Rmu_sc0004977.1_g000006

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004977.1
OG0000087
Physical Location & Seq
Reverse (-)
26237 .. 30904
4668 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004977.1_g000006.1.cds

Sequence Viewer

Length: 2607 bp
atgtcgtgctcgggccgtaccagacatgtaagggctcggactgggccgggccaatgggctaatattcttaggcccaacccggcccgttattctaacgtgctcgggtcgtgccgggttactaacaggcttgggccgtgccgggccacttttaagcgtgccgtgctcgtgcttagcggcccgtttgccacctctagctggagtctcccctatcctcgatgtgggacgcaggttcttctgatgccatatcagtcttgtatttgtaaaatagatgggctgtgctggccttgccccgggccctgggtgcccggggtggcaccttatgtgaagcccgccatggtgaggtgtgaaccaggcccatggcgtagtacctgggagtaccgatggggctcagggtctagtgccaaacctagtaagccactttcctgggacaataaggttgtccctgggactggatgggatggagaatttgagcctccggtacccaatgggggcttagcttcaatacctgatggggtagaaaatttgagcctccggtacccaatggggtggagagggcttagcttccatacccgatggggtagaaaatttgggcctccggtacccaatgggcgatcctacggcagaaggcgtttcggtttcgatggtcctaatgcattgaagattgaatttaagagggaaactgactgttttccctcacttttcgcgaaaaagaagctcgggagatttggaaggtttgcagcaaagagtcagggagagccaagggagaattgtgagtgcctgtggagtgagatcgatcgtctgccgaggaaaaggttagatctctctctgcctgtggattttacctattttcttgctaggtctgcttctgttactgccaaggcagttttctatatagcaagatttgaggtccccggtaccgtagttaggatggaatcagaagccaggggtggggatacgggatcgtcgtaccagtcttctgccaggcaagctgaagtggacatcgaccggtacctaggccgggtagaccaattagcggagaacacggggtcctcgactggggtgttcttggagagtagtggggagtccgacgagggtgagagcgagggtggatctgcggaggcctcgatagtcacagtggccattcccgagggcattcctaagccgaggtacacacttgcggacgggaccgtatgcgacgaacctgggagaagcatgtcgatgaaggagatcgtagacatgcggctgatgtgggggatactggacacagtagagcttcggcctcttagggatggggagatggccgcgaatcctgccccggggtggggggcgctgcacgagaatcagctccaccaagggttatcgctacccctgccccggtgcctacagtatctgctgcggatgctgaacctgtctccggggcagctgacccctaatgccgttcgccaaatatatatcctacacgctatccgaagtagaaaagaagaggataacccggtgaaagcgccgaagaggaaaccccggaaaggcaaggaggaggacaagatggatgatgcccaactgatggacatgttgatgagccagggagaagatgccctgcacatcgacgtcgacctagggtcgaaaggcacgagtcggtctattgaagagaccctgttagagataaccgatgagggatacggtgaacctgaccccgatgcccctgtggcccacgtcgtgcagccctccatggccgatttcattacgatagatgacaccggaataggaaaagtaccggcctcagtgcctatttcctctcgttccattgggagcaatgaggcgttactccccagtgagaagaagagatcccacaagcaccgacatcgaacagataaggaggtgacgtacactggccgggatgtccagggtactggtgcgaagaggcagaagaaagatcacccgggatcagcgccgtcgccttctcttggcctgttatctcccgccattccggtaatccccaagaagcccatcaagcagctactgaatgaatacggggttgccgatgaaaagttcgtgcggtccatgcttggggatctgaaggatatagacctcgaccgggttcgagccaaagataatactccccaggagaatcgccgtctcgcccgggaatcaatgatgcgggtgaagtatcttcatggcgagaaggccaagctggagaaggagcgggactcattgagggctgagatagccgcctctaagcagtggattgcggagcttgagggtgaggttactgaggcgcgggtggaggtaaagaacgcccgggacttcgagaagaagcctgcagagtctgccgtctcatggaaggaaaaggcagactctctggaggatcgccttcccgcggagaggcacgaggccgtggaggagtacaagtcctcggatgagcttatctcaatgctggctgctgcccaatataaggctgtcatcatgaagtttaaggagtgggtggcagccgggtacttagatgaggccaaattcaggcggggtctcctggagaaaaggaagaaggagctggaggccgcgggcaagtccggtgtcggtgggtctcagagtaccgatggagatcggttgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

