Rmu_sc0000676.1_g000028

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000676.1
OG0000087
Physical Location & Seq
Forward (+)
99089 .. 102359
3271 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000676.1_g000028.1.cds

Sequence Viewer

Length: 2325 bp
atgagggttgagtccctggtaccggatggggtggagagcggagctggctctgatactcgatggggtagaaaatttgagcctccggtacccaatggggtagagagagggcttggctctgatacccgatggggtaagaaatttgagcctcaaatacccaatggggtagagagagggcttggctctgatacccgatggggtaggaaatttgagcctccggtacccaatgggactgggttgtgcaataaatgcccgtcctttctccttccaaagctcgagaaatggggagaggcgtgggacacgtgtagcgatcctatggttgagggcttttcggtttcgacggccctgatgtattggagattgaatttaagagggaaaccgattgttttccctcactttcatatagcgagatttgaggtccccggtaccgtagttaggatggaatcagaagccaggggtggggatacgggatcgtcgtaccagtcttctgccaggcaagctgaagtggatatcgatcggtacttaggccgagtagatcaattagcagagaacacggggtcgtcgactggggtgttctcggagagcagtgaggagtccgacgatggtgagagtgagggtggatctgcggaggccccggtagtcacggtggcaattcccgaggtcataccgaagccgaggtatacacttgagattgggagcgtatgcgacgaacccgggagaagtatgactatgaaggagataatcgatatgcgactgaagtggggaataccggatgcgatggagcttaggcctctcaaggatggagagatggccgcgaatcctgccccggggtgggtggcgctgcacgagaataagctccaccaagggttatcgctaccgctgccccggtgcctacagtatctgctgcggatgctgaacctgtcaccggggcagctgaccccgaatgccattcgtcaaatatacagtatgatggccatgtgggacttgtgtcaacaagggtggccctccataaatgaattctgcgcggtacaccgggtactatactcaaggaagcagtcttgtgcgggtacggttacgtttgccgctagggattacgaaccacttgttaccgacatgccttccccgatgagcaaaaggtggaggagcaaagtattcctagctggggggtggtggcaaattaaaaataggaagtggcagctgactggtaccttccaagcgatcggggaccagtcctatactctatcagaagtagaaaggaagaggatagcccggggtcgaaaggtacaaggatcagttgaagaaacccttctggagatcaccgatgagggatatggtgaacctgatctcgacgctcccgtgacccacgtcgtgcagccctctttggcctacgttatcacgatagatgacaccgggatgggaaaggtaccggccccagtgcctatttcctctcgttccactgggagcgatgaggcactgcttcctggtgagaagaaaagatcccataggcaccggcatcgaagtgataagcaggaggtgacgtatactggccgggatgttcagggtttcggtgcgaagaggcagaagaaagatcacccgggaccagagtcgtcgccttcgcttggcttgttgtctcctgccattccggtaatccccaagaagcccatcaagcagctgttgagtgagtacggggttgccgatgaaaagttcgtgctgtccatgcttggtgacctgaaggatattgacctcgaccgggttcgggccaaggacaatacgccccaagagaatcgccgtcttgcccaggaatccatgatgcgggcactcttcaatgtgtacgccattgacgccagcgaggaagatactcatctgaaggaggaggttagcaatctttccgggcaggtgaagtatcttcatggcgagaaggccaagctggagaaggagagggactcattgaaggctgagatggccgtcgctaagcagcggatcgcggagcttgagggtgaagtctctgaggcgcgggaagaggtgaagaacgctcgggactccgagaaaaaagctgcagagtttgccgtgtcatggaaggagaaggcagaccacctggaggatcgccctcccgtggagaggcacgaggccgtggaggagtacaagtcctccgaagagctcatcactatgctaactgctgcccaagataaggctgtcgtcatgaagttcaaggagtgggtggcggccggatacttggatgaagctaaattcaggcggggtctcctggaaaaaaagaagaaagatcgggaggcggcggtcaagtctggtgccggtggcgagcggttgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_28

Protein Analysis

774

Amino Acids

86.3

Weight (kDa)

6.09

Isoelectric Point (pI)

42.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000087)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28970 FvH4_2g03432 FvH4_2g17701 FvH4_4g10000 FvH4_4g15481 FvH4_4g15603 FvH4_6g16061 FvH4_6g25501
