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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 684 |
| AccB1I | GGYRCC | 1 cut(s) | 684 |
| AciI | CCGC | 3 cut(s) | 190, 674, 682 |
| AclWI | GGATC | 1 cut(s) | 470 |
| AcsI | RAATTY | 1 cut(s) | 483 |
| AfaI | GTAC | 3 cut(s) | 179, 358, 686 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 22, 76, 538 |
| AflII | CTTAAG | 1 cut(s) | 737 |
| AflIII | ACRYGT | 1 cut(s) | 201 |
| AgsI | TTSAA | 3 cut(s) | 314, 515, 545 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 535 |
| AjnI | CCWGG | 1 cut(s) | 227 |
| AluBI | AGCT | 3 cut(s) | 143, 289, 518 |
| AluI | AGCT | 3 cut(s) | 143, 289, 518 |
| Alw26I | GTCTC | 2 cut(s) | 454, 704 |
| AlwI | GGATC | 1 cut(s) | 470 |
| Ama87I | CYCGRG | 2 cut(s) | 270, 377 |
| ApoI | RAATTY | 1 cut(s) | 483 |
| Asp718I | GGTACC | 1 cut(s) | 684 |
| AspLEI | GCGC | 1 cut(s) | 508 |
| AsuHPI | GGTGA | 2 cut(s) | 344, 485 |
| AsuII | TTCGAA | 1 cut(s) | 559 |
| AvaI | CYCGRG | 2 cut(s) | 270, 377 |
| BanI | GGYRCC | 1 cut(s) | 684 |
| BceAI | ACGGC | 1 cut(s) | 401 |
| BciT130I | CCWGG | 1 cut(s) | 229 |
| BcoDI | GTCTC | 2 cut(s) | 454, 704 |
| BfaI | CTAG | 3 cut(s) | 144, 509, 552 |
| BfoI | RGCGCY | 1 cut(s) | 509 |
| BfrI | CTTAAG | 1 cut(s) | 737 |
| Bme1390I | CCNGG | 1 cut(s) | 229 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 535 |
| BmeT110I | CYCGRG | 2 cut(s) | 270, 377 |
| BmiI | GGNNCC | 1 cut(s) | 686 |
| BmrFI | CCNGG | 1 cut(s) | 229 |
| BmsI | GCATC | 1 cut(s) | 201 |
| Bpu10I | CCTNAGC | 1 cut(s) | 644 |
| Bpu14I | TTCGAA | 1 cut(s) | 559 |
| BsaI | GGTCTC | 1 cut(s) | 454 |
| BsaJI | CCNNGG | 1 cut(s) | 269 |
| BsaXI | ACNNNNNCTCC | 5 cut(s) | 17, 47, 328, 358, 759 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 22, 76, 538 |
| BseBI | CCWGG | 1 cut(s) | 229 |
| BseDI | CCNNGG | 1 cut(s) | 269 |
| BseGI | GGATG | 4 cut(s) | 36, 37, 130, 224 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 22, 76, 538 |
| BseRI | GAGGAG | 1 cut(s) | 258 |
| Bsh1285I | CGRYCG | 1 cut(s) | 536 |
| BshNI | GGYRCC | 1 cut(s) | 684 |
| BsiEI | CGRYCG | 1 cut(s) | 536 |
| BsiHKCI | CYCGRG | 2 cut(s) | 270, 377 |
| BsiWI | CGTACG | 1 cut(s) | 356 |
| BslFI | GGGAC | 2 cut(s) | 52, 169 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 22, 76, 538 |
| BsmAI | GTCTC | 2 cut(s) | 454, 704 |
| BsmFI | GGGAC | 2 cut(s) | 52, 169 |
| BsmI | GAATGC | 2 cut(s) | 281, 753 |
| Bso31I | GGTCTC | 1 cut(s) | 454 |
| BsoBI | CYCGRG | 2 cut(s) | 270, 377 |
| Bsp119I | TTCGAA | 1 cut(s) | 559 |
| Bsp143I | GATC | 3 cut(s) | 408, 475, 533 |
| BspACI | CCGC | 3 cut(s) | 190, 674, 682 |
| BspLI | GGNNCC | 1 cut(s) | 686 |
| BspPI | GGATC | 1 cut(s) | 470 |
| BspT104I | TTCGAA | 1 cut(s) | 559 |
| BspT107I | GGYRCC | 1 cut(s) | 684 |
