC 1 cut(s) 850
Eco47I GGWCC 1 cut(s) 112
Eco52I CGGCCG 1 cut(s) 1110
Eco53kI GAGCTC 1 cut(s) 1291
Eco88I CYCGRG 3 cut(s) 706, 909, 1176
EcoICRI GAGCTC 1 cut(s) 1291
EcoO109I RGGNCCY 1 cut(s) 346
EcoRII CCWGG 6 cut(s) 155, 366, 462, 888, 1089, 1214
EcoRV GATATC 1 cut(s) 850
EcoT14I CCWWGG 2 cut(s) 235, 334
EcoT38I GRGCYC 2 cut(s) 1184, 1293
EgeI GGCGCC 1 cut(s) 525
EheI GGCGCC 1 cut(s) 525
ErhI CCWWGG 2 cut(s) 235, 334
FaeI CATG 3 cut(s) 325, 331, 922
FalI AAGNNNNNCTT 6 cut(s) 27, 59, 68, 100, 333, 365
FaqI GGGAC 4 cut(s) 125, 727, 746, 1067
FatI CATG 3 cut(s) 321, 327, 918
FauI CCCGC 2 cut(s) 670, 1044
Fnu4HI GCNGC 4 cut(s) 450, 473, 1110, 1311
FokI GGATG 5 cut(s) 191, 314, 677, 737, 1172
FriOI GRGCYC 2 cut(s) 1184, 1293
Fsp4HI GCNGC 4 cut(s) 450, 473, 1110, 1311
FspBI CTAG 8 cut(s) 221, 230, 236, 410, 483, 1040, 1166, 1315
GlaI GCGC 2 cut(s) 525, 735
GluI GCNGC 4 cut(s) 450, 473, 1110, 1311
GsuI CTGGAG 4 cut(s) 69, 1124, 1170, 1259
HaeII RGCGCY 1 cut(s) 527
HaeIII GGCC 5 cut(s) 234, 347, 749, 1112, 1262
HapII CCGG 7 cut(s) 208, 274, 510, 591, 746, 910, 1177
HgaI GACGC 1 cut(s) 962
HhaI GCGC 2 cut(s) 526, 736
Hin1I GRCGYC 2 cut(s) 524, 954
Hin1II CATG 3 cut(s) 325, 331, 922
Hin6I GCGC 2 cut(s) 524, 734
HinP1I GCGC 2 cut(s) 524, 734
HincII GTYRAC 1 cut(s) 364
HindII GTYRAC 1 cut(s) 364
HindIII AAGCTT 1 cut(s) 190
HinfI GANTC 4 cut(s) 914, 1076, 1084, 1246
HpaII CCGG 7 cut(s) 208, 274, 510, 591, 746, 910, 1177
HphI GGTGA 3 cut(s) 431, 605, 1151
Hpy166II GTNNAC 3 cut(s) 364, 943, 1142
Hpy188I TCNGA 5 cut(s) 133, 627, 715, 843, 1186
Hpy188III TCNNGA 7 cut(s) 328, 662, 708, 778, 976, 1060, 1238
Hpy8I GTNNAC 3 cut(s) 364, 943, 1142
Hpy99I CGWCG 1 cut(s) 956
HpyAV CCTTC 8 cut(s) 370, 419, 597, 868, 973, 1063, 1213, 1219
HpyCH4III ACNGT 3 cut(s) 129, 499, 720
HpyCH4IV ACGT 5 cut(s) 95, 135, 360, 489, 945
HpyCH4V TGCA 4 cut(s) 259, 449, 925, 1208
HpyF10VI GCNNNNNNNGC 1 cut(s) 377
HpyF3I CTNAG 2 cut(s) 788, 1000
HpySE526I ACGT 5 cut(s) 95, 135, 360, 489, 945
Hsp92I GRCGYC 2 cut(s) 524, 954
Hsp92II CATG 3 cut(s) 325, 331, 922
HspAI GCGC 2 cut(s) 524, 734
KasI GGCGCC 1 cut(s) 523
Kzo9I GATC 8 cut(s) 414, 442, 536, 551, 710, 838, 948, 1122
LguI GCTCTTC 1 cut(s) 692
LmnI GCTCC 6 cut(s) 395, 457, 680, 1151, 1187, 1286
Lsp1109I GCAGC 2 cut(s) 461, 484
LweI GCATC 3 cut(s) 380, 912, 1243
MaeI CTAG 8 cut(s) 221, 230, 236, 410, 483, 1040, 1166, 1315
MaeII ACGT 5 cut(s) 95, 135, 360, 489, 945
MaeIII GTNAC 4 cut(s) 419, 485, 493, 646
MalI GATC 8 cut(s) 416, 444, 538, 553, 712, 840, 950, 1124
MbiI CCGCTC 1 cut(s) 1051
MboI GATC 8 cut(s) 414, 442, 536, 551, 710, 838, 948, 1122
MflI RGATCY 2 cut(s) 536, 838
MhlI GDGCHC 5 cut(s) 95, 827, 1177, 1184, 1293
Mly113I GGCGCC 1 cut(s) 524
MlyI GAGTC 3 cut(s) 1078, 1085, 1255
MseI TTAA 1 cut(s) 351
MslI CAYNNNNRTG 2 cut(s) 326, 1298
MspA1I CMGCKG 1 cut(s) 566
MspI CCGG 7 cut(s) 208, 274, 510, 591, 746, 910, 1177
