Rmu_sc0004536.1_g000025

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004536.1
OG0000087
Physical Location & Seq
Reverse (-)
89357 .. 92869
3513 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004536.1_g000025.1.cds

Sequence Viewer

Length: 2712 bp
atggggtggagagagtttggttccgatactcgatggggtggaaaatttgagcctccggtacccaatggggtggagagagcttggctccgatacccgatgggtttcgacggttctgatgcgttggagattgaatttaagagggaaactgactgttttccctcacttttcgcgaaatcaagaagctcaggagacttggaaggtttgcagccaagggacagagagaaccaagggagaattgcgagtgcctgtggagtgagatcgactgtctgccgaggaaaaaggttagatctctctctgcctgtggattttgtctattttcttactcggtttgcttctgctactgccaaggccgtttgctatatagcaagatttgaggtctccggtaccgtaattaggatggaatcagaagccaggggtggggatacaggatcgtcgtaccagtcctctgccaggcaagctgaagtggacatcgaccggtacttaggccgggtagaccaattagcggagaacacggggtcctcgactggggtgttctcggagagtagtggggagtccgacgagggtgagagtgagggtggatctgcggaggctccggtagtcacattggccattcccgagggcattcctaagccgaggatggaatcagaagccaggggtggggatacaggatcgtcgtaccagtcctctgccaggcaagctgaagtggacatcgaccggtacttaggccgggtagaccaattagcggagaacacggggtcctcgactggggtgttctcggagagtagtggggagtccgacgagggtgagagtgagggtggatctgcggaggctctggtagtcacagtggccattcccgagggcattcctaagccgaggtacacgcttgcggacgggaccgtatgcgacgaacctgggagaagcatgacgatgaaggagatcgtggacatgcggctgaagtgggggataccggacgcggtagagcttagaccacttagggatggggagatggccgtgaatcctgccccgggctgggtggcgctgcacgagaatcagctccaccaagggttatcgctacccctaccccggtgcctacagtatctgctgcggatgctgaacctgtcatcggggcagctgaccccgaatttcgttcgccaaatatatagtatgatggctatgtgggacctgttccagcaagggtggccttccataaatgagtttcgcgcggtacaccgggtattgtactcaaggaagcagtcttgtgcgggtacggtgacctttgccgctagggattacgagccgctagttaccgatatgcctacctcgatgagcaaaaggtggaggaacaaagtgttcctagctggtgggcggtggcagataaaaaataagaagtggcagctgaccggtacctttcaagctatcggagatcagtcctatacgctatctgaagtggaaaagaagaggatagcccgggtatatgccgtgtggtcggagaaagagaggagctcttatagattcatccggcactctatactctttaggctagggttcgggtggctccccgtgaaagccccgaagaggaaaccccggaaaggcaaggaggaggacaagatggatgacgctcaactgatggacatgctgatgagccagggagaagatgccctgcacatcgaagtcgacctggggtcgaaaggcacgagtcggtccattgaagagacccttttagagataactgataagggatacggtgaacctgatcccgacgctcctgtggcccaccccgtgcagccctccatggccgacgtaattatgattgatgacaccggcatgggaaaagtgccggcctctgtgcctatctcttctcgctctactgggagcgatgaggcgctactccctggtgagaagaagagatcccacaaggaccggcgtcgaactgataaggaggtgacgtacactggccgggatgtccagggtgctggtgcgaaaaggcaaaagaaagatcacccgggatcagggccgtcaccttcccttggtctgttatctcccgccgttcccgtaatccctaagaagcccatcaagcagctgctgaatgaatacggggtcgctgatgaaaagtttgtgcggtccatgcttggggatctggaggatatcgacctcgaccaggttcgagctaaagataatactccccaggagaatcgccgtctcgcccgggaatcgatgatgcgggcactctttaatgtgtacgccatcgacgccagtgaggaggatactcacctgaaggaggagaaggccaagctggagaaggagcgggactcgttgaaggctgagatggccgcctctaagcagcggattgctgagcttgagggcgaggttgctgaggcaagggaggaggtgaagaatgcccgggactccgagaagaaggctgcagagtctgccgtctcatggaaggagaaagcagactctctggaggatcgcctacccgcggagaggcacgaggccgtggaggagtacaagtcctcagatgagcttatctccatgctggctgctgcccaagacaaggctgtcatcatgaagtttaaggagtgggtggcggccgggtatctagatgaggccaaattcaggcggggtctcctggagaaaaagaagaaagagcgggaggcggcgggcgagtctggtgccggcgggtctcagagtaccgatggtgatcggttgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_28