| BspTI | CTTAAG | 1 cut(s) | 737 |
| BspTNI | GGTCTC | 1 cut(s) | 454 |
| BssECI | CCNNGG | 1 cut(s) | 269 |
| BssMI | GATC | 3 cut(s) | 408, 475, 533 |
| Bst2UI | CCWGG | 1 cut(s) | 229 |
| Bst4CI | ACNGT | 2 cut(s) | 356, 473 |
| BstAFI | CTTAAG | 1 cut(s) | 737 |
| BstBI | TTCGAA | 1 cut(s) | 559 |
| BstC8I | GCNNGC | 1 cut(s) | 287 |
| BstDEI | CTNAG | 1 cut(s) | 644 |
| BstF5I | GGATG | 4 cut(s) | 36, 37, 130, 224 |
| BstH2I | RGCGCY | 1 cut(s) | 509 |
| BstHHI | GCGC | 1 cut(s) | 508 |
| BstKTI | GATC | 3 cut(s) | 411, 478, 536 |
| BstMAI | GTCTC | 2 cut(s) | 454, 704 |
| BstMBI | GATC | 3 cut(s) | 408, 475, 533 |
| BstMCI | CGRYCG | 1 cut(s) | 536 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 159, 301, 592 |
| BstNI | CCWGG | 1 cut(s) | 229 |
| BstNSI | RCATGY | 1 cut(s) | 205 |
| BstSCI | CCNGG | 1 cut(s) | 227 |
| BtsCI | GGATG | 4 cut(s) | 36, 37, 130, 224 |
| Cac8I | GCNNGC | 1 cut(s) | 287 |
| CfoI | GCGC | 1 cut(s) | 508 |
| CseI | GACGC | 1 cut(s) | 630 |
| Csp6I | GTAC | 3 cut(s) | 178, 357, 685 |
| CviJI | RGCY | 8 cut(s) | 143, 289, 310, 442, 518, 565, 655, 771 |
| CviKI_1 | RGCY | 8 cut(s) | 143, 289, 310, 442, 518, 565, 655, 771 |
| CviQI | GTAC | 3 cut(s) | 178, 357, 685 |
| DdeI | CTNAG | 1 cut(s) | 644 |
| DpnI | GATC | 3 cut(s) | 410, 477, 535 |
| DpnII | GATC | 3 cut(s) | 408, 475, 533 |
| DriI | GACNNNNNGTC | 1 cut(s) | 535 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 535 |
| Eco31I | GGTCTC | 1 cut(s) | 454 |
| Eco88I | CYCGRG | 2 cut(s) | 270, 377 |
| EcoRII | CCWGG | 1 cut(s) | 227 |
| EcoT22I | ATGCAT | 2 cut(s) | 116, 140 |
| FaqI | GGGAC | 2 cut(s) | 52, 169 |
| FauI | CCCGC | 1 cut(s) | 197 |
| FokI | GGATG | 4 cut(s) | 24, 43, 117, 211 |
| FspBI | CTAG | 3 cut(s) | 144, 509, 552 |
| GlaI | GCGC | 1 cut(s) | 507 |
| HaeII | RGCGCY | 1 cut(s) | 509 |
| HgaI | GACGC | 1 cut(s) | 630 |
| HhaI | GCGC | 1 cut(s) | 508 |
| Hin6I | GCGC | 1 cut(s) | 506 |
| HinP1I | GCGC | 1 cut(s) | 506 |
| HincII | GTYRAC | 2 cut(s) | 615, 719 |
| HindII | GTYRAC | 2 cut(s) | 615, 719 |
| HinfI | GANTC | 2 cut(s) | 373, 493 |
| HpaI | GTTAAC | 1 cut(s) | 615 |
| HphI | GGTGA | 2 cut(s) | 344, 485 |
| Hpy166II | GTNNAC | 3 cut(s) | 615, 633, 719 |
| Hpy188III | TCNNGA | 5 cut(s) | 196, 272, 379, 497, 527 |
| Hpy8I | GTNNAC | 3 cut(s) | 615, 633, 719 |
| Hpy99I | CGWCG | 2 cut(s) | 541, 624 |
| HpyAV | CCTTC | 4 cut(s) | 327, 333, 453, 555 |
| HpyCH4III | ACNGT | 2 cut(s) | 356, 473 |
| HpyCH4V | TGCA | 4 cut(s) | 63, 114, 138, 586 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 159, 301, 592 |
| HpyF3I | CTNAG | 1 cut(s) | 644 |
| HspAI | GCGC | 1 cut(s) | 506 |
| KpnI | GGTACC | 1 cut(s) | 688 |
| KspAI | GTTAAC | 1 cut(s) | 615 |
| Kzo9I | GATC | 3 cut(s) | 408, 475, 533 |