MvaI CCWGG 6 cut(s) 157, 368, 464, 890, 1091, 1216
MvnI CGCG 1 cut(s) 1127
MwoI GCNNNNNNNGC 1 cut(s) 377
NarI GGCGCC 1 cut(s) 524
NciI CCSGG 7 cut(s) 274, 591, 746, 910, 911, 1177, 1178
NdeII GATC 8 cut(s) 414, 442, 536, 551, 710, 838, 948, 1122
NlaIII CATG 3 cut(s) 325, 331, 922
NlaIV GGNNCC 8 cut(s) 113, 437, 525, 608, 682, 717, 1183, 1282
NmeAIII GCCGAG 1 cut(s) 1138
NmuCI GTSAC 3 cut(s) 419, 485, 493
NspI RCATGY 1 cut(s) 325
PagI TCATGA 1 cut(s) 327
PceI AGGCCT 1 cut(s) 234
PciSI GCTCTTC 1 cut(s) 692
PfeI GAWTC 1 cut(s) 914
PflFI GACNNNGTC 1 cut(s) 491
PflMI CCANNNNNTGG 1 cut(s) 533
PfoI TCCNGGA 1 cut(s) 1214
PkrI GCNGC 4 cut(s) 451, 474, 1111, 1312
PleI GAGTC 3 cut(s) 1078, 1084, 1254
PluTI GGCGCC 1 cut(s) 527
PpsI GAGTC 3 cut(s) 1078, 1084, 1254
Ppu21I YACGTR 1 cut(s) 946
Psp124BI GAGCTC 1 cut(s) 1293
Psp6I CCWGG 6 cut(s) 155, 366, 462, 888, 1089, 1214
PspGI CCWGG 6 cut(s) 155, 366, 462, 888, 1089, 1214
PspN4I GGNNCC 8 cut(s) 113, 437, 525, 608, 682, 717, 1183, 1282
PspPI GGNCC 2 cut(s) 112, 346
PstI CTGCAG 1 cut(s) 451
PsuI RGATCY 2 cut(s) 536, 838
PsyI GACNNNGTC 1 cut(s) 491
PvuII CAGCTG 1 cut(s) 566
RsaI GTAC 7 cut(s) 122, 212, 431, 797, 867, 944, 1274
RsaNI GTAC 7 cut(s) 121, 211, 430, 796, 866, 943, 1273
RseI CAYNNNNRTG 2 cut(s) 326, 1298
SacI GAGCTC 1 cut(s) 1293
SapI GCTCTTC 1 cut(s) 692
SaqAI TTAA 1 cut(s) 351
SatI GCNGC 4 cut(s) 450, 473, 1110, 1311
Sau3AI GATC 8 cut(s) 414, 442, 536, 551, 710, 838, 948, 1122
Sau96I GGNCC 2 cut(s) 112, 346
SchI GAGTC 3 cut(s) 1078, 1085, 1255
SduI GDGCHC 5 cut(s) 95, 827, 1177, 1184, 1293
SfaNI GCATC 3 cut(s) 380, 912, 1243
SfcI CTRYAG 2 cut(s) 196, 447
SfoI GGCGCC 1 cut(s) 525
SinI GGWCC 1 cut(s) 112
SmaI CCCGGG 2 cut(s) 911, 1178
SmiMI CAYNNNNRTG 2 cut(s) 326, 1298
SmlI CTYRAG 1 cut(s) 1256
SmoI CTYRAG 1 cut(s) 1256
SseBI AGGCCT 1 cut(s) 234
SsiI CCGC 5 cut(s) 677, 1051, 1109, 1127, 1311
SspDI GGCGCC 1 cut(s) 523
SspI AATATT 1 cut(s) 355
SspMI CTAG 8 cut(s) 221, 230, 236, 410, 483, 1040, 1166, 1315
SstI GAGCTC 1 cut(s) 1293
StuI AGGCCT 1 cut(s) 234
StyI CCWWGG 2 cut(s) 235, 334
TaaI ACNGT 3 cut(s) 129, 499, 720
TaiI ACGT 5 cut(s) 98, 138, 363, 492, 948
TaqI TCGA 9 cut(s) 374, 468, 827, 852, 858, 951, 1098, 1269, 1296
TatI WGTACW 1 cut(s) 1272
TauI GCSGC 2 cut(s) 1112, 1313
TfiI GAWTC 1 cut(s) 914
Tru1I TTAA 1 cut(s) 351
Tru9I TTAA 1 cut(s) 351
TscAI CASTG 4 cut(s) 132, 502, 661, 964
TseFI GTSAC 3 cut(s) 419, 485, 493
TseI GCWGC 2 cut(s) 449, 472
Tsp45I GTSAC 3 cut(s) 419, 485, 493
TspDTI ATGAA 2 cut(s) 193, 1214
TspMI CCCGGG 2 cut(s) 909, 1176
TspRI CASTG 4 cut(s) 132, 502, 661, 964
Tth111I GACNNNGTC 1 cut(s) 491
Van91I CCANNNNNTGG 1 cut(s) 533
VpaK11BI GGWCC 1 cut(s) 112
XceI RCATGY 1 cut(s) 325
XmaI CCCGGG 2 cut(s) 909, 1176
XmaJI CCTAGG 1 cut(s) 235
XspI CTAG 8 cut(s) 221, 230, 236, 410, 483, 1040, 1166, 1315
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.