Rmu_sc0001069.1_g000021

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001069.1
OG0000087
Physical Location & Seq
Reverse (-)
76597 .. 82172
5576 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001069.1_g000021.1.cds

Sequence Viewer

Length: 1746 bp
atgcttcgtctcctccttctggactcgctagtggtggtgggtcgccgtgaatcgaccggaaaatgcaatttcgacgccgagaagcttacggttactgtagcagtttgggagttttgtcgatttccggccattccggccttctccggccaccaaaccggcgtcgaaggtgatgctgctaaaatttggtggccatcagaggtggtggcctccggctcgtggggcccacgcgctgccactgttggtggcgcatggaggcatgtagggcagtggcaatgttgcgagctacggctagatgaaggaacttgtttgcgtggtcgcccattagtacttctcccctatcctcgatgtgggacacatgttcttctgatgccatatcagtcctgtatttgtaaagatagatgggctgtgctggccttgccccgggccctgggtgcccggggtggcatcttatgtgaagcccgccatggtaagccactttcatgggacaatgaggctgtgcctgggactggatgggatggagagggtggcatcttatgtgaagcccgccatggtggggtaagccactttcatgggacaatgaggctgtgcctggtacccgatggggtagaagatttgagcctccggtacccaatggggtggagagagcttggctccgatacccgatggggtagaacatttgagactccctggtactcgatggggtgggcgttgcatgtcggcaacgtgggcagactaggttgtgcaataaatgcctgtcccttcttctgccgaggcttcgagaaatgggagaatgcgtgggacacgtgtagcgatcctacggcagaggtcgtttcgaagctcgagagatttggaaggtttgcagcgaagagaaagggagaaccaagggagaattgcgagtgcctgtggagcgagatcgatcgtctgccgaggaaaaggttagatctctctctgcctgtggattttacctattctcttgctaggtctgcttctgttactgccaaagaagttttctatatagcaagatttgaggtccccggtaccgtagttaggatggaatcagaagccaggggtggggatacgggatcgtcgtaccagtcttctgccaggcgagctgaaatggacatcgaccggtacctaggccgggtagaccaattagcggagaacacggggtcctcgactggggtgttctcggagagtagtggggagtccgacgagggtgagagcgagggtggatctgcggaggccccggtagttacagtggccattcccgaaggcattccgaagtcgaggtacacacttgcggatgggaccgtatgcgacgaacctgggagaagcatgacgatgaaggagatagtagacatgcggctgaagtgggggataccggacgcagtagagcttaggcctcttagggatggggaactggccgcaaatcctggcccggggatggatgatgctcaactgatggacatgctgatgagccagggagaagatgccctgcacatcaacgtcgacctagggtcgaaaggcacgagtcggtctatcgaaaagacccttttggagataaccgatgagggatacggtgaacctgatcccgacgctcctgtgacccacgtcgtgcagccctccatggccgatgtcattacgatagctgacaccggggcactcttcaatgtgtacgccagagacgccagcgaggaagatactcatctgaaggaggaggttagcaatctctccgggcaggtgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

581

Amino Acids

63.6

Weight (kDa)

5.01

Isoelectric Point (pI)