rosa_chinensis RchiOBHm_Chr2g0137471 RchiOBHm_Chr5g0054331
rosa_laevigata RLG00000019477 RLG00000022653 RLG00000029242
rosa_multiflora Rmu_co8012786.1_g000001 Rmu_co8165502.1_g000001 Rmu_co8383963.1_g000001 Rmu_co8428657.1_g000002 Rmu_co8441559.1_g000002 Rmu_co8493267.1_g000002 Rmu_co8512765.1_g000001 Rmu_co8522487.1_g000001 Rmu_sc0000045.1_g000034 Rmu_sc0000077.1_g000002 Rmu_sc0000177.1_g000003 Rmu_sc0000194.1_g000003 Rmu_sc0000239.1_g000073 Rmu_sc0000265.1_g000006 Rmu_sc0000271.1_g000031 Rmu_sc0000276.1_g000021 Rmu_sc0000279.1_g000008 Rmu_sc0000280.1_g000017 Rmu_sc0000315.1_g000047 Rmu_sc0000381.1_g000029 Rmu_sc0000423.1_g000013 Rmu_sc0000455.1_g000020 Rmu_sc0000596.1_g000032 Rmu_sc0000605.1_g000020 Rmu_sc0000643.1_g000006 Rmu_sc0000676.1_g000028 Rmu_sc0000698.1_g000063 Rmu_sc0000698.1_g000064 Rmu_sc0000706.1_g000030 Rmu_sc0000744.1_g000078 Rmu_sc0000744.1_g000098 Rmu_sc0000779.1_g000016 Rmu_sc0000808.1_g000006 Rmu_sc0000830.1_g000044 Rmu_sc0000842.1_g000021 Rmu_sc0000883.1_g000019 Rmu_sc0000904.1_g000013 Rmu_sc0000924.1_g000001 Rmu_sc0000959.1_g000012 Rmu_sc0001045.1_g000005 Rmu_sc0001069.1_g000021 Rmu_sc0001107.1_g000001 Rmu_sc0001155.1_g000006 Rmu_sc0001244.1_g000023 Rmu_sc0001302.1_g000017 Rmu_sc0001382.1_g000007 Rmu_sc0001393.1_g000026 Rmu_sc0001436.1_g000015 Rmu_sc0001464.1_g000021 Rmu_sc0001477.1_g000001 Rmu_sc0001483.1_g000024 Rmu_sc0001483.1_g000026 Rmu_sc0001499.1_g000020 Rmu_sc0001518.1_g000001 Rmu_sc0001520.1_g000003 Rmu_sc0001522.1_g000020 Rmu_sc0001529.1_g000008 Rmu_sc0001554.1_g000016 Rmu_sc0001563.1_g000018 Rmu_sc0001565.1_g000024 Rmu_sc0001578.1_g000014 Rmu_sc0001611.1_g000003 Rmu_sc0001700.1_g000026 Rmu_sc0001849.1_g000075 Rmu_sc0001866.1_g000011 Rmu_sc0001898.1_g000013 Rmu_sc0002029.1_g000007 Rmu_sc0002082.1_g000055 Rmu_sc0002206.1_g000032 Rmu_sc0002253.1_g000031 Rmu_sc0002264.1_g000020 Rmu_sc0002414.1_g000024 Rmu_sc0002451.1_g000063 Rmu_sc0002490.1_g000015 Rmu_sc0002539.1_g000010 Rmu_sc0002545.1_g000060 Rmu_sc0002564.1_g000020 Rmu_sc0002584.1_g000062 Rmu_sc0002669.1_g000034 Rmu_sc0002669.1_g000035 Rmu_sc0002690.1_g000010 Rmu_sc0002764.1_g000070 Rmu_sc0002786.1_g000006 Rmu_sc0002804.1_g000013 Rmu_sc0002868.1_g000015 Rmu_sc0002868.1_g000055 Rmu_sc0002889.1_g000039 Rmu_sc0002892.1_g000070 Rmu_sc0002926.1_g000001 Rmu_sc0002986.1_g000063 Rmu_sc0003032.1_g000023 Rmu_sc0003033.1_g000059 Rmu_sc0003063.1_g000022 Rmu_sc0003079.1_g000001 Rmu_sc0003092.1_g000012 Rmu_sc0003244.1_g000013 Rmu_sc0003276.1_g000004 Rmu_sc0003328.1_g000003 Rmu_sc0003352.1_g000034 Rmu_sc0003352.1_g000035 Rmu_sc0003419.1_g000038 Rmu_sc0003551.1_g000015 Rmu_sc0003669.1_g000036 Rmu_sc0003760.1_g000029 Rmu_sc0003781.1_g000021 Rmu_sc0003865.1_g000002 Rmu_sc0004012.1_g000010 Rmu_sc0004140.1_g000028 Rmu_sc0004152.1_g000002 