Protein Analysis

903

Amino Acids

100.01

Weight (kDa)

5.48

Isoelectric Point (pI)

46.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000087)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28970 FvH4_2g03432 FvH4_2g17701 FvH4_4g10000 FvH4_4g15481 FvH4_4g15603 FvH4_6g16061 FvH4_6g25501
rosa_chinensis RchiOBHm_Chr2g0137471 RchiOBHm_Chr5g0054331
rosa_laevigata RLG00000019477 RLG00000022653 RLG00000029242
rosa_multiflora Rmu_co8012786.1_g000001 Rmu_co8165502.1_g000001 Rmu_co8383963.1_g000001 Rmu_co8428657.1_g000002 Rmu_co8441559.1_g000002 Rmu_co8493267.1_g000002 Rmu_co8512765.1_g000001 Rmu_co8522487.1_g000001 Rmu_sc0000045.1_g000034 Rmu_sc0000077.1_g000002 Rmu_sc0000177.1_g000003 Rmu_sc0000194.1_g000003 Rmu_sc0000239.1_g000073 Rmu_sc0000265.1_g000006 Rmu_sc0000271.1_g000031 Rmu_sc0000276.1_g000021 Rmu_sc0000279.1_g000008 Rmu_sc0000280.1_g000017 Rmu_sc0000315.1_g000047 Rmu_sc0000381.1_g000029 Rmu_sc0000423.1_g000013 Rmu_sc0000455.1_g000020 Rmu_sc0000596.1_g000032 Rmu_sc0000605.1_g000020 Rmu_sc0000643.1_g000006 Rmu_sc0000676.1_g000028 Rmu_sc0000698.1_g000063 Rmu_sc0000698.1_g000064 Rmu_sc0000706.1_g000030 Rmu_sc0000744.1_g000078 Rmu_sc0000744.1_g000098 Rmu_sc0000779.1_g000016 Rmu_sc0000808.1_g000006 Rmu_sc0000830.1_g000044 Rmu_sc0000842.1_g000021 Rmu_sc0000883.1_g000019 Rmu_sc0000904.1_g000013 Rmu_sc0000924.1_g000001 Rmu_sc0000959.1_g000012 Rmu_sc0001045.1_g000005 Rmu_sc0001069.1_g000021 Rmu_sc0001107.1_g000001 Rmu_sc0001155.1_g000006 Rmu_sc0001244.1_g000023 Rmu_sc0001302.1_g000017 Rmu_sc0001382.1_g000007 Rmu_sc0001393.1_g000026 Rmu_sc0001436.1_g000015 Rmu_sc0001464.1_g000021 Rmu_sc0001477.1_g000001 Rmu_sc0001483.1_g000024 Rmu_sc0001483.1_g000026 Rmu_sc0001499.1_g000020 Rmu_sc0001518.1_g000001 Rmu_sc0001520.1_g000003 Rmu_sc0001522.1_g000020 Rmu_sc0001529.1_g000008 Rmu_sc0001554.1_g000016 Rmu_sc0001563.1_g000018 Rmu_sc0001565.1_g000024 Rmu_sc0001578.1_g000014 Rmu_sc0001611.1_g000003 Rmu_sc0001700.1_g000026 Rmu_sc0001849.1_g000075 Rmu_sc0001866.1_g000011 Rmu_sc0001898.1_g000013 Rmu_sc0002029.1_g000007 Rmu_sc0002082.1_g000055 Rmu_sc0002206.1_g000032 Rmu_sc0002253.1_g000031 Rmu_sc0002264.1_g000020 Rmu_sc0002414.1_g000024 Rmu_sc0002451.1_g000063 Rmu_sc0002490.1_g000015 Rmu_sc0002539.1_g000010 Rmu_sc0002545.1_g000060 Rmu_sc0002564.1_g000020 Rmu_sc0002584.1_g000062 Rmu_sc0002669.1_g000034 Rmu_sc0002669.1_g000035 Rmu_sc0002690.1_g000010 Rmu_sc0002764.1_g000070 Rmu_sc0002786.1_g000006 Rmu_sc0002804.1_g000013 Rmu_sc0002868.1_g000015 Rmu_sc0002868.1_g000055 Rmu_sc0002889.1_g000039 Rmu_sc0002892.1_g000070 Rmu_sc0002926.1_g000001 Rmu_sc0002986.1_g000063 Rmu_sc0003032.1_g000023 Rmu_sc0003033.1_g000059 Rmu_sc0003063.1_g000022 Rmu_sc0003079.1_g000001 Rmu_sc0003092.1_g000012 Rmu_sc0003244.1_g000013 Rmu_sc0003276.1_g000004 Rmu_sc0003328.1_g000003 Rmu_sc0003352.1_g000034 