868

Amino Acids

96.23

Weight (kDa)

8.85

Isoelectric Point (pI)

45.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000087)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28970 FvH4_2g03432 FvH4_2g17701 FvH4_4g10000 FvH4_4g15481 FvH4_4g15603 FvH4_6g16061 FvH4_6g25501
rosa_chinensis RchiOBHm_Chr2g0137471 RchiOBHm_Chr5g0054331
rosa_laevigata RLG00000019477 RLG00000022653 RLG00000029242
rosa_multiflora Rmu_co8012786.1_g000001 Rmu_co8165502.1_g000001 Rmu_co8383963.1_g000001 Rmu_co8428657.1_g000002 Rmu_co8441559.1_g000002 Rmu_co8493267.1_g000002 Rmu_co8512765.1_g000001 Rmu_co8522487.1_g000001 Rmu_sc0000045.1_g000034 Rmu_sc0000077.1_g000002 Rmu_sc0000177.1_g000003 Rmu_sc0000194.1_g000003 Rmu_sc0000239.1_g000073 Rmu_sc0000265.1_g000006 Rmu_sc0000271.1_g000031 Rmu_sc0000276.1_g000021 Rmu_sc0000279.1_g000008 Rmu_sc0000280.1_g000017 Rmu_sc0000315.1_g000047 Rmu_sc0000381.1_g000029 Rmu_sc0000423.1_g000013 Rmu_sc0000455.1_g000020 Rmu_sc0000596.1_g000032 Rmu_sc0000605.1_g000020 Rmu_sc0000643.1_g000006 Rmu_sc0000676.1_g000028 Rmu_sc0000698.1_g000063 Rmu_sc0000698.1_g000064 Rmu_sc0000706.1_g000030 Rmu_sc0000744.1_g000078 Rmu_sc0000744.1_g000098 Rmu_sc0000779.1_g000016 Rmu_sc0000808.1_g000006 Rmu_sc0000830.1_g000044 Rmu_sc0000842.1_g000021 Rmu_sc0000883.1_g000019 Rmu_sc0000904.1_g000013 Rmu_sc0000924.1_g000001 Rmu_sc0000959.1_g000012 Rmu_sc0001045.1_g000005 Rmu_sc0001069.1_g000021 Rmu_sc0001107.1_g000001 Rmu_sc0001155.1_g000006 Rmu_sc0001244.1_g000023 Rmu_sc0001302.1_g000017 Rmu_sc0001382.1_g000007 Rmu_sc0001393.1_g000026 Rmu_sc0001436.1_g000015 Rmu_sc0001464.1_g000021 Rmu_sc0001477.1_g000001 Rmu_sc0001483.1_g000024 Rmu_sc0001483.1_g000026 Rmu_sc0001499.1_g000020 Rmu_sc0001518.1_g000001 Rmu_sc0001520.1_g000003 Rmu_sc0001522.1_g000020 Rmu_sc0001529.1_g000008 Rmu_sc0001554.1_g000016 Rmu_sc0001563.1_g000018 Rmu_sc0001565.1_g000024 Rmu_sc0001578.1_g000014 Rmu_sc0001611.1_g000003 Rmu_sc0001700.1_g000026 Rmu_sc0001849.1_g000075 Rmu_sc0001866.1_g000011 Rmu_sc0001898.1_g000013 Rmu_sc0002029.1_g000007 Rmu_sc0002082.1_g000055 Rmu_sc0002206.1_g000032 Rmu_sc0002253.1_g000031 Rmu_sc0002264.1_g000020 Rmu_sc0002414.1_g000024 Rmu_sc0002451.1_g000063 Rmu_sc0002490.1_g000015 Rmu_sc0002539.1_g000010 Rmu_sc0002545.1_g000060 Rmu_sc0002564.1_g000020 Rmu_sc0002584.1_g000062 Rmu_sc0002669.1_g000034 Rmu_sc0002669.1_g000035 Rmu_sc0002690.1_g000010 Rmu_sc0002764.1_g000070 Rmu_sc0002786.1_g000006 Rmu_sc0002804.1_g000013 Rmu_sc0002868.1_g000015 Rmu_sc0002868.1_g000055 Rmu_sc0002889.1_g000039 Rmu_sc0002892.1_g000070 Rmu_sc0002926.1_g000001 Rmu_sc0002986.1_g000063 Rmu_sc0003032.1_g000023 Rmu_sc0003033.1_g000059 Rmu_sc0003063.1_g000022 Rmu_sc0003079.1_g000001 Rmu_sc0003092.1_g000012 Rmu_sc0003244.1_g000013 Rmu_sc0003276.1_g000004 Rmu_sc0003328.1_g000003 