Rmu_sc0004303.1_g000009 Rmu_sc0004336.1_g000039 Rmu_sc0004365.1_g000012 Rmu_sc0004365.1_g000013 Rmu_sc0004379.1_g000010 Rmu_sc0004529.1_g000017 Rmu_sc0004529.1_g000018 Rmu_sc0004536.1_g000025 Rmu_sc0004574.1_g000019 Rmu_sc0004602.1_g000042 Rmu_sc0004836.1_g000018 Rmu_sc0004841.1_g000037 Rmu_sc0004903.1_g000006 Rmu_sc0004977.1_g000006 Rmu_sc0005137.1_g000025 Rmu_sc0005292.1_g000031 Rmu_sc0005292.1_g000032 Rmu_sc0005353.1_g000014 Rmu_sc0005406.1_g000005 Rmu_sc0005469.1_g000016 Rmu_sc0005506.1_g000003 Rmu_sc0005507.1_g000003 Rmu_sc0005629.1_g000006 Rmu_sc0005664.1_g000033 Rmu_sc0005665.1_g000042 Rmu_sc0005685.1_g000003 Rmu_sc0006375.1_g000004 Rmu_sc0006444.1_g000020 Rmu_sc0006453.1_g000012 Rmu_sc0006676.1_g000013 Rmu_sc0006934.1_g000001 Rmu_sc0006945.1_g000001 Rmu_sc0006945.1_g000006 Rmu_sc0006954.1_g000015 Rmu_sc0007102.1_g000012 Rmu_sc0007144.1_g000007 Rmu_sc0007144.1_g000008 Rmu_sc0007230.1_g000003 Rmu_sc0007415.1_g000040 Rmu_sc0007729.1_g000001 Rmu_sc0007920.1_g000017 Rmu_sc0008058.1_g000023 Rmu_sc0008199.1_g000008 Rmu_sc0008232.1_g000010 Rmu_sc0008232.1_g000011 Rmu_sc0008336.1_g000011 Rmu_sc0008581.1_g000007 Rmu_sc0008623.1_g000002 Rmu_sc0009255.1_g000007 Rmu_sc0009479.1_g000008 Rmu_sc0009483.1_g000001 Rmu_sc0009641.1_g000001 Rmu_sc0009660.1_g000003 Rmu_sc0009978.1_g000010 Rmu_sc0010048.1_g000009 Rmu_sc0010547.1_g000007 Rmu_sc0010988.1_g000006 Rmu_sc0011148.1_g000003 Rmu_sc0011203.1_g000010 Rmu_sc0011375.1_g000004 Rmu_sc0011375.1_g000005 Rmu_sc0011559.1_g000005 Rmu_sc0012199.1_g000001 Rmu_sc0013224.1_g000005 Rmu_sc0013931.1_g000004 Rmu_sc0013931.1_g000005 Rmu_sc0013985.1_g000006 Rmu_sc0014406.1_g000001 Rmu_sc0014463.1_g000002 Rmu_sc0016218.1_g000005 Rmu_sc0019345.1_g000002 Rmu_sc0019655.1_g000001 Rmu_sc0020833.1_g000001 Rmu_sc0024204.1_g000001 Rmu_sc0024309.1_g000001 Rmu_sc0027177.1_g000002 Rmu_sc0027778.1_g000002 Rmu_sc0028215.1_g000001 Rmu_sc0029924.1_g000001 Rmu_sc0032552.1_g000001 Rmu_sc0036156.1_g000001 Rmu_sc0037073.1_g000001 Rmu_sc0040495.1_g000001 Rmu_ssc0000255.1_g000056 Rmu_ssc0000309.1_g000006 Rmu_ssc0000312.1_g000005 Rmu_ssc0000371.1_g000021 Rmu_ssc0000372.1_g000010 Rmu_ssc0000372.1_g000011 Rmu_ssc0000372.1_g000069 Rmu_ssc0000386.1_g000005 Rmu_ssc0000386.1_g000006 Rmu_ssc0000443.1_g000032
rosa_roxburghii Rroxscaffold_154G00447940 Rroxscaffold_1G00009660 Rroxscaffold_1G00016990 Rroxscaffold_1G00021370 Rroxscaffold_1G00037860 Rroxscaffold_2G00101680 Rroxscaffold_2G00101690 Rroxscaffold_2G00122690 Rroxscaffold_2G00122700 Rroxscaffold_2G00123340 Rroxscaffold_2G00123350 Rroxscaffold_2G00125480 Rroxscaffold_2G00136130 Rroxscaffold_2G00146590 Rroxscaffold_3G00218350 Rroxscaffold_3G00218360 Rroxscaffold_3G00218370 Rroxscaffold_3G00218380 Rroxscaffold_3G00232530 Rroxscaffold_3G00262600 Rroxscaffold_3G00263070 Rroxscaffold_4G00289030 Rroxscaffold_4G00296530 Rroxscaffold_4G00306140 