Rmu_sc0003352.1_g000035 Rmu_sc0003419.1_g000038 Rmu_sc0003551.1_g000015 Rmu_sc0003669.1_g000036 Rmu_sc0003760.1_g000029 Rmu_sc0003781.1_g000021 Rmu_sc0003865.1_g000002 Rmu_sc0004012.1_g000010 Rmu_sc0004140.1_g000028 Rmu_sc0004152.1_g000002 Rmu_sc0004303.1_g000009 Rmu_sc0004336.1_g000039 Rmu_sc0004365.1_g000012 Rmu_sc0004365.1_g000013 Rmu_sc0004379.1_g000010 Rmu_sc0004529.1_g000017 Rmu_sc0004529.1_g000018 Rmu_sc0004536.1_g000025 Rmu_sc0004574.1_g000019 Rmu_sc0004602.1_g000042 Rmu_sc0004836.1_g000018 Rmu_sc0004841.1_g000037 Rmu_sc0004903.1_g000006 Rmu_sc0004977.1_g000006 Rmu_sc0005137.1_g000025 Rmu_sc0005292.1_g000031 Rmu_sc0005292.1_g000032 Rmu_sc0005353.1_g000014 Rmu_sc0005406.1_g000005 Rmu_sc0005469.1_g000016 Rmu_sc0005506.1_g000003 Rmu_sc0005507.1_g000003 Rmu_sc0005629.1_g000006 Rmu_sc0005664.1_g000033 Rmu_sc0005665.1_g000042 Rmu_sc0005685.1_g000003 Rmu_sc0006375.1_g000004 Rmu_sc0006444.1_g000020 Rmu_sc0006453.1_g000012 Rmu_sc0006676.1_g000013 Rmu_sc0006934.1_g000001 Rmu_sc0006945.1_g000001 Rmu_sc0006945.1_g000006 Rmu_sc0006954.1_g000015 Rmu_sc0007102.1_g000012 Rmu_sc0007144.1_g000007 Rmu_sc0007144.1_g000008 Rmu_sc0007230.1_g000003 Rmu_sc0007415.1_g000040 Rmu_sc0007729.1_g000001 Rmu_sc0007920.1_g000017 Rmu_sc0008058.1_g000023 Rmu_sc0008199.1_g000008 Rmu_sc0008232.1_g000010 Rmu_sc0008232.1_g000011 Rmu_sc0008336.1_g000011 Rmu_sc0008581.1_g000007 Rmu_sc0008623.1_g000002 Rmu_sc0009255.1_g000007 Rmu_sc0009479.1_g000008 Rmu_sc0009483.1_g000001 Rmu_sc0009641.1_g000001 Rmu_sc0009660.1_g000003 Rmu_sc0009978.1_g000010 Rmu_sc0010048.1_g000009 Rmu_sc0010547.1_g000007 Rmu_sc0010988.1_g000006 Rmu_sc0011148.1_g000003 Rmu_sc0011203.1_g000010 Rmu_sc0011375.1_g000004 Rmu_sc0011375.1_g000005 Rmu_sc0011559.1_g000005 Rmu_sc0012199.1_g000001 Rmu_sc0013224.1_g000005 Rmu_sc0013931.1_g000004 Rmu_sc0013931.1_g000005 Rmu_sc0013985.1_g000006 Rmu_sc0014406.1_g000001 Rmu_sc0014463.1_g000002 Rmu_sc0016218.1_g000005 Rmu_sc0019345.1_g000002 Rmu_sc0019655.1_g000001 Rmu_sc0020833.1_g000001 Rmu_sc0024204.1_g000001 Rmu_sc0024309.1_g000001 Rmu_sc0027177.1_g000002 Rmu_sc0027778.1_g000002 Rmu_sc0028215.1_g000001 Rmu_sc0029924.1_g000001 Rmu_sc0032552.1_g000001 Rmu_sc0036156.1_g000001 Rmu_sc0037073.1_g000001 Rmu_sc0040495.1_g000001 Rmu_ssc0000255.1_g000056 Rmu_ssc0000309.1_g000006 Rmu_ssc0000312.1_g000005 Rmu_ssc0000371.1_g000021 Rmu_ssc0000372.1_g000010 Rmu_ssc0000372.1_g000011 Rmu_ssc0000372.1_g000069 Rmu_ssc0000386.1_g000005 Rmu_ssc0000386.1_g000006 Rmu_ssc0000443.1_g000032