Rmu_sc0003352.1_g000034 Rmu_sc0003352.1_g000035 Rmu_sc0003419.1_g000038 Rmu_sc0003551.1_g000015 Rmu_sc0003669.1_g000036 Rmu_sc0003760.1_g000029 Rmu_sc0003781.1_g000021 Rmu_sc0003865.1_g000002 Rmu_sc0004012.1_g000010 Rmu_sc0004140.1_g000028 Rmu_sc0004152.1_g000002 Rmu_sc0004303.1_g000009 Rmu_sc0004336.1_g000039 Rmu_sc0004365.1_g000012 Rmu_sc0004365.1_g000013 Rmu_sc0004379.1_g000010 Rmu_sc0004529.1_g000017 Rmu_sc0004529.1_g000018 Rmu_sc0004536.1_g000025 Rmu_sc0004574.1_g000019 Rmu_sc0004602.1_g000042 Rmu_sc0004836.1_g000018 Rmu_sc0004841.1_g000037 Rmu_sc0004903.1_g000006 Rmu_sc0004977.1_g000006 Rmu_sc0005137.1_g000025 Rmu_sc0005292.1_g000031 Rmu_sc0005292.1_g000032 Rmu_sc0005353.1_g000014 Rmu_sc0005406.1_g000005 Rmu_sc0005469.1_g000016 Rmu_sc0005506.1_g000003 Rmu_sc0005507.1_g000003 Rmu_sc0005629.1_g000006 Rmu_sc0005664.1_g000033 Rmu_sc0005665.1_g000042 Rmu_sc0005685.1_g000003 Rmu_sc0006375.1_g000004 Rmu_sc0006444.1_g000020 Rmu_sc0006453.1_g000012 Rmu_sc0006676.1_g000013 Rmu_sc0006934.1_g000001 Rmu_sc0006945.1_g000001 Rmu_sc0006945.1_g000006 Rmu_sc0006954.1_g000015 Rmu_sc0007102.1_g000012 Rmu_sc0007144.1_g000007 Rmu_sc0007144.1_g000008 Rmu_sc0007230.1_g000003 Rmu_sc0007415.1_g000040 Rmu_sc0007729.1_g000001 Rmu_sc0007920.1_g000017 Rmu_sc0008058.1_g000023 Rmu_sc0008199.1_g000008 Rmu_sc0008232.1_g000010 Rmu_sc0008232.1_g000011 Rmu_sc0008336.1_g000011 Rmu_sc0008581.1_g000007 Rmu_sc0008623.1_g000002 Rmu_sc0009255.1_g000007 Rmu_sc0009479.1_g000008 Rmu_sc0009483.1_g000001 Rmu_sc0009641.1_g000001 Rmu_sc0009660.1_g000003 Rmu_sc0009978.1_g000010 Rmu_sc0010048.1_g000009 Rmu_sc0010547.1_g000007 Rmu_sc0010988.1_g000006 Rmu_sc0011148.1_g000003 Rmu_sc0011203.1_g000010 Rmu_sc0011375.1_g000004 Rmu_sc0011375.1_g000005 Rmu_sc0011559.1_g000005 Rmu_sc0012199.1_g000001 Rmu_sc0013224.1_g000005 Rmu_sc0013931.1_g000004 Rmu_sc0013931.1_g000005 Rmu_sc0013985.1_g000006 Rmu_sc0014406.1_g000001 Rmu_sc0014463.1_g000002 Rmu_sc0016218.1_g000005 Rmu_sc0019345.1_g000002 Rmu_sc0019655.1_g000001 Rmu_sc0020833.1_g000001 Rmu_sc0024204.1_g000001 Rmu_sc0024309.1_g000001 Rmu_sc0027177.1_g000002 Rmu_sc0027778.1_g000002 Rmu_sc0028215.1_g000001 Rmu_sc0029924.1_g000001 Rmu_sc0032552.1_g000001 Rmu_sc0036156.1_g000001 Rmu_sc0037073.1_g000001 Rmu_sc0040495.1_g000001 Rmu_ssc0000255.1_g000056 Rmu_ssc0000309.1_g000006 Rmu_ssc0000312.1_g000005 Rmu_ssc0000371.1_g000021 Rmu_ssc0000372.1_g000010 Rmu_ssc0000372.1_g000011 Rmu_ssc0000372.1_g000069 Rmu_ssc0000386.1_g000005 Rmu_ssc0000386.1_g000006 Rmu_ssc0000443.1_g000032