Rroxscaffold_4G00306150 Rroxscaffold_4G00306380 Rroxscaffold_4G00306390 Rroxscaffold_4G00306400 Rroxscaffold_4G00309560 Rroxscaffold_4G00316600 Rroxscaffold_4G00322820 Rroxscaffold_4G00322830 Rroxscaffold_4G00324370 Rroxscaffold_4G00332350 Rroxscaffold_5G00346450 Rroxscaffold_5G00352960 Rroxscaffold_5G00352970 Rroxscaffold_5G00360310 Rroxscaffold_5G00373670 Rroxscaffold_5G00378610 Rroxscaffold_5G00378940 Rroxscaffold_6G00388240 Rroxscaffold_6G00389010 Rroxscaffold_6G00389030 Rroxscaffold_6G00399900 Rroxscaffold_6G00399910 Rroxscaffold_6G00400260 Rroxscaffold_6G00400270 Rroxscaffold_6G00400280 Rroxscaffold_7G00164100 Rroxscaffold_7G00176300 Rroxscaffold_7G00176310 Rroxscaffold_7G00177210 Rroxscaffold_7G00204300 Rroxscaffold_7G00204310 Rroxscaffold_7G00204320
rosa_rugosa Rorug06G0076500
rosa_samantha Rh1AG108400 Rh2AG377100 Rh2AG377200 Rh2BG383500 Rh2CG362800 Rh2DG399900 Rh2DG439600 Rh2DG672800 Rh6DG186300 Rh7AG351400 Rh7BG368500 Rh7CG368800 Rh7CG411100 Rh7DG424400
rosa_wichuraiana Rw1G021100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1882
Acc36I ACCTGC 1 cut(s) 1882
Acc65I GGTACC 6 cut(s) 19, 85, 217, 422, 1202, 1420
AccB1I GGYRCC 9 cut(s) 19, 85, 217, 422, 885, 1202, 1420, 1503, 2303
AccBSI CCGCTC 2 cut(s) 39, 2317
AccI GTMKAC 3 cut(s) 560, 677, 1538
AccII CGCG 4 cut(s) 812, 1022, 1982, 2011
AclWI GGATC 7 cut(s) 302, 475, 625, 1294, 1488, 1985, 2106
AcoI YGGCCR 5 cut(s) 807, 969, 1543, 1959, 2220
AcsI RAATTY 6 cut(s) 71, 137, 203, 361, 1013, 2243
AcuI CTGAAG 4 cut(s) 519, 773, 1748, 1883
AcvI CACGTG 1 cut(s) 300
AcyI GRCGYC 1 cut(s) 1839
AdeI CACNNNGTG 1 cut(s) 1366
AflIII ACRYGT 2 cut(s) 297, 299
AgsI TTSAA 5 cut(s) 361, 1295, 1822, 1948, 2206
AjiI CACGTC 1 cut(s) 1363
AjnI CCWGG 7 cut(s) 15, 449, 488, 1477, 1794, 2091, 2259
Alw21I GWGCWC 1 cut(s) 2157
Alw26I GTCTC 3 cut(s) 1632, 2005, 2261
AlwI GGATC 7 cut(s) 302, 475, 625, 1294, 1488, 1985, 2106
AlwNI CAGNNNCTG 1 cut(s) 898
Ama87I CYCGRG 7 cut(s) 272, 653, 710, 823, 1266, 1591, 2031
ApoI RAATTY 6 cut(s) 71, 137, 203, 361, 1013, 2243
Asp700I GAANNNNTTC 1 cut(s) 1302
Asp718I GGTACC 6 cut(s) 19, 85, 217, 422, 1202, 1420
AspLEI GCGC 3 cut(s) 838, 1022, 2011
AspS9I GGNCC 8 cut(s) 340, 415, 628, 999, 1222, 1426, 1595, 1755
AvaI CYCGRG 7 cut(s) 272, 653, 710, 823, 1266, 1591, 2031
AvaII GGWCC 3 cut(s) 415, 1222, 1595
BaeGI GKGCMC 1 cut(s) 1816
BaeI ACNNNNGTAYC 2 cut(s) 414, 447
BalI TGGCCA 1 cut(s) 971
BanI GGYRCC 9 cut(s) 19, 85, 217, 422, 885, 1202, 1420, 1503, 2303
BanII GRGCYC 1 cut(s) 2157
BauI CACGAG 2 cut(s) 842, 2120
BbrPI CACGTG 1 cut(s) 300
BbsI GAAGAC 1 cut(s) 474
Bbv12I GWGCWC 1 cut(s) 2157
BceAI ACGGC 5 cut(s) 354, 1770, 1946, 2048, 2111
BcgI CGANNNNNNTGC 2 cut(s) 1493, 1527
BciT130I CCWGG 7 cut(s) 17, 451, 490, 1479, 1796, 2093, 2261
BciVI GTATCC 2 cut(s) 454, 2219
BcoDI GTCTC 3 cut(s) 1632, 2005, 2261
BfaI CTAG 2 cut(s) 1083, 1154