rosa_roxburghii Rroxscaffold_154G00447940 Rroxscaffold_1G00009660 Rroxscaffold_1G00016990 Rroxscaffold_1G00021370 Rroxscaffold_1G00037860 Rroxscaffold_2G00101680 Rroxscaffold_2G00101690 Rroxscaffold_2G00122690 Rroxscaffold_2G00122700 Rroxscaffold_2G00123340 Rroxscaffold_2G00123350 Rroxscaffold_2G00125480 Rroxscaffold_2G00136130 Rroxscaffold_2G00146590 Rroxscaffold_3G00218350 Rroxscaffold_3G00218360 Rroxscaffold_3G00218370 Rroxscaffold_3G00218380 Rroxscaffold_3G00232530 Rroxscaffold_3G00262600 Rroxscaffold_3G00263070 Rroxscaffold_4G00289030 Rroxscaffold_4G00296530 Rroxscaffold_4G00306140 Rroxscaffold_4G00306150 Rroxscaffold_4G00306380 Rroxscaffold_4G00306390 Rroxscaffold_4G00306400 Rroxscaffold_4G00309560 Rroxscaffold_4G00316600 Rroxscaffold_4G00322820 Rroxscaffold_4G00322830 Rroxscaffold_4G00324370 Rroxscaffold_4G00332350 Rroxscaffold_5G00346450 Rroxscaffold_5G00352960 Rroxscaffold_5G00352970 Rroxscaffold_5G00360310 Rroxscaffold_5G00373670 Rroxscaffold_5G00378610 Rroxscaffold_5G00378940 Rroxscaffold_6G00388240 Rroxscaffold_6G00389010 Rroxscaffold_6G00389030 Rroxscaffold_6G00399900 Rroxscaffold_6G00399910 Rroxscaffold_6G00400260 Rroxscaffold_6G00400270 Rroxscaffold_6G00400280 Rroxscaffold_7G00164100 Rroxscaffold_7G00176300 Rroxscaffold_7G00176310 Rroxscaffold_7G00177210 Rroxscaffold_7G00204300 Rroxscaffold_7G00204310 Rroxscaffold_7G00204320
rosa_rugosa Rorug06G0076500
rosa_samantha Rh1AG108400 Rh2AG377100 Rh2AG377200 Rh2BG383500 Rh2CG362800 Rh2DG399900 Rh2DG439600 Rh2DG672800 Rh6DG186300 Rh7AG351400 Rh7BG368500 Rh7CG368800 Rh7CG411100 Rh7DG424400
rosa_wichuraiana Rw1G021100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 2558
Acc65I GGTACC 3 cut(s) 58, 383, 1403
AccB1I GGYRCC 5 cut(s) 58, 383, 1086, 1403, 2672
AccBSI CCGCTC 2 cut(s) 2305, 2650
AccI GTMKAC 3 cut(s) 492, 732, 1674
AccII CGCG 5 cut(s) 170, 974, 1221, 1223, 2480
AclWI GGATC 9 cut(s) 436, 586, 676, 826, 1748, 1902, 2014, 2142, 2475
AcoI YGGCCR 7 cut(s) 606, 846, 1008, 1794, 1954, 2328, 2589
AcsI RAATTY 4 cut(s) 44, 131, 1141, 2612
AcuI CTGAAG 5 cut(s) 480, 720, 974, 1464, 2294
AcyI GRCGYC 2 cut(s) 1924, 2250
AdeI CACNNNGTG 1 cut(s) 1780
AgeI ACCGGT 3 cut(s) 474, 714, 1400
AgsI TTSAA 4 cut(s) 131, 1412, 1709, 2317
AhdI GACNNNNNGTC 1 cut(s) 1681
AloI GAACNNNNNNTCC 4 cut(s) 500, 532, 740, 772
Alw21I GWGCWC 1 cut(s) 1505
Alw26I GTCTC 7 cut(s) 183, 382, 1706, 2204, 2440, 2630, 2688
AlwI GGATC 9 cut(s) 436, 586, 676, 826, 1748, 1902, 2014, 2142, 2475
AlwNI CAGNNNCTG 3 cut(s) 1099, 2083, 2429
Ama87I CYCGRG 7 cut(s) 614, 854, 1024, 1467, 2002, 2205, 2400
ApoI RAATTY 4 cut(s) 44, 131, 1141, 2612
AsiGI ACCGGT 3 cut(s) 474, 714, 1400
Asp718I GGTACC 3 cut(s) 58, 383, 1403
AspLEI GCGC 3 cut(s) 1039, 1223, 1885
AspS9I GGNCC 9 cut(s) 516, 756, 894, 1180, 1701, 1771, 1918, 2012, 2121
AvaI CYCGRG 7 cut(s) 614, 854, 1024, 1467, 2002, 2205, 2400
AvaII GGWCC 7 cut(s) 516, 756, 894, 1180, 1701, 1918, 2121
BaeGI GKGCMC 1 cut(s) 2227
BalI TGGCCA 2 cut(s) 608, 848
BanI GGYRCC 5 cut(s) 58, 383, 1086, 1403, 2672
BanII GRGCYC 1 cut(s) 1505
BauI CACGAG 3 cut(s) 1043, 1693, 2489
Bbv12I GWGCWC 1 cut(s) 1505
BbvCI CCTCAGC 1 cut(s) 2373
BceAI ACGGC 8 cut(s) 335, 995, 1463, 1999, 2030, 2181, 2417, 2480
BcgI CGANNNNNNTGC 2 cut(s) 2654, 2688
BciVI GTATCC 5 cut(s) 415, 655, 957, 1733, 2257
BcoDI GTCTC 7 cut(s) 183, 382, 1706, 2204, 2440, 2630, 2688