rosa_roxburghii Rroxscaffold_154G00447940 Rroxscaffold_1G00009660 Rroxscaffold_1G00016990 Rroxscaffold_1G00021370 Rroxscaffold_1G00037860 Rroxscaffold_2G00101680 Rroxscaffold_2G00101690 Rroxscaffold_2G00122690 Rroxscaffold_2G00122700 Rroxscaffold_2G00123340 Rroxscaffold_2G00123350 Rroxscaffold_2G00125480 Rroxscaffold_2G00136130 Rroxscaffold_2G00146590 Rroxscaffold_3G00218350 Rroxscaffold_3G00218360 Rroxscaffold_3G00218370 Rroxscaffold_3G00218380 Rroxscaffold_3G00232530 Rroxscaffold_3G00262600 Rroxscaffold_3G00263070 Rroxscaffold_4G00289030 Rroxscaffold_4G00296530 Rroxscaffold_4G00306140 Rroxscaffold_4G00306150 Rroxscaffold_4G00306380 Rroxscaffold_4G00306390 Rroxscaffold_4G00306400 Rroxscaffold_4G00309560 Rroxscaffold_4G00316600 Rroxscaffold_4G00322820 Rroxscaffold_4G00322830 Rroxscaffold_4G00324370 Rroxscaffold_4G00332350 Rroxscaffold_5G00346450 Rroxscaffold_5G00352960 Rroxscaffold_5G00352970 Rroxscaffold_5G00360310 Rroxscaffold_5G00373670 Rroxscaffold_5G00378610 Rroxscaffold_5G00378940 Rroxscaffold_6G00388240 Rroxscaffold_6G00389010 Rroxscaffold_6G00389030 Rroxscaffold_6G00399900 Rroxscaffold_6G00399910 Rroxscaffold_6G00400260 Rroxscaffold_6G00400270 Rroxscaffold_6G00400280 Rroxscaffold_7G00164100 Rroxscaffold_7G00176300 Rroxscaffold_7G00176310 Rroxscaffold_7G00177210 Rroxscaffold_7G00204300 Rroxscaffold_7G00204310 Rroxscaffold_7G00204320
rosa_rugosa Rorug06G0076500
rosa_samantha Rh1AG108400 Rh2AG377100 Rh2AG377200 Rh2BG383500 Rh2CG362800 Rh2DG399900 Rh2DG439600 Rh2DG672800 Rh6DG186300 Rh7AG351400 Rh7BG368500 Rh7CG368800 Rh7CG411100 Rh7DG424400
rosa_wichuraiana Rw1G021100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1608
Acc36I ACCTGC 1 cut(s) 217
Acc65I GGTACC 5 cut(s) 478, 534, 598, 914, 1008
AccB1I GGYRCC 8 cut(s) 301, 313, 478, 534, 598, 914, 1008, 1377
AccB7I CCANNNNNTGG 1 cut(s) 1561
AccBSI CCGCTC 1 cut(s) 2200
AccI GTMKAC 3 cut(s) 1023, 1233, 1608
AccII CGCG 5 cut(s) 704, 1304, 2275, 2375, 2555
AclWI GGATC 7 cut(s) 606, 967, 1117, 1836, 1948, 2076, 2370
AcoI YGGCCR 4 cut(s) 1137, 1299, 1728, 1888
AcsI RAATTY 5 cut(s) 464, 520, 584, 665, 2507
AcuI CTGAAG 2 cut(s) 1011, 2093
AcyI GRCGYC 1 cut(s) 1605
AdeI CACNNNGTG 1 cut(s) 1714
AflIII ACRYGT 2 cut(s) 25, 1566
AgeI ACCGGT 1 cut(s) 1005
AgsI TTSAA 4 cut(s) 501, 658, 665, 1643
AhdI GACNNNNNGTC 1 cut(s) 1615
AjiI CACGTC 1 cut(s) 1711
AjuI GAANNNNNNNTTGG 2 cut(s) 869, 901
AloI GAACNNNNNNTCC 2 cut(s) 1031, 1063
Alw21I GWGCWC 3 cut(s) 11, 102, 165
Alw26I GTCTC 7 cut(s) 206, 1416, 1640, 2138, 2335, 2525, 2583
AlwI GGATC 7 cut(s) 606, 967, 1117, 1836, 1948, 2076, 2370
AlwNI CAGNNNCTG 3 cut(s) 1390, 2017, 2324
ApaI GGGCCC 1 cut(s) 297
ApeKI GCWGC 9 cut(s) 737, 1330, 1393, 1420, 1717, 2011, 2435, 2438, 2483
ApoI RAATTY 5 cut(s) 464, 520, 584, 665, 2507
AsiGI ACCGGT 1 cut(s) 1005
Asp718I GGTACC 5 cut(s) 478, 534, 598, 914, 1008
AspA2I CCTAGG 2 cut(s) 1012, 1612
AspLEI GCGC 4 cut(s) 1330, 1504, 1948, 2275
AsuHPI GGTGA 8 cut(s) 349, 1106, 1507, 1691, 1888, 1925, 2170, 2270
AvaII GGWCC 5 cut(s) 644, 907, 1047, 1185, 2055
AvrII CCTAGG 2 cut(s) 1012, 1612
BaeGI GKGCMC 2 cut(s) 297, 306
BaeI ACNNNNGTAYC 2 cut(s) 906, 939
BalI TGGCCA 1 cut(s) 1139
BanI GGYRCC 8 cut(s) 301, 313, 478, 534, 598, 914, 1008, 1377