BfmI CTRYAG 2 cut(s) 890, 2052
BfoI RGCGCY 1 cut(s) 839
BfuAI ACCTGC 1 cut(s) 1882
BfuI GTATCC 2 cut(s) 454, 2219
BlpI GCTNAGC 1 cut(s) 1968
Bme18I GGWCC 3 cut(s) 415, 1222, 1595
BmeT110I CYCGRG 7 cut(s) 272, 653, 710, 823, 1266, 1591, 2031
BmgBI CACGTC 1 cut(s) 1363
BmgT120I GGNCC 8 cut(s) 340, 415, 628, 999, 1222, 1426, 1595, 1755
BmrI ACTGGG 4 cut(s) 240, 573, 1424, 1464
BmsI GCATC 4 cut(s) 760, 897, 1519, 1797
BmuI ACTGGG 4 cut(s) 240, 573, 1424, 1464
BoxI GACNNNNGTC 3 cut(s) 984, 1361, 1600
BpiI GAAGAC 1 cut(s) 474
BplI GAGNNNNNCTC 2 cut(s) 1925, 1957
BpmI CTGGAG 3 cut(s) 1328, 1946, 2114
Bpu10I CCTNAGC 1 cut(s) 782
Bpu1102I GCTNAGC 1 cut(s) 1968
BpuEI CTTGAG 4 cut(s) 704, 776, 1027, 2009
Bsa29I ATCGAT 2 cut(s) 510, 741
BsaAI YACGTR 1 cut(s) 300
BsaBI GATNNNNATC 2 cut(s) 510, 1857
BsaHI GRCGYC 1 cut(s) 1839
BsaI GGTCTC 1 cut(s) 2261
BsaWI WCCGGW 5 cut(s) 22, 82, 214, 766, 1639
BsaXI ACNNNNNCTCC 6 cut(s) 1520, 1550, 2126, 2129, 2156, 2159
Bse118I RCCGGY 3 cut(s) 1423, 1506, 2306
Bse1I ACTGG 8 cut(s) 235, 478, 568, 1204, 1225, 1430, 1459, 1546
Bse8I GATNNNNATC 2 cut(s) 510, 1857
BseBI CCWGG 7 cut(s) 17, 451, 490, 1479, 1796, 2093, 2261
BseCI ATCGAT 2 cut(s) 510, 741
BseGI GGATG 8 cut(s) 31, 441, 775, 802, 912, 1416, 1555, 2239
BseJI GATNNNNATC 2 cut(s) 510, 1857
BseMII CTCAG 2 cut(s) 1944, 1995
BseNI ACTGG 8 cut(s) 235, 478, 568, 1204, 1225, 1430, 1459, 1546
BseRI GAGGAG 4 cut(s) 602, 1153, 1883, 2147
BseSI GKGCMC 1 cut(s) 1816
BseX3I CGGCCG 1 cut(s) 2220
BseYI CCCAGC 1 cut(s) 1157
BsgI GTGCAG 2 cut(s) 824, 1388
Bsh1236I CGCG 4 cut(s) 812, 1022, 1982, 2011
Bsh1285I CGRYCG 4 cut(s) 514, 1218, 1747, 2223
BshNI GGYRCC 9 cut(s) 19, 85, 217, 422, 885, 1202, 1420, 1503, 2303
BshVI ATCGAT 2 cut(s) 510, 741
BsiEI CGRYCG 4 cut(s) 514, 1218, 1747, 2223
BsiHKAI GWGCWC 1 cut(s) 2157
BsiHKCI CYCGRG 7 cut(s) 272, 653, 710, 823, 1266, 1591, 2031
BslFI GGGAC 8 cut(s) 241, 308, 401, 992, 1235, 1608, 1952, 2048
BsmAI GTCTC 3 cut(s) 1632, 2005, 2261
BsmFI GGGAC 8 cut(s) 241, 308, 401, 992, 1235, 1608, 1952, 2048
BsmI GAATGC 1 cut(s) 946
Bso31I GGTCTC 1 cut(s) 2261
BsoBI CYCGRG 7 cut(s) 272, 653, 710, 823, 1266, 1591, 2031
Bsp1286I GDGCHC 2 cut(s) 1816, 2157
Bsp1720I GCTNAGC 1 cut(s) 1968
BspCNI CTCAG 2 cut(s) 1945, 1996
BspDI ATCGAT 2 cut(s) 510, 741
BspFNI CGCG 4 cut(s) 812, 1022, 1982, 2011
BspHI TCATGA 1 cut(s) 2196
BspMAI CTGCAG 1 cut(s) 2056
BspMI ACCTGC 1 cut(s) 1882
BspPI GGATC 7 cut(s) 302, 475, 625, 1294, 1488, 1985, 2106
BspQI GCTCTTC 1 cut(s) 2145
BspT107I GGYRCC 9 cut(s) 19, 85, 217, 422, 885, 1202, 1420, 1503, 2303
BspTNI GGTCTC 1 cut(s) 2261
BsrBI CCGCTC 2 cut(s) 39, 2317
BsrFI RCCGGY 3 cut(s) 1423, 1506, 2306
BsrI ACTGG 8 cut(s) 235, 478, 568, 1204, 1225, 1430, 1459, 1546
BssAI RCCGGY 3 cut(s) 1423, 1506, 2306
BssNAI GTATAC 2 cut(s) 678, 1539
BssNI GRCGYC 1 cut(s) 1839
BssSI CACGAG 2 cut(s) 842, 2120