BfaI CTAG 5 cut(s) 1284, 1301, 1355, 1541, 2600
BfmI CTRYAG 2 cut(s) 1091, 2421
BfoI RGCGCY 2 cut(s) 1040, 1886
BfuI GTATCC 5 cut(s) 415, 655, 957, 1733, 2257
BglII AGATCT 1 cut(s) 286
BlpI GCTNAGC 1 cut(s) 2352
Bme18I GGWCC 7 cut(s) 516, 756, 894, 1180, 1701, 1918, 2121
BmeRI GACNNNNNGTC 1 cut(s) 1681
BmeT110I CYCGRG 7 cut(s) 614, 854, 1024, 1467, 2002, 2205, 2400
BmgT120I GGNCC 9 cut(s) 516, 756, 894, 1180, 1701, 1771, 1918, 2012, 2121
BmrI ACTGGG 3 cut(s) 534, 774, 1878
BmsI GCATC 4 cut(s) 106, 1098, 1645, 2208
BmuI ACTGGG 3 cut(s) 534, 774, 1878
BoxI GACNNNNGTC 1 cut(s) 1923
BplI GAGNNNNNCTC 8 cut(s) 69, 101, 1487, 1519, 2294, 2326, 2513, 2545
BpmI CTGGAG 4 cut(s) 2159, 2315, 2483, 2651
Bpu10I CCTNAGC 4 cut(s) 184, 627, 867, 2373
Bpu1102I GCTNAGC 1 cut(s) 2352
BpuEI CTTGAG 2 cut(s) 1228, 2378
Bsa29I ATCGAT 1 cut(s) 2213
BsaBI GATNNNNATC 1 cut(s) 2700
BsaHI GRCGYC 2 cut(s) 1924, 2250
BsaI GGTCTC 4 cut(s) 382, 1706, 2630, 2688
BsaWI WCCGGW 7 cut(s) 55, 380, 474, 592, 714, 967, 1400
BsaXI ACNNNNNCTCC 4 cut(s) 1931, 1961, 2495, 2525
Bse118I RCCGGY 7 cut(s) 474, 714, 1400, 1820, 1837, 1920, 2675
Bse1I ACTGG 7 cut(s) 439, 529, 679, 769, 1873, 1957, 2253
Bse8I GATNNNNATC 1 cut(s) 2700
BseCI ATCGAT 1 cut(s) 2213
BseGI GGATG 7 cut(s) 402, 642, 1003, 1113, 1515, 1618, 1966
BseJI GATNNNNATC 1 cut(s) 2700
BseMII CTCAG 6 cut(s) 198, 2313, 2343, 2364, 2529, 2699
BseNI ACTGG 7 cut(s) 439, 529, 679, 769, 1873, 1957, 2253
BseRI GAGGAG 6 cut(s) 1513, 1613, 2273, 2294, 2399, 2516
BseSI GKGCMC 1 cut(s) 2227
BseX3I CGGCCG 1 cut(s) 2589
BseYI CCCAGC 1 cut(s) 1029
BsgI GTGCAG 3 cut(s) 1025, 1646, 1802
Bsh1236I CGCG 5 cut(s) 170, 974, 1221, 1223, 2480
Bsh1285I CGRYCG 3 cut(s) 475, 715, 2592
BshNI GGYRCC 5 cut(s) 58, 383, 1086, 1403, 2672
BshTI ACCGGT 3 cut(s) 474, 714, 1400
BshVI ATCGAT 1 cut(s) 2213
BsiEI CGRYCG 3 cut(s) 475, 715, 2592
BsiHKAI GWGCWC 1 cut(s) 1505
BsiHKCI CYCGRG 7 cut(s) 614, 854, 1024, 1467, 2002, 2205, 2400
BslFI GGGAC 5 cut(s) 227, 907, 1193, 2321, 2417
BsmAI GTCTC 7 cut(s) 183, 382, 1706, 2204, 2440, 2630, 2688
BsmBI CGTCTC 2 cut(s) 2204, 2440
BsmFI GGGAC 5 cut(s) 227, 907, 1193, 2321, 2417
BsmI GAATGC 3 cut(s) 621, 861, 2401
Bso31I GGTCTC 4 cut(s) 382, 1706, 2630, 2688
BsoBI CYCGRG 7 cut(s) 614, 854, 1024, 1467, 2002, 2205, 2400
Bsp1286I GDGCHC 2 cut(s) 1505, 2227
Bsp1720I GCTNAGC 1 cut(s) 2352
Bsp19I CCATGG 1 cut(s) 1791
Bsp68I TCGCGA 1 cut(s) 170
BspCNI CTCAG 6 cut(s) 197, 2314, 2344, 2365, 2528, 2698
BspDI ATCGAT 1 cut(s) 2213
BspFNI CGCG 5 cut(s) 170, 974, 1221, 1223, 2480
BspHI TCATGA 1 cut(s) 2565
BspMAI CTGCAG 1 cut(s) 2425
BspPI GGATC 9 cut(s) 436, 586, 676, 826, 1748, 1902, 2014, 2142, 2475
BspT107I GGYRCC 5 cut(s) 58, 383, 1086, 1403, 2672
BspTNI GGTCTC 4 cut(s) 382, 1706, 2630, 2688
BsrBI CCGCTC 2 cut(s) 2305, 2650
BsrFI RCCGGY 7 cut(s) 474, 714, 1400, 1820, 1837, 1920, 2675
BsrI ACTGG 7 cut(s) 439, 529, 679, 769, 1873, 1957, 2253