BanII GRGCYC 3 cut(s) 37, 297, 389
BauI CACGAG 4 cut(s) 164, 1334, 1627, 2384
BbsI GAAGAC 1 cut(s) 966
Bbv12I GWGCWC 3 cut(s) 11, 102, 165
BbvI GCAGC 9 cut(s) 749, 1317, 1380, 1432, 1729, 2023, 2422, 2425, 2495
BceAI ACGGC 8 cut(s) 118, 143, 634, 1421, 1933, 2115, 2312, 2375
BcgI CGANNNNNNTGC 2 cut(s) 1841, 1875
BciVI GTATCC 3 cut(s) 946, 1248, 1667
BcoDI GTCTC 7 cut(s) 206, 1416, 1640, 2138, 2335, 2525, 2583
BfaI CTAG 6 cut(s) 192, 396, 408, 855, 1013, 1613
BfmI CTRYAG 2 cut(s) 1382, 2316
BfoI RGCGCY 3 cut(s) 1331, 1505, 1949
BfuAI ACCTGC 1 cut(s) 217
BfuI GTATCC 3 cut(s) 946, 1248, 1667
BglI GCCNNNNNGGC 1 cut(s) 1703
BglII AGATCT 1 cut(s) 817
BlnI CCTAGG 2 cut(s) 1012, 1612
BlpI GCTNAGC 3 cut(s) 170, 493, 557
Bme18I GGWCC 5 cut(s) 644, 907, 1047, 1185, 2055
BmeRI GACNNNNNGTC 1 cut(s) 1615
BmgBI CACGTC 1 cut(s) 1711
BmrI ACTGGG 3 cut(s) 51, 1065, 1821
BmsI GCATC 6 cut(s) 228, 1389, 1540, 1579, 1684, 2142
BmuI ACTGGG 3 cut(s) 51, 1065, 1821
BpiI GAAGAC 1 cut(s) 966
BplI GAGNNNNNCTC 4 cut(s) 2189, 2221, 2408, 2440
BpmI CTGGAG 5 cut(s) 217, 2210, 2378, 2546, 2567
Bpu10I CCTNAGC 2 cut(s) 388, 1158
Bpu1102I GCTNAGC 3 cut(s) 170, 493, 557
BpuEI CTTGAG 1 cut(s) 2273
Bsa29I ATCGAT 1 cut(s) 792
BsaBI GATNNNNATC 1 cut(s) 2595
BsaHI GRCGYC 1 cut(s) 1605
BsaI GGTCTC 3 cut(s) 1640, 2525, 2583
BsaWI WCCGGW 7 cut(s) 475, 531, 595, 1005, 1754, 1984, 2564
BsaXI ACNNNNNCTCC 4 cut(s) 1865, 1895, 2390, 2420
Bse118I RCCGGY 2 cut(s) 1005, 1771
Bse1I ACTGG 8 cut(s) 46, 454, 970, 1060, 1263, 1827, 1891, 1912
Bse3DI GCAATG 1 cut(s) 1816
Bse8I GATNNNNATC 1 cut(s) 2595
BseCI ATCGAT 1 cut(s) 792
BseGI GGATG 8 cut(s) 458, 463, 933, 1294, 1404, 1552, 1900, 2419
BseJI GATNNNNATC 1 cut(s) 2595
BseMI GCAATG 1 cut(s) 1816
BseMII CTCAG 5 cut(s) 402, 1791, 2208, 2259, 2594
BseNI ACTGG 8 cut(s) 46, 454, 970, 1060, 1263, 1827, 1891, 1912
BseRI GAGGAG 2 cut(s) 1547, 2411
BseSI GKGCMC 2 cut(s) 297, 306
BseXI GCAGC 9 cut(s) 749, 1317, 1380, 1432, 1729, 2023, 2422, 2425, 2495
BsgI GTGCAG 3 cut(s) 1316, 1580, 1736
Bsh1236I CGCG 5 cut(s) 704, 1304, 2275, 2375, 2555
Bsh1285I CGRYCG 3 cut(s) 796, 1006, 2092
BshNI GGYRCC 8 cut(s) 301, 313, 478, 534, 598, 914, 1008, 1377
BshTI ACCGGT 1 cut(s) 1005
BshVI ATCGAT 1 cut(s) 792
BsiEI CGRYCG 3 cut(s) 796, 1006, 2092
BsiHKAI GWGCWC 3 cut(s) 11, 102, 165
BslFI GGGAC 8 cut(s) 235, 425, 440, 460, 893, 1198, 2216, 2312
BsmAI GTCTC 7 cut(s) 206, 1416, 1640, 2138, 2335, 2525, 2583
BsmBI CGTCTC 2 cut(s) 2138, 2335
BsmFI GGGAC 8 cut(s) 235, 425, 440, 460, 893, 1198, 2216, 2312
BsmI GAATGC 1 cut(s) 1152
Bso31I GGTCTC 3 cut(s) 1640, 2525, 2583
Bsp120I GGGCCC 1 cut(s) 293
Bsp1286I GDGCHC 7 cut(s) 11, 37, 102, 165, 297, 306, 389
Bsp1720I GCTNAGC 3 cut(s) 170, 493, 557
Bsp19I CCATGG 3 cut(s) 333, 356, 1725
Bsp68I TCGCGA 1 cut(s) 704
BspCNI CTCAG 5 cut(s) 401, 1790, 2209, 2260, 2593
BspDI ATCGAT 1 cut(s) 792