BssT1I CCWWGG 2 cut(s) 859, 1758
Bst1107I GTATAC 2 cut(s) 678, 1539
Bst2BI CACGAG 2 cut(s) 842, 2120
Bst2UI CCWGG 7 cut(s) 17, 451, 490, 1479, 1796, 2093, 2261
Bst4CI ACNGT 5 cut(s) 427, 643, 894, 962, 1069
Bst6I CTCTTC 5 cut(s) 1250, 1565, 1823, 2010, 2145
BstACI GRCGYC 1 cut(s) 1839
BstAPI GCANNNNNTGC 2 cut(s) 246, 2060
BstBAI YACGTR 1 cut(s) 300
BstC8I GCNNGC 5 cut(s) 46, 495, 1812, 1843, 2315
BstDEI CTNAG 5 cut(s) 520, 782, 1953, 1968, 2004
BstDSI CCRYGG 2 cut(s) 2109, 2127
BstEII GGTNACC 1 cut(s) 1721
BstF5I GGATG 8 cut(s) 31, 441, 775, 802, 912, 1416, 1555, 2239
BstFNI CGCG 4 cut(s) 812, 1022, 1982, 2011
BstH2I RGCGCY 1 cut(s) 839
BstHHI GCGC 3 cut(s) 838, 1022, 2011
BstMAI GTCTC 3 cut(s) 1632, 2005, 2261
BstMCI CGRYCG 4 cut(s) 514, 1218, 1747, 2223
BstNI CCWGG 7 cut(s) 17, 451, 490, 1479, 1796, 2093, 2261
BstNSI RCATGY 1 cut(s) 1114
BstPAI GACNNNNGTC 3 cut(s) 984, 1361, 1600
BstPI GGTNACC 1 cut(s) 1721
BstSFI CTRYAG 2 cut(s) 890, 2052
BstSLI GKGCMC 1 cut(s) 1816
BstUI CGCG 4 cut(s) 812, 1022, 1982, 2011
BstV2I GAAGAC 1 cut(s) 474
BstX2I RGATCY 2 cut(s) 617, 1493
BstYI RGATCY 2 cut(s) 617, 1493
BstZ17I GTATAC 2 cut(s) 678, 1539
BstZI CGGCCG 1 cut(s) 2220
Bsu15I ATCGAT 2 cut(s) 510, 741
BsuI GTATCC 2 cut(s) 454, 2219
BsuTUI ATCGAT 2 cut(s) 510, 741
BtgI CCRYGG 2 cut(s) 2109, 2127
BtgZI GCGATG 2 cut(s) 788, 1476
BtrI CACGTC 1 cut(s) 1363
BtsCI GGATG 8 cut(s) 31, 441, 775, 802, 912, 1416, 1555, 2239
BtsI GCAGTG 2 cut(s) 589, 1469
BtsIMutI CAGTG 4 cut(s) 589, 1437, 1452, 1469
BveI ACCTGC 1 cut(s) 1882
Cac8I GCNNGC 5 cut(s) 46, 495, 1812, 1843, 2315
CaiI CAGNNNCTG 1 cut(s) 898
CciI TCATGA 1 cut(s) 2196
CfoI GCGC 3 cut(s) 838, 1022, 2011
Cfr10I RCCGGY 3 cut(s) 1423, 1506, 2306
Cfr13I GGNCC 8 cut(s) 340, 415, 628, 999, 1222, 1426, 1595, 1755
Cfr9I CCCGGG 4 cut(s) 710, 823, 1266, 1591
ClaI ATCGAT 2 cut(s) 510, 741
CseI GACGC 2 cut(s) 1355, 1847
CspCI CAANNNNNGTGG 2 cut(s) 977, 1012
CviAII CATG 7 cut(s) 973, 1111, 1714, 1804, 1907, 2070, 2197
DdeI CTNAG 5 cut(s) 520, 782, 1953, 1968, 2004
DraIII CACNNNGTG 1 cut(s) 1366
EaeI YGGCCR 5 cut(s) 807, 969, 1543, 1959, 2220
EagI CGGCCG 1 cut(s) 2220
Eam1104I CTCTTC 5 cut(s) 1250, 1565, 1823, 2010, 2145
EarI CTCTTC 5 cut(s) 1250, 1565, 1823, 2010, 2145
Ecl136II GAGCTC 1 cut(s) 2155
EclXI CGGCCG 1 cut(s) 2220
Eco130I CCWWGG 2 cut(s) 859, 1758
Eco147I AGGCCT 1 cut(s) 787
Eco24I GRGCYC 1 cut(s) 2157
Eco31I GGTCTC 1 cut(s) 2261
Eco32I GATATC 1 cut(s) 508
Eco47I GGWCC 3 cut(s) 415, 1222, 1595
Eco52I CGGCCG 1 cut(s) 2220
Eco53kI GAGCTC 1 cut(s) 2155
Eco57I CTGAAG 4 cut(s) 519, 773, 1748, 1883
Eco72I CACGTG 1 cut(s) 300
Eco88I CYCGRG 7 cut(s) 272, 653, 710, 823, 1266, 1591, 2031
Eco91I GGTNACC 1 cut(s) 1721
EcoICRI GAGCTC 1 cut(s) 2155
EcoO109I RGGNCCY 2 cut(s) 415, 628
EcoO65I GGTNACC 1 cut(s) 1721
EcoRI GAATTC 1 cut(s) 1013