35.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000087)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28970 FvH4_2g03432 FvH4_2g17701 FvH4_4g10000 FvH4_4g15481 FvH4_4g15603 FvH4_6g16061 FvH4_6g25501
rosa_chinensis RchiOBHm_Chr2g0137471 RchiOBHm_Chr5g0054331
rosa_laevigata RLG00000019477 RLG00000022653 RLG00000029242
rosa_multiflora Rmu_co8012786.1_g000001 Rmu_co8165502.1_g000001 Rmu_co8383963.1_g000001 Rmu_co8428657.1_g000002 Rmu_co8441559.1_g000002 Rmu_co8493267.1_g000002 Rmu_co8512765.1_g000001 Rmu_co8522487.1_g000001 Rmu_sc0000045.1_g000034 Rmu_sc0000077.1_g000002 Rmu_sc0000177.1_g000003 Rmu_sc0000194.1_g000003 Rmu_sc0000239.1_g000073 Rmu_sc0000265.1_g000006 Rmu_sc0000271.1_g000031 Rmu_sc0000276.1_g000021 Rmu_sc0000279.1_g000008 Rmu_sc0000280.1_g000017 Rmu_sc0000315.1_g000047 Rmu_sc0000381.1_g000029 Rmu_sc0000423.1_g000013 Rmu_sc0000455.1_g000020 Rmu_sc0000596.1_g000032 Rmu_sc0000605.1_g000020 Rmu_sc0000643.1_g000006 Rmu_sc0000676.1_g000028 Rmu_sc0000698.1_g000063 Rmu_sc0000698.1_g000064 Rmu_sc0000706.1_g000030 Rmu_sc0000744.1_g000078 Rmu_sc0000744.1_g000098 Rmu_sc0000779.1_g000016 Rmu_sc0000808.1_g000006 Rmu_sc0000830.1_g000044 Rmu_sc0000842.1_g000021 Rmu_sc0000883.1_g000019 Rmu_sc0000904.1_g000013 Rmu_sc0000924.1_g000001 Rmu_sc0000959.1_g000012 Rmu_sc0001045.1_g000005 Rmu_sc0001069.1_g000021 Rmu_sc0001107.1_g000001 Rmu_sc0001155.1_g000006 Rmu_sc0001244.1_g000023 Rmu_sc0001302.1_g000017 Rmu_sc0001382.1_g000007 Rmu_sc0001393.1_g000026 Rmu_sc0001436.1_g000015 Rmu_sc0001464.1_g000021 Rmu_sc0001477.1_g000001 Rmu_sc0001483.1_g000024 Rmu_sc0001483.1_g000026 Rmu_sc0001499.1_g000020 Rmu_sc0001518.1_g000001 Rmu_sc0001520.1_g000003 Rmu_sc0001522.1_g000020 Rmu_sc0001529.1_g000008 Rmu_sc0001554.1_g000016 Rmu_sc0001563.1_g000018 Rmu_sc0001565.1_g000024 Rmu_sc0001578.1_g000014 Rmu_sc0001611.1_g000003 Rmu_sc0001700.1_g000026 Rmu_sc0001849.1_g000075 Rmu_sc0001866.1_g000011 Rmu_sc0001898.1_g000013 Rmu_sc0002029.1_g000007 Rmu_sc0002082.1_g000055 Rmu_sc0002206.1_g000032 Rmu_sc0002253.1_g000031 Rmu_sc0002264.1_g000020 Rmu_sc0002414.1_g000024 Rmu_sc0002451.1_g000063 Rmu_sc0002490.1_g000015 Rmu_sc0002539.1_g000010 Rmu_sc0002545.1_g000060 Rmu_sc0002564.1_g000020 Rmu_sc0002584.1_g000062 Rmu_sc0002669.1_g000034 Rmu_sc0002669.1_g000035 Rmu_sc0002690.1_g000010 Rmu_sc0002764.1_g000070 Rmu_sc0002786.1_g000006 Rmu_sc0002804.1_g000013 Rmu_sc0002868.1_g000015 Rmu_sc0002868.1_g000055 Rmu_sc0002889.1_g000039 Rmu_sc0002892.1_g000070 Rmu_sc0002926.1_g000001 Rmu_sc0002986.1_g000063 Rmu_sc0003032.1_g000023 Rmu_sc0003033.1_g000059 Rmu_sc0003063.1_g000022 Rmu_sc0003079.1_g000001 