BspFNI CGCG 5 cut(s) 704, 1304, 2275, 2375, 2555
BspHI TCATGA 1 cut(s) 2460
BspMAI CTGCAG 1 cut(s) 2320
BspMI ACCTGC 1 cut(s) 217
BspPI GGATC 7 cut(s) 606, 967, 1117, 1836, 1948, 2076, 2370
BspT107I GGYRCC 8 cut(s) 301, 313, 478, 534, 598, 914, 1008, 1377
BspTNI GGTCTC 3 cut(s) 1640, 2525, 2583
BsrBI CCGCTC 1 cut(s) 2200
BsrDI GCAATG 1 cut(s) 1816
BsrFI RCCGGY 2 cut(s) 1005, 1771
BsrI ACTGG 8 cut(s) 46, 454, 970, 1060, 1263, 1827, 1891, 1912
BssAI RCCGGY 2 cut(s) 1005, 1771
BssNI GRCGYC 1 cut(s) 1605
BssSI CACGAG 4 cut(s) 164, 1334, 1627, 2384
BssT1I CCWWGG 8 cut(s) 333, 356, 758, 876, 1012, 1351, 1612, 1725
Bst2BI CACGAG 4 cut(s) 164, 1334, 1627, 2384
Bst4CI ACNGT 7 cut(s) 686, 919, 1135, 1189, 1267, 1386, 1679
Bst6I CTCTTC 5 cut(s) 1476, 1502, 1638, 1832, 1910
BstACI GRCGYC 1 cut(s) 1605
BstAPI GCANNNNNTGC 1 cut(s) 2324
BstC8I GCNNGC 7 cut(s) 156, 281, 330, 987, 2316, 2433, 2557
BstDSI CCRYGG 6 cut(s) 333, 356, 1725, 2373, 2391, 2553
BstF5I GGATG 8 cut(s) 458, 463, 933, 1294, 1404, 1552, 1900, 2419
BstFNI CGCG 5 cut(s) 704, 1304, 2275, 2375, 2555
BstH2I RGCGCY 3 cut(s) 1331, 1505, 1949
BstHHI GCGC 4 cut(s) 1330, 1504, 1948, 2275
BstMAI GTCTC 7 cut(s) 206, 1416, 1640, 2138, 2335, 2525, 2583
BstMCI CGRYCG 3 cut(s) 796, 1006, 2092
BstNSI RCATGY 4 cut(s) 29, 1216, 1240, 1570
BstSFI CTRYAG 2 cut(s) 1382, 2316
BstSLI GKGCMC 2 cut(s) 297, 306
BstUI CGCG 5 cut(s) 704, 1304, 2275, 2375, 2555
BstV1I GCAGC 9 cut(s) 749, 1317, 1380, 1432, 1729, 2023, 2422, 2425, 2495
BstV2I GAAGAC 1 cut(s) 966
BstX2I RGATCY 4 cut(s) 817, 1109, 1841, 2068
BstXI CCANNNNNNTGG 4 cut(s) 357, 423, 546, 1907
BstYI RGATCY 4 cut(s) 817, 1109, 1841, 2068
Bsu15I ATCGAT 1 cut(s) 792
BsuI GTATCC 3 cut(s) 946, 1248, 1667
BsuTUI ATCGAT 1 cut(s) 792
BtgI CCRYGG 6 cut(s) 333, 356, 1725, 2373, 2391, 2553
BtrI CACGTC 1 cut(s) 1711
BtsCI GGATG 8 cut(s) 458, 463, 933, 1294, 1404, 1552, 1900, 2419
BtsI GCAGTG 1 cut(s) 2243
BtsIMutI CAGTG 5 cut(s) 1140, 1785, 1834, 1884, 2243
BtuMI TCGCGA 1 cut(s) 704
BveI ACCTGC 1 cut(s) 217
Cac8I GCNNGC 7 cut(s) 156, 281, 330, 987, 2316, 2433, 2557
CaiI CAGNNNCTG 3 cut(s) 1390, 2017, 2324
CciI TCATGA 1 cut(s) 2460
CfoI GCGC 4 cut(s) 1330, 1504, 1948, 2275
Cfr10I RCCGGY 2 cut(s) 1005, 1771
Cfr42I CCGCGG 2 cut(s) 2376, 2556
Cfr9I CCCGGG 6 cut(s) 290, 305, 1315, 1936, 2139, 2295
ClaI ATCGAT 1 cut(s) 792
CseI GACGC 1 cut(s) 232
CspAI ACCGGT 1 cut(s) 1005
DraIII CACNNNGTG 1 cut(s) 1714
DriI GACNNNNNGTC 1 cut(s) 1615
EaeI YGGCCR 4 cut(s) 1137, 1299, 1728, 1888
Eam1104I CTCTTC 5 cut(s) 1476, 1502, 1638, 1832, 1910
Eam1105I GACNNNNNGTC 1 cut(s) 1615
EarI CTCTTC 5 cut(s) 1476, 1502, 1638, 1832, 1910
Eco130I CCWWGG 8 cut(s) 333, 356, 758, 876, 1012, 1351, 1612, 1725
Eco147I AGGCCT 1 cut(s) 1121
Eco24I GRGCYC 3 cut(s) 37, 297, 389
Eco31I GGTCTC 3 cut(s) 1640, 2525, 2583
Eco47I GGWCC 5 cut(s) 644, 907, 1047, 1185, 2055