BssAI RCCGGY 7 cut(s) 474, 714, 1400, 1820, 1837, 1920, 2675
BssNI GRCGYC 2 cut(s) 1924, 2250
BssSI CACGAG 3 cut(s) 1043, 1693, 2489
BssT1I CCWWGG 6 cut(s) 209, 226, 345, 1060, 1791, 2026
Bst2BI CACGAG 3 cut(s) 1043, 1693, 2489
Bst4CI ACNGT 9 cut(s) 110, 152, 265, 388, 844, 898, 1095, 1270, 1745
Bst6I CTCTTC 5 cut(s) 1451, 1568, 1704, 1861, 1898
BstACI GRCGYC 2 cut(s) 1924, 2250
BstAPI GCANNNNNTGC 1 cut(s) 2429
BstC8I GCNNGC 8 cut(s) 456, 696, 885, 1839, 2223, 2538, 2662, 2677
BstDSI CCRYGG 3 cut(s) 1791, 2478, 2496
BstEII GGTNACC 1 cut(s) 1270
BstENI CCTNNNNNAGG 4 cut(s) 448, 688, 2156, 2276
BstF5I GGATG 7 cut(s) 402, 642, 1003, 1113, 1515, 1618, 1966
BstFNI CGCG 5 cut(s) 170, 974, 1221, 1223, 2480
BstH2I RGCGCY 2 cut(s) 1040, 1886
BstHHI GCGC 3 cut(s) 1039, 1223, 1885
BstMAI GTCTC 7 cut(s) 183, 382, 1706, 2204, 2440, 2630, 2688
BstMCI CGRYCG 3 cut(s) 475, 715, 2592
BstNSI RCATGY 2 cut(s) 949, 1636
BstPAI GACNNNNGTC 1 cut(s) 1923
BstPI GGTNACC 1 cut(s) 1270
BstSFI CTRYAG 2 cut(s) 1091, 2421
BstSLI GKGCMC 1 cut(s) 2227
BstUI CGCG 5 cut(s) 170, 974, 1221, 1223, 2480
BstX2I RGATCY 5 cut(s) 286, 578, 818, 1907, 2134
BstXI CCANNNNNNTGG 2 cut(s) 70, 1973
BstYI RGATCY 5 cut(s) 286, 578, 818, 1907, 2134
BstZI CGGCCG 1 cut(s) 2589
Bsu15I ATCGAT 1 cut(s) 2213
BsuI GTATCC 5 cut(s) 415, 655, 957, 1733, 2257
BsuTUI ATCGAT 1 cut(s) 2213
BtgI CCRYGG 3 cut(s) 1791, 2478, 2496
BtgZI GCGATG 1 cut(s) 1890
BtsCI GGATG 7 cut(s) 402, 642, 1003, 1113, 1515, 1618, 1966
BtsIMutI CAGTG 3 cut(s) 849, 1950, 2260
BtuMI TCGCGA 1 cut(s) 170
Cac8I GCNNGC 8 cut(s) 456, 696, 885, 1839, 2223, 2538, 2662, 2677
CaiI CAGNNNCTG 3 cut(s) 1099, 2083, 2429
CciI TCATGA 1 cut(s) 2565
CfoI GCGC 3 cut(s) 1039, 1223, 1885
Cfr10I RCCGGY 7 cut(s) 474, 714, 1400, 1820, 1837, 1920, 2675
Cfr13I GGNCC 9 cut(s) 516, 756, 894, 1180, 1701, 1771, 1918, 2012, 2121
Cfr42I CCGCGG 1 cut(s) 2481
Cfr9I CCCGGG 5 cut(s) 1024, 1467, 2002, 2205, 2400
ClaI ATCGAT 1 cut(s) 2213
CseI GACGC 5 cut(s) 980, 1625, 1769, 1913, 2258
CsiI ACCWGGT 1 cut(s) 2157
CspAI ACCGGT 3 cut(s) 474, 714, 1400
CviAII CATG 9 cut(s) 922, 946, 1633, 1792, 1825, 2125, 2439, 2533, 2566
DraIII CACNNNGTG 1 cut(s) 1780
DrdI GACNNNNNNGTC 1 cut(s) 2558
DriI GACNNNNNGTC 1 cut(s) 1681
DseDI GACNNNNNNGTC 1 cut(s) 2558
EaeI YGGCCR 7 cut(s) 606, 846, 1008, 1794, 1954, 2328, 2589
EagI CGGCCG 1 cut(s) 2589
Eam1104I CTCTTC 5 cut(s) 1451, 1568, 1704, 1861, 1898
Eam1105I GACNNNNNGTC 1 cut(s) 1681
EarI CTCTTC 5 cut(s) 1451, 1568, 1704, 1861, 1898
Ecl136II GAGCTC 1 cut(s) 1503
EclXI CGGCCG 1 cut(s) 2589
Eco130I CCWWGG 6 cut(s) 209, 226, 345, 1060, 1791, 2026
Eco24I GRGCYC 1 cut(s) 1505
Eco31I GGTCTC 4 cut(s) 382, 1706, 2630, 2688
Eco32I GATATC 1 cut(s) 2146
Eco47I GGWCC 7 cut(s) 516, 756, 894, 1180, 1701, 1918, 2121
Eco52I CGGCCG 1 cut(s) 2589
Eco53kI GAGCTC 1 cut(s) 1503
Eco57I CTGAAG 5 cut(s) 480, 720, 974, 1464, 2294
Eco88I CYCGRG 7 cut(s) 614, 854, 1024, 1467, 2002, 2205, 2400
Eco91I GGTNACC 1 cut(s) 1270