| LpnPI | CCDG | 3 cut(s) | 214, 241, 572 |
| LweI | GCATC | 1 cut(s) | 201 |
| MaeI | CTAG | 3 cut(s) | 144, 509, 552 |
| MaeIII | GTNAC | 2 cut(s) | 350, 497 |
| MalI | GATC | 3 cut(s) | 410, 477, 535 |
| MboI | GATC | 3 cut(s) | 408, 475, 533 |
| MboII | GAAGA | 1 cut(s) | 342 |
| MfeI | CAATTG | 1 cut(s) | 677 |
| MluCI | AATT | 2 cut(s) | 483, 677 |
| MlyI | GAGTC | 1 cut(s) | 367 |
| MnlI | CCTC | 9 cut(s) | 19, 276, 279, 373, 450, 489, 496, 681, 761 |
| Mph1103I | ATGCAT | 2 cut(s) | 116, 140 |
| MseI | TTAA | 4 cut(s) | 158, 468, 614, 738 |
| MspCI | CTTAAG | 1 cut(s) | 737 |
| MspR9I | CCNGG | 1 cut(s) | 229 |
| MunI | CAATTG | 1 cut(s) | 677 |
| Mva1269I | GAATGC | 2 cut(s) | 281, 753 |
| MvaI | CCWGG | 1 cut(s) | 229 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 159, 301, 592 |
| NdeII | GATC | 3 cut(s) | 408, 475, 533 |
| NlaIV | GGNNCC | 1 cut(s) | 686 |
| NmuCI | GTSAC | 2 cut(s) | 350, 497 |
| NsiI | ATGCAT | 2 cut(s) | 116, 140 |
| NspI | RCATGY | 1 cut(s) | 205 |
| NspV | TTCGAA | 1 cut(s) | 559 |
| PciI | ACATGT | 1 cut(s) | 201 |
| PctI | GAATGC | 2 cut(s) | 281, 753 |
| PfeI | GAWTC | 1 cut(s) | 493 |
| Pfl23II | CGTACG | 1 cut(s) | 356 |
| Ple19I | CGATCG | 1 cut(s) | 536 |
| PleI | GAGTC | 1 cut(s) | 367 |
| PpsI | GAGTC | 1 cut(s) | 367 |
| PscI | ACATGT | 1 cut(s) | 201 |
| Psp6I | CCWGG | 1 cut(s) | 227 |
| PspGI | CCWGG | 1 cut(s) | 227 |
| PspLI | CGTACG | 1 cut(s) | 356 |
| PspN4I | GGNNCC | 1 cut(s) | 686 |
| PvuI | CGATCG | 1 cut(s) | 536 |
| RsaI | GTAC | 3 cut(s) | 179, 358, 686 |
| RsaNI | GTAC | 3 cut(s) | 178, 357, 685 |
| SaqAI | TTAA | 4 cut(s) | 158, 468, 614, 738 |
| Sau3AI | GATC | 3 cut(s) | 408, 475, 533 |
| SchI | GAGTC | 1 cut(s) | 367 |
| ScrFI | CCNGG | 1 cut(s) | 229 |
| SetI | ASST | 9 cut(s) | 145, 268, 291, 365, 467, 520, 650, 673, 690 |
| SfaNI | GCATC | 1 cut(s) | 201 |
| SfuI | TTCGAA | 1 cut(s) | 559 |
| SmlI | CTYRAG | 1 cut(s) | 737 |
| SmoI | CTYRAG | 1 cut(s) | 737 |
| Sse9I | AATT | 2 cut(s) | 483, 677 |
| SsiI | CCGC | 3 cut(s) | 190, 674, 682 |
| SspMI | CTAG | 3 cut(s) | 144, 509, 552 |
| StyD4I | CCNGG | 1 cut(s) | 227 |
| TaaI | ACNGT | 2 cut(s) | 356, 473 |
| TaqI | TCGA | 4 cut(s) | 195, 491, 559, 757 |
| TaqII | GACCGA | 3 cut(s) | 436, 546, 704 |
| TasI | AATT | 2 cut(s) | 483, 677 |
| TfiI | GAWTC | 1 cut(s) | 493 |
| Tru1I | TTAA | 4 cut(s) | 158, 468, 614, 738 |
| Tru9I | TTAA | 4 cut(s) | 158, 468, 614, 738 |
| TseFI | GTSAC | 2 cut(s) | 350, 497 |
| Tsp45I | GTSAC | 2 cut(s) | 350, 497 |
| TspDTI | ATGAA | 1 cut(s) | 99 |
| TspGWI | ACGGA | 1 cut(s) | 401 |
| Vha464I | CTTAAG | 1 cut(s) | 737 |
| XapI | RAATTY | 1 cut(s) | 483 |
| XceI | RCATGY | 1 cut(s) | 205 |
| XspI | CTAG | 3 cut(s) | 144, 509, 552 |
| Zsp2I | ATGCAT | 2 cut(s) | 116, 140 |