Eco57I CTGAAG 2 cut(s) 1011, 2093
EcoO109I RGGNCCY 3 cut(s) 294, 907, 1047
EcoT14I CCWWGG 8 cut(s) 333, 356, 758, 876, 1012, 1351, 1612, 1725
EcoT22I ATGCAT 1 cut(s) 655
EcoT38I GRGCYC 3 cut(s) 37, 297, 389
ErhI CCWWGG 8 cut(s) 333, 356, 758, 876, 1012, 1351, 1612, 1725
Esp3I CGTCTC 2 cut(s) 2138, 2335
FaqI GGGAC 8 cut(s) 235, 425, 440, 460, 893, 1198, 2216, 2312
FauI CCCGC 8 cut(s) 337, 1984, 2148, 2193, 2268, 2380, 2508, 2548
FblI GTMKAC 3 cut(s) 1023, 1233, 1608
FokI GGATG 8 cut(s) 465, 470, 940, 1301, 1411, 1559, 1907, 2426
FriOI GRGCYC 3 cut(s) 37, 297, 389
FspBI CTAG 6 cut(s) 192, 396, 408, 855, 1013, 1613
GlaI GCGC 4 cut(s) 1329, 1503, 1947, 2274
GsuI CTGGAG 5 cut(s) 217, 2210, 2378, 2546, 2567
HaeII RGCGCY 3 cut(s) 1331, 1505, 1949
HgaI GACGC 1 cut(s) 232
HhaI GCGC 4 cut(s) 1330, 1504, 1948, 2275
Hin1I GRCGYC 1 cut(s) 1605
Hin6I GCGC 4 cut(s) 1328, 1502, 1946, 2273
HinP1I GCGC 4 cut(s) 1328, 1502, 1946, 2273
HincII GTYRAC 1 cut(s) 1609
HindII GTYRAC 1 cut(s) 1609
HphI GGTGA 8 cut(s) 349, 1106, 1507, 1691, 1888, 1925, 2170, 2270
Hpy166II GTNNAC 8 cut(s) 347, 997, 1024, 1170, 1234, 1609, 1682, 1884
Hpy188I TCNGA 8 cut(s) 39, 237, 937, 1087, 1469, 2073, 2413, 2583
Hpy188III TCNNGA 6 cut(s) 703, 718, 1145, 2305, 2357, 2461
Hpy8I GTNNAC 8 cut(s) 347, 997, 1024, 1170, 1234, 1609, 1682, 1884
Hpy99I CGWCG 7 cut(s) 967, 1091, 1199, 1607, 1610, 1715, 1954
HpyCH4III ACNGT 7 cut(s) 686, 919, 1135, 1189, 1267, 1386, 1679
HpyCH4IV ACGT 4 cut(s) 96, 1605, 1710, 1880
HpyCH4V TGCA 6 cut(s) 653, 737, 1333, 1597, 1717, 2318
HpySE526I ACGT 4 cut(s) 96, 1605, 1710, 1880
Hsp92I GRCGYC 1 cut(s) 1605
HspAI GCGC 4 cut(s) 1328, 1502, 1946, 2273
KpnI GGTACC 5 cut(s) 482, 538, 602, 918, 1012
KspI CCGCGG 2 cut(s) 2376, 2556
LmnI GCTCC 5 cut(s) 1350, 1806, 2197, 2248, 2542
Lsp1109I GCAGC 9 cut(s) 749, 1317, 1380, 1432, 1729, 2023, 2422, 2425, 2495
LweI GCATC 6 cut(s) 228, 1389, 1540, 1579, 1684, 2142
MaeI CTAG 6 cut(s) 192, 396, 408, 855, 1013, 1613
MaeII ACGT 4 cut(s) 96, 1605, 1710, 1880
MaeIII GTNAC 6 cut(s) 115, 868, 1129, 1818, 1876, 2263
MbiI CCGCTC 1 cut(s) 2200
MflI RGATCY 4 cut(s) 817, 1109, 1841, 2068
MhlI GDGCHC 7 cut(s) 11, 37, 102, 165, 297, 306, 389
MlsI TGGCCA 1 cut(s) 1139
MluCI AATT 7 cut(s) 464, 520, 584, 665, 766, 1028, 2507
MluNI TGGCCA 1 cut(s) 1139
MlyI GAGTC 7 cut(s) 208, 754, 1091, 1639, 2198, 2330, 2345
MmeI TCCRAC 1 cut(s) 1110
Mox20I TGGCCA 1 cut(s) 1139
Mph1103I ATGCAT 1 cut(s) 655
MscI TGGCCA 1 cut(s) 1139
MseI TTAA 3 cut(s) 150, 669, 2469
MslI CAYNNNNRTG 2 cut(s) 1217, 1571
Msp20I TGGCCA 1 cut(s) 1139
MspA1I CMGCKG 3 cut(s) 1423, 2375, 2555
Mva1269I GAATGC 1 cut(s) 1152
MvnI CGCG 5 cut(s) 704, 1304, 2275, 2375, 2555
NcoI CCATGG 3 cut(s) 333, 356, 1725
NmeAIII GCCGAG 2 cut(s) 828, 1188
NmuCI GTSAC 2 cut(s) 1129, 1876
NruI TCGCGA 1 cut(s) 704
NsiI ATGCAT 1 cut(s) 655