Rmu_sc0003092.1_g000012 Rmu_sc0003244.1_g000013 Rmu_sc0003276.1_g000004 Rmu_sc0003328.1_g000003 Rmu_sc0003352.1_g000034 Rmu_sc0003352.1_g000035 Rmu_sc0003419.1_g000038 Rmu_sc0003551.1_g000015 Rmu_sc0003669.1_g000036 Rmu_sc0003760.1_g000029 Rmu_sc0003781.1_g000021 Rmu_sc0003865.1_g000002 Rmu_sc0004012.1_g000010 Rmu_sc0004140.1_g000028 Rmu_sc0004152.1_g000002 Rmu_sc0004303.1_g000009 Rmu_sc0004336.1_g000039 Rmu_sc0004365.1_g000012 Rmu_sc0004365.1_g000013 Rmu_sc0004379.1_g000010 Rmu_sc0004529.1_g000017 Rmu_sc0004529.1_g000018 Rmu_sc0004536.1_g000025 Rmu_sc0004574.1_g000019 Rmu_sc0004602.1_g000042 Rmu_sc0004836.1_g000018 Rmu_sc0004841.1_g000037 Rmu_sc0004903.1_g000006 Rmu_sc0004977.1_g000006 Rmu_sc0005137.1_g000025 Rmu_sc0005292.1_g000031 Rmu_sc0005292.1_g000032 Rmu_sc0005353.1_g000014 Rmu_sc0005406.1_g000005 Rmu_sc0005469.1_g000016 Rmu_sc0005506.1_g000003 Rmu_sc0005507.1_g000003 Rmu_sc0005629.1_g000006 Rmu_sc0005664.1_g000033 Rmu_sc0005665.1_g000042 Rmu_sc0005685.1_g000003 Rmu_sc0006375.1_g000004 Rmu_sc0006444.1_g000020 Rmu_sc0006453.1_g000012 Rmu_sc0006676.1_g000013 Rmu_sc0006934.1_g000001 Rmu_sc0006945.1_g000001 Rmu_sc0006945.1_g000006 Rmu_sc0006954.1_g000015 Rmu_sc0007102.1_g000012 Rmu_sc0007144.1_g000007 Rmu_sc0007144.1_g000008 Rmu_sc0007230.1_g000003 Rmu_sc0007415.1_g000040 Rmu_sc0007729.1_g000001 Rmu_sc0007920.1_g000017 Rmu_sc0008058.1_g000023 Rmu_sc0008199.1_g000008 Rmu_sc0008232.1_g000010 Rmu_sc0008232.1_g000011 Rmu_sc0008336.1_g000011 Rmu_sc0008581.1_g000007 Rmu_sc0008623.1_g000002 Rmu_sc0009255.1_g000007 Rmu_sc0009479.1_g000008 Rmu_sc0009483.1_g000001 Rmu_sc0009641.1_g000001 Rmu_sc0009660.1_g000003 Rmu_sc0009978.1_g000010 Rmu_sc0010048.1_g000009 Rmu_sc0010547.1_g000007 Rmu_sc0010988.1_g000006 Rmu_sc0011148.1_g000003 Rmu_sc0011203.1_g000010 Rmu_sc0011375.1_g000004 Rmu_sc0011375.1_g000005 Rmu_sc0011559.1_g000005 Rmu_sc0012199.1_g000001 Rmu_sc0013224.1_g000005 Rmu_sc0013931.1_g000004 Rmu_sc0013931.1_g000005 Rmu_sc0013985.1_g000006 Rmu_sc0014406.1_g000001 Rmu_sc0014463.1_g000002 Rmu_sc0016218.1_g000005 Rmu_sc0019345.1_g000002 Rmu_sc0019655.1_g000001 Rmu_sc0020833.1_g000001 Rmu_sc0024204.1_g000001 Rmu_sc0024309.1_g000001 Rmu_sc0027177.1_g000002 Rmu_sc0027778.1_g000002 Rmu_sc0028215.1_g000001 Rmu_sc0029924.1_g000001 Rmu_sc0032552.1_g000001 Rmu_sc0036156.1_g000001 Rmu_sc0037073.1_g000001 Rmu_sc0040495.1_g000001 Rmu_ssc0000255.1_g000056 Rmu_ssc0000309.1_g000006 Rmu_ssc0000312.1_g000005 Rmu_ssc0000371.1_g000021 Rmu_ssc0000372.1_g000010 Rmu_ssc0000372.1_g000011 Rmu_ssc0000372.1_g000069 Rmu_ssc0000386.1_g000005 Rmu_ssc0000386.1_g000006 Rmu_ssc0000443.1_g000032