EcoICRI GAGCTC 1 cut(s) 1503
EcoNI CCTNNNNNAGG 4 cut(s) 448, 688, 2156, 2276
EcoO109I RGGNCCY 3 cut(s) 516, 756, 1180
EcoO65I GGTNACC 1 cut(s) 1270
EcoRV GATATC 1 cut(s) 2146
EcoT14I CCWWGG 6 cut(s) 209, 226, 345, 1060, 1791, 2026
EcoT38I GRGCYC 1 cut(s) 1505
ErhI CCWWGG 6 cut(s) 209, 226, 345, 1060, 1791, 2026
Esp3I CGTCTC 2 cut(s) 2204, 2440
FaeI CATG 9 cut(s) 925, 949, 1636, 1795, 1828, 2128, 2442, 2536, 2569
FalI AAGNNNNNCTT 2 cut(s) 1701, 1733
FaqI GGGAC 5 cut(s) 227, 907, 1193, 2321, 2417
FatI CATG 9 cut(s) 921, 945, 1632, 1791, 1824, 2124, 2438, 2532, 2565
FauI CCCGC 9 cut(s) 1255, 2050, 2214, 2298, 2485, 2613, 2643, 2653, 2672
FblI GTMKAC 3 cut(s) 492, 732, 1674
FokI GGATG 7 cut(s) 409, 649, 1010, 1120, 1502, 1625, 1973
FriOI GRGCYC 1 cut(s) 1505
FspBI CTAG 5 cut(s) 1284, 1301, 1355, 1541, 2600
GlaI GCGC 3 cut(s) 1038, 1222, 1884
GsaI CCCAGC 1 cut(s) 1033
GsuI CTGGAG 4 cut(s) 2159, 2315, 2483, 2651
HaeII RGCGCY 2 cut(s) 1040, 1886
HgaI GACGC 5 cut(s) 980, 1625, 1769, 1913, 2258
HhaI GCGC 3 cut(s) 1039, 1223, 1885
Hin1I GRCGYC 2 cut(s) 1924, 2250
Hin1II CATG 9 cut(s) 925, 949, 1636, 1795, 1828, 2128, 2442, 2536, 2569
Hin6I GCGC 3 cut(s) 1037, 1221, 1883
HinP1I GCGC 3 cut(s) 1037, 1221, 1883
HincII GTYRAC 1 cut(s) 1675
HindII GTYRAC 1 cut(s) 1675
HpyCH4III ACNGT 9 cut(s) 110, 152, 265, 388, 844, 898, 1095, 1270, 1745
HpyCH4IV ACGT 2 cut(s) 1800, 1946
HpyCH4V TGCA 5 cut(s) 205, 1042, 1663, 1783, 2423
HpySE526I ACGT 2 cut(s) 1800, 1946
Hsp92I GRCGYC 2 cut(s) 1924, 2250
Hsp92II CATG 9 cut(s) 925, 949, 1636, 1795, 1828, 2128, 2442, 2536, 2569
HspAI GCGC 3 cut(s) 1037, 1221, 1883
KpnI GGTACC 3 cut(s) 62, 387, 1407
KroI GCCGGC 2 cut(s) 1837, 2675
KroNI GCCGGC 2 cut(s) 1839, 2677
KspI CCGCGG 1 cut(s) 2481
LmnI GCTCC 8 cut(s) 90, 595, 1059, 1500, 1560, 1768, 1872, 2302
LweI GCATC 4 cut(s) 106, 1098, 1645, 2208
MabI ACCWGGT 1 cut(s) 2157
MaeI CTAG 5 cut(s) 1284, 1301, 1355, 1541, 2600
MaeII ACGT 2 cut(s) 1800, 1946
MaeIII GTNAC 6 cut(s) 598, 838, 1270, 1303, 1942, 2016
MbiI CCGCTC 2 cut(s) 2305, 2650
MflI RGATCY 5 cut(s) 286, 578, 818, 1907, 2134
MhlI GDGCHC 2 cut(s) 1505, 2227
MlsI TGGCCA 2 cut(s) 608, 848
MluCI AATT 9 cut(s) 44, 131, 234, 390, 497, 737, 1141, 1803, 2612
MluNI TGGCCA 2 cut(s) 608, 848
MlyI GAGTC 8 cut(s) 560, 800, 1705, 2303, 2399, 2435, 2450, 2675
MmeI TCCRAC 4 cut(s) 102, 579, 819, 1467
Mox20I TGGCCA 2 cut(s) 608, 848
MroNI GCCGGC 2 cut(s) 1837, 2675
MscI TGGCCA 2 cut(s) 608, 848
MseI TTAA 3 cut(s) 135, 2232, 2574
MslI CAYNNNNRTG 3 cut(s) 926, 1637, 1823
Msp20I TGGCCA 2 cut(s) 608, 848
MspA1I CMGCKG 5 cut(s) 1132, 1396, 2080, 2344, 2480
Mva1269I GAATGC 3 cut(s) 621, 861, 2401
MvnI CGCG 5 cut(s) 170, 974, 1221, 1223, 2480
NaeI GCCGGC 2 cut(s) 1839, 2677
NcoI CCATGG 1 cut(s) 1791
NgoMIV GCCGGC 2 cut(s) 1837, 2675
NlaIII CATG 9 cut(s) 925, 949, 1636, 1795, 1828, 2128, 2442, 2536, 2569
NmeAIII GCCGAG 3 cut(s) 296, 657, 897