NspI RCATGY 4 cut(s) 29, 1216, 1240, 1570
PagI TCATGA 1 cut(s) 2460
PasI CCCWGGG 2 cut(s) 297, 443
PceI AGGCCT 1 cut(s) 1121
PciI ACATGT 2 cut(s) 25, 1566
PcsI WCGNNNNNNNCGW 4 cut(s) 962, 1049, 1625, 2034
PctI GAATGC 1 cut(s) 1152
PfeI GAWTC 5 cut(s) 932, 1306, 1339, 2125, 2144
PflMI CCANNNNNTGG 1 cut(s) 1561
PfoI TCCNGGA 1 cut(s) 2523
PinAI ACCGGT 1 cut(s) 1005
Ple19I CGATCG 1 cut(s) 796
PleI GAGTC 7 cut(s) 207, 753, 1090, 1638, 2198, 2329, 2345
PpsI GAGTC 7 cut(s) 207, 753, 1090, 1638, 2198, 2329, 2345
PpuMI RGGWCCY 2 cut(s) 907, 1047
PscI ACATGT 2 cut(s) 25, 1566
Psp5II RGGWCCY 2 cut(s) 907, 1047
PspOMI GGGCCC 1 cut(s) 293
PspPPI RGGWCCY 2 cut(s) 907, 1047
PstI CTGCAG 1 cut(s) 2320
PstNI CAGNNNCTG 3 cut(s) 1390, 2017, 2324
PsuI RGATCY 4 cut(s) 817, 1109, 1841, 2068
PvuI CGATCG 1 cut(s) 796
PvuII CAGCTG 1 cut(s) 1423
RruI TCGCGA 1 cut(s) 704
RseI CAYNNNNRTG 2 cut(s) 1217, 1571
SacII CCGCGG 2 cut(s) 2376, 2556
SalI GTCGAC 1 cut(s) 1607
SaqAI TTAA 3 cut(s) 150, 669, 2469
SchI GAGTC 7 cut(s) 208, 754, 1091, 1639, 2198, 2330, 2345
SduI GDGCHC 7 cut(s) 11, 37, 102, 165, 297, 306, 389
SfaNI GCATC 6 cut(s) 228, 1389, 1540, 1579, 1684, 2142
SfcI CTRYAG 2 cut(s) 1382, 2316
Sfr303I CCGCGG 2 cut(s) 2376, 2556
SgrBI CCGCGG 2 cut(s) 2376, 2556
SinI GGWCC 5 cut(s) 644, 907, 1047, 1185, 2055
SmaI CCCGGG 6 cut(s) 292, 307, 1317, 1938, 2141, 2297
SmiMI CAYNNNNRTG 2 cut(s) 1217, 1571
SmlI CTYRAG 1 cut(s) 2252
SmoI CTYRAG 1 cut(s) 2252
Sse9I AATT 7 cut(s) 464, 520, 584, 665, 766, 1028, 2507
SseBI AGGCCT 1 cut(s) 1121
SspI AATATT 1 cut(s) 64
SspMI CTAG 6 cut(s) 192, 396, 408, 855, 1013, 1613
StuI AGGCCT 1 cut(s) 1121
StyI CCWWGG 8 cut(s) 333, 356, 758, 876, 1012, 1351, 1612, 1725
TaaI ACNGT 7 cut(s) 686, 919, 1135, 1189, 1267, 1386, 1679
TaiI ACGT 4 cut(s) 99, 1608, 1713, 1883
TaqII GACCGA 1 cut(s) 1623
TasI AATT 7 cut(s) 464, 520, 584, 665, 766, 1028, 2507
TatI WGTACW 1 cut(s) 2400
TauI GCSGC 5 cut(s) 177, 1243, 1304, 2228, 2555
TfiI GAWTC 5 cut(s) 932, 1306, 1339, 2125, 2144
Tru1I TTAA 3 cut(s) 150, 669, 2469
Tru9I TTAA 3 cut(s) 150, 669, 2469
TscAI CASTG 5 cut(s) 1140, 1785, 1834, 1891, 2243
TseFI GTSAC 2 cut(s) 1129, 1876
TseI GCWGC 9 cut(s) 737, 1330, 1393, 1420, 1717, 2011, 2435, 2438, 2483
Tsp45I GTSAC 2 cut(s) 1129, 1876
TspDTI ATGAA 6 cut(s) 1235, 1726, 2037, 2055, 2159, 2477
TspMI CCCGGG 6 cut(s) 290, 305, 1315, 1936, 2139, 2295
TspRI CASTG 5 cut(s) 1140, 1785, 1834, 1891, 2243
Van91I CCANNNNNTGG 1 cut(s) 1561
VpaK11BI GGWCC 5 cut(s) 644, 907, 1047, 1185, 2055
XapI RAATTY 5 cut(s) 464, 520, 584, 665, 2507
XceI RCATGY 4 cut(s) 29, 1216, 1240, 1570
XmaI CCCGGG 6 cut(s) 290, 305, 1315, 1936, 2139, 2295
XmaJI CCTAGG 2 cut(s) 1012, 1612
XmiI GTMKAC 3 cut(s) 1023, 1233, 1608
XspI CTAG 6 cut(s) 192, 396, 408, 855, 1013, 1613
ZraI GACGTC 1 cut(s) 1606
Zsp2I ATGCAT 1 cut(s) 655
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.