rosa_roxburghii Rroxscaffold_154G00447940 Rroxscaffold_1G00009660 Rroxscaffold_1G00016990 Rroxscaffold_1G00021370 Rroxscaffold_1G00037860 Rroxscaffold_2G00101680 Rroxscaffold_2G00101690 Rroxscaffold_2G00122690 Rroxscaffold_2G00122700 Rroxscaffold_2G00123340 Rroxscaffold_2G00123350 Rroxscaffold_2G00125480 Rroxscaffold_2G00136130 Rroxscaffold_2G00146590 Rroxscaffold_3G00218350 Rroxscaffold_3G00218360 Rroxscaffold_3G00218370 Rroxscaffold_3G00218380 Rroxscaffold_3G00232530 Rroxscaffold_3G00262600 Rroxscaffold_3G00263070 Rroxscaffold_4G00289030 Rroxscaffold_4G00296530 Rroxscaffold_4G00306140 Rroxscaffold_4G00306150 Rroxscaffold_4G00306380 Rroxscaffold_4G00306390 Rroxscaffold_4G00306400 Rroxscaffold_4G00309560 Rroxscaffold_4G00316600 Rroxscaffold_4G00322820 Rroxscaffold_4G00322830 Rroxscaffold_4G00324370 Rroxscaffold_4G00332350 Rroxscaffold_5G00346450 Rroxscaffold_5G00352960 Rroxscaffold_5G00352970 Rroxscaffold_5G00360310 Rroxscaffold_5G00373670 Rroxscaffold_5G00378610 Rroxscaffold_5G00378940 Rroxscaffold_6G00388240 Rroxscaffold_6G00389010 Rroxscaffold_6G00389030 Rroxscaffold_6G00399900 Rroxscaffold_6G00399910 Rroxscaffold_6G00400260 Rroxscaffold_6G00400270 Rroxscaffold_6G00400280 Rroxscaffold_7G00164100 Rroxscaffold_7G00176300 Rroxscaffold_7G00176310 Rroxscaffold_7G00177210 Rroxscaffold_7G00204300 Rroxscaffold_7G00204310 Rroxscaffold_7G00204320
rosa_rugosa Rorug06G0076500
rosa_samantha Rh1AG108400 Rh2AG377100 Rh2AG377200 Rh2BG383500 Rh2CG362800 Rh2DG399900 Rh2DG439600 Rh2DG672800 Rh6DG186300 Rh7AG351400 Rh7BG368500 Rh7CG368800 Rh7CG411100 Rh7DG424400
rosa_wichuraiana Rw1G021100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1729
Acc36I ACCTGC 1 cut(s) 1729
Acc65I GGTACC 4 cut(s) 592, 624, 1037, 1131
AccB1I GGYRCC 5 cut(s) 431, 592, 624, 1037, 1131
AccI GTMKAC 3 cut(s) 1146, 1356, 1509
AccII CGCG 1 cut(s) 228
AciI CCGC 7 cut(s) 460, 544, 1157, 1238, 1301, 1363, 1425
AclWI GGATC 4 cut(s) 806, 1090, 1240, 1583
AcoI YGGCCR 6 cut(s) 126, 145, 188, 1260, 1422, 1629
AcsI RAATTY 1 cut(s) 180
AcuI CTGAAG 2 cut(s) 1388, 1730
AcvI CACGTG 1 cut(s) 804
AcyI GRCGYC 3 cut(s) 75, 159, 1686
AdeI CACNNNGTG 1 cut(s) 1615
AfaI GTAC 9 cut(s) 327, 594, 626, 692, 1039, 1091, 1133, 1292, 1676
AflIII ACRYGT 3 cut(s) 355, 801, 803
AgeI ACCGGT 1 cut(s) 1128
AgsI TTSAA 1 cut(s) 1669
AhdI GACNNNNNGTC 1 cut(s) 1516
AjiI CACGTC 1 cut(s) 1612
AjnI CCWGG 9 cut(s) 426, 499, 588, 686, 1064, 1103, 1324, 1432, 1479
AjuI GAANNNNNNNTTGG 2 cut(s) 992, 1024
AloI GAACNNNNNNTCC 2 cut(s) 1154, 1186
AluBI AGCT 7 cut(s) 85, 283, 646, 838, 1112, 1396, 1649
AluI AGCT 7 cut(s) 85, 283, 646, 838, 1112, 1396, 1649
Alw26I GTCTC 3 cut(s