EcoRII CCWGG 7 cut(s) 15, 449, 488, 1477, 1794, 2091, 2259
EcoRV GATATC 1 cut(s) 508
EcoT14I CCWWGG 2 cut(s) 859, 1758
EcoT38I GRGCYC 1 cut(s) 2157
ErhI CCWWGG 2 cut(s) 859, 1758
FaeI CATG 7 cut(s) 976, 1114, 1717, 1807, 1910, 2073, 2200
FalI AAGNNNNNCTT 2 cut(s) 1287, 1319
FaqI GGGAC 8 cut(s) 241, 308, 401, 992, 1235, 1608, 1952, 2048
FatI CATG 7 cut(s) 972, 1110, 1713, 1803, 1906, 2069, 2196
FauI CCCGC 4 cut(s) 1054, 1803, 2004, 2244
FblI GTMKAC 3 cut(s) 560, 677, 1538
FokI GGATG 8 cut(s) 38, 448, 782, 809, 919, 1423, 1562, 2246
FriOI GRGCYC 1 cut(s) 2157
FspBI CTAG 2 cut(s) 1083, 1154
GlaI GCGC 3 cut(s) 837, 1021, 2010
GsaI CCCAGC 1 cut(s) 1161
GsuI CTGGAG 3 cut(s) 1328, 1946, 2114
HaeII RGCGCY 1 cut(s) 839
HgaI GACGC 2 cut(s) 1355, 1847
HhaI GCGC 3 cut(s) 838, 1022, 2011
Hin1I GRCGYC 1 cut(s) 1839
Hin1II CATG 7 cut(s) 976, 1114, 1717, 1807, 1910, 2073, 2200
Hin6I GCGC 3 cut(s) 836, 1020, 2009
HinP1I GCGC 3 cut(s) 836, 1020, 2009
HincII GTYRAC 2 cut(s) 561, 989
HindII GTYRAC 2 cut(s) 561, 989
HinfI GANTC 9 cut(s) 11, 440, 590, 814, 1601, 1780, 1799, 1940, 2036
Hpy166II GTNNAC 7 cut(s) 561, 678, 989, 1027, 1334, 1539, 1828
Hpy188III TCNNGA 8 cut(s) 274, 653, 1307, 1343, 1393, 2033, 2197, 2282
Hpy8I GTNNAC 7 cut(s) 561, 678, 989, 1027, 1334, 1539, 1828
Hpy99I CGWCG 9 cut(s) 340, 475, 562, 599, 707, 1349, 1367, 1609, 1967
HpyCH4III ACNGT 5 cut(s) 427, 643, 894, 962, 1069
HpyCH4IV ACGT 5 cut(s) 299, 1073, 1362, 1386, 1535
HpyCH4V TGCA 4 cut(s) 240, 841, 1369, 2054
HpyF3I CTNAG 5 cut(s) 520, 782, 1953, 1968, 2004
HpySE526I ACGT 5 cut(s) 299, 1073, 1362, 1386, 1535
Hsp92I GRCGYC 1 cut(s) 1839
Hsp92II CATG 7 cut(s) 976, 1114, 1717, 1807, 1910, 2073, 2200
HspAI GCGC 3 cut(s) 836, 1020, 2009
KpnI GGTACC 6 cut(s) 23, 89, 221, 426, 1206, 1424
LguI GCTCTTC 1 cut(s) 2145
LmnI GCTCC 8 cut(s) 41, 693, 778, 858, 1140, 1354, 1458, 1984
LweI GCATC 4 cut(s) 760, 897, 1519, 1797
MaeI CTAG 2 cut(s) 1083, 1154
MaeII ACGT 5 cut(s) 299, 1073, 1362, 1386, 1535
MaeIII GTNAC 7 cut(s) 637, 918, 1069, 1102, 1354, 1531, 1721
MbiI CCGCTC 2 cut(s) 39, 2317
MflI RGATCY 2 cut(s) 617, 1493
MhlI GDGCHC 2 cut(s) 1816, 2157
MlsI TGGCCA 1 cut(s) 971
MluCI AATT 9 cut(s) 71, 137, 203, 361, 536, 648, 1013, 1173, 2243
MluNI TGGCCA 1 cut(s) 971
MlyI GAGTC 5 cut(s) 20, 599, 1610, 1934, 2030
MmeI TCCRAC 1 cut(s) 618
Mox20I TGGCCA 1 cut(s) 971
MroXI GAANNNNTTC 1 cut(s) 1302
MscI TGGCCA 1 cut(s) 971
MseI TTAA 2 cut(s) 365, 1176
MslI CAYNNNNRTG 3 cut(s) 1409, 1515, 2162
Msp20I TGGCCA 1 cut(s) 971
MspA1I CMGCKG 5 cut(s) 877, 931, 1195, 1669, 1975
Mva1269I GAATGC 1 cut(s) 946
MvaI CCWGG 7 cut(s) 17, 451, 490, 1479, 1796, 2093, 2261
MvnI CGCG 4 cut(s) 812, 1022, 1982, 2011
NlaIII CATG 7 cut(s) 976, 1114, 1717, 1807, 1910, 2073, 2200
NmeAIII GCCGAG 2 cut(s) 551, 696
NmuCI GTSAC 5 cut(s) 637, 918, 1354, 1531, 1721
NspI RCATGY 1 cut(s) 1114
PaeR7I CTCGAG 1 cut(s) 272