NmuCI GTSAC 5 cut(s) 598, 838, 1270, 1942, 2016
NruI TCGCGA 1 cut(s) 170
NspI RCATGY 2 cut(s) 949, 1636
PagI TCATGA 1 cut(s) 2565
PcsI WCGNNNNNNNCGW 3 cut(s) 518, 758, 1691
PctI GAATGC 3 cut(s) 621, 861, 2401
PdiI GCCGGC 2 cut(s) 1839, 2677
PfeI GAWTC 7 cut(s) 401, 641, 1015, 1048, 1512, 2191, 2210
PfoI TCCNGGA 1 cut(s) 2628
PinAI ACCGGT 3 cut(s) 474, 714, 1400
PleI GAGTC 8 cut(s) 559, 799, 1704, 2303, 2399, 2434, 2450, 2674
PpsI GAGTC 8 cut(s) 559, 799, 1704, 2303, 2399, 2434, 2450, 2674
PpuMI RGGWCCY 3 cut(s) 516, 756, 1180
PshAI GACNNNNGTC 1 cut(s) 1923
Psp124BI GAGCTC 1 cut(s) 1505
Psp5II RGGWCCY 3 cut(s) 516, 756, 1180
PspEI GGTNACC 1 cut(s) 1270
PspFI CCCAGC 1 cut(s) 1029
PspPI GGNCC 9 cut(s) 516, 756, 894, 1180, 1701, 1771, 1918, 2012, 2121
PspPPI RGGWCCY 3 cut(s) 516, 756, 1180
PstI CTGCAG 1 cut(s) 2425
PstNI CAGNNNCTG 3 cut(s) 1099, 2083, 2429
PsuI RGATCY 5 cut(s) 286, 578, 818, 1907, 2134
PvuII CAGCTG 3 cut(s) 1132, 1396, 2080
RruI TCGCGA 1 cut(s) 170
RseI CAYNNNNRTG 3 cut(s) 926, 1637, 1823
SacI GAGCTC 1 cut(s) 1505
SacII CCGCGG 1 cut(s) 2481
SalI GTCGAC 1 cut(s) 1673
SaqAI TTAA 3 cut(s) 135, 2232, 2574
Sau96I GGNCC 9 cut(s) 516, 756, 894, 1180, 1701, 1771, 1918, 2012, 2121
SchI GAGTC 8 cut(s) 560, 800, 1705, 2303, 2399, 2435, 2450, 2675
SduI GDGCHC 2 cut(s) 1505, 2227
SexAI ACCWGGT 1 cut(s) 2157
SfaNI GCATC 4 cut(s) 106, 1098, 1645, 2208
SfcI CTRYAG 2 cut(s) 1091, 2421
Sfr303I CCGCGG 1 cut(s) 2481
SgrBI CCGCGG 1 cut(s) 2481
SinI GGWCC 7 cut(s) 516, 756, 894, 1180, 1701, 1918, 2121
SmaI CCCGGG 5 cut(s) 1026, 1469, 2004, 2207, 2402
SmiMI CAYNNNNRTG 3 cut(s) 926, 1637, 1823
SmlI CTYRAG 2 cut(s) 1243, 2357
SmoI CTYRAG 2 cut(s) 1243, 2357
Sse9I AATT 9 cut(s) 44, 131, 234, 390, 497, 737, 1141, 1803, 2612
SspMI CTAG 5 cut(s) 1284, 1301, 1355, 1541, 2600
SstI GAGCTC 1 cut(s) 1505
StyI CCWWGG 6 cut(s) 209, 226, 345, 1060, 1791, 2026
TaaI ACNGT 9 cut(s) 110, 152, 265, 388, 844, 898, 1095, 1270, 1745
TaiI ACGT 2 cut(s) 1803, 1949
TaqII GACCGA 1 cut(s) 1689
TasI AATT 9 cut(s) 44, 131, 234, 390, 497, 737, 1141, 1803, 2612
TatI WGTACW 2 cut(s) 1239, 2505
TauI GCSGC 6 cut(s) 952, 1283, 1300, 2333, 2591, 2660
TfiI GAWTC 7 cut(s) 401, 641, 1015, 1048, 1512, 2191, 2210
Tru1I TTAA 3 cut(s) 135, 2232, 2574
Tru9I TTAA 3 cut(s) 135, 2232, 2574
TscAI CASTG 3 cut(s) 849, 1957, 2260
TseFI GTSAC 5 cut(s) 598, 838, 1270, 1942, 2016
Tsp45I GTSAC 5 cut(s) 598, 838, 1270, 1942, 2016
TspDTI ATGAA 5 cut(s) 944, 1504, 2103, 2121, 2582
TspMI CCCGGG 5 cut(s) 1024, 1467, 2002, 2205, 2400
TspRI CASTG 3 cut(s) 849, 1957, 2260
VpaK11BI GGWCC 7 cut(s) 516, 756, 894, 1180, 1701, 1918, 2121
XagI CCTNNNNNAGG 4 cut(s) 448, 688, 2156, 2276
XapI RAATTY 4 cut(s) 44, 131, 1141, 2612
XbaI TCTAGA 1 cut(s) 2599
XceI RCATGY 2 cut(s) 949, 1636
XmaI CCCGGG 5 cut(s) 1024, 1467, 2002, 2205, 2400
XmiI GTMKAC 3 cut(s) 492, 732, 1674
XspI CTAG 5 cut(s) 1284, 1301, 1355, 1541, 2600
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.