PagI TCATGA 1 cut(s) 2196
PaqCI CACCTGC 1 cut(s) 1882
PceI AGGCCT 1 cut(s) 787
PciSI GCTCTTC 1 cut(s) 2145
PcsI WCGNNNNNNNCGW 4 cut(s) 470, 557, 1350, 1689
PctI GAATGC 1 cut(s) 946
PdmI GAANNNNTTC 1 cut(s) 1302
PfeI GAWTC 4 cut(s) 440, 814, 1780, 1799
PfoI TCCNGGA 1 cut(s) 2259
Ple19I CGATCG 2 cut(s) 514, 1218
PleI GAGTC 5 cut(s) 19, 598, 1609, 1934, 2030
PmaCI CACGTG 1 cut(s) 300
PmlI CACGTG 1 cut(s) 300
PpsI GAGTC 5 cut(s) 19, 598, 1609, 1934, 2030
Ppu21I YACGTR 1 cut(s) 300
PpuMI RGGWCCY 1 cut(s) 415
PshAI GACNNNNGTC 3 cut(s) 984, 1361, 1600
Psp124BI GAGCTC 1 cut(s) 2157
Psp5II RGGWCCY 1 cut(s) 415
Psp6I CCWGG 7 cut(s) 15, 449, 488, 1477, 1794, 2091, 2259
PspCI CACGTG 1 cut(s) 300
PspEI GGTNACC 1 cut(s) 1721
PspFI CCCAGC 1 cut(s) 1157
PspGI CCWGG 7 cut(s) 15, 449, 488, 1477, 1794, 2091, 2259
PspPI GGNCC 8 cut(s) 340, 415, 628, 999, 1222, 1426, 1595, 1755
PspPPI RGGWCCY 1 cut(s) 415
PstI CTGCAG 1 cut(s) 2056
PstNI CAGNNNCTG 1 cut(s) 898
PsuI RGATCY 2 cut(s) 617, 1493
PvuI CGATCG 2 cut(s) 514, 1218
PvuII CAGCTG 3 cut(s) 931, 1195, 1669
RseI CAYNNNNRTG 3 cut(s) 1409, 1515, 2162
SacI GAGCTC 1 cut(s) 2157
SalI GTCGAC 1 cut(s) 559
SapI GCTCTTC 1 cut(s) 2145
SaqAI TTAA 2 cut(s) 365, 1176
Sau96I GGNCC 8 cut(s) 340, 415, 628, 999, 1222, 1426, 1595, 1755
SchI GAGTC 5 cut(s) 20, 599, 1610, 1934, 2030
SduI GDGCHC 2 cut(s) 1816, 2157
SfaNI GCATC 4 cut(s) 760, 897, 1519, 1797
SfcI CTRYAG 2 cut(s) 890, 2052
Sfr274I CTCGAG 1 cut(s) 272
SinI GGWCC 3 cut(s) 415, 1222, 1595
SlaI CTCGAG 1 cut(s) 272
SmaI CCCGGG 4 cut(s) 712, 825, 1268, 1593
SmiMI CAYNNNNRTG 3 cut(s) 1409, 1515, 2162
SmlI CTYRAG 5 cut(s) 272, 683, 791, 1042, 1988
SmoI CTYRAG 5 cut(s) 272, 683, 791, 1042, 1988
Sse9I AATT 9 cut(s) 71, 137, 203, 361, 536, 648, 1013, 1173, 2243
SseBI AGGCCT 1 cut(s) 787
SspMI CTAG 2 cut(s) 1083, 1154
SstI GAGCTC 1 cut(s) 2157
StuI AGGCCT 1 cut(s) 787
StyI CCWWGG 2 cut(s) 859, 1758
TaaI ACNGT 5 cut(s) 427, 643, 894, 962, 1069
TaiI ACGT 5 cut(s) 302, 1076, 1365, 1389, 1538
TasI AATT 9 cut(s) 71, 137, 203, 361, 536, 648, 1013, 1173, 2243
TatI WGTACW 1 cut(s) 2136
TauI GCSGC 4 cut(s) 812, 1082, 2222, 2291
TfiI GAWTC 4 cut(s) 440, 814, 1780, 1799
Tru1I TTAA 2 cut(s) 365, 1176
Tru9I TTAA 2 cut(s) 365, 1176
TscAI CASTG 4 cut(s) 589, 1437, 1459, 1476
TseFI GTSAC 5 cut(s) 637, 918, 1354, 1531, 1721
Tsp45I GTSAC 5 cut(s) 637, 918, 1354, 1531, 1721
TspDTI ATGAA 7 cut(s) 386, 743, 1026, 1710, 1895, 2213, 2250
TspMI CCCGGG 4 cut(s) 710, 823, 1266, 1591
TspRI CASTG 4 cut(s) 589, 1437, 1459, 1476
VpaK11BI GGWCC 3 cut(s) 415, 1222, 1595
XapI RAATTY 6 cut(s) 71, 137, 203, 361, 1013, 2243
XceI RCATGY 1 cut(s) 1114
XhoI CTCGAG 1 cut(s) 272
XmaI CCCGGG 4 cut(s) 710, 823, 1266, 1591
XmiI GTMKAC 3 cut(s) 560, 677, 1538
XmnI GAANNNNTTC 1 cut(s) 1302
XspI CTAG 2 cut(s) 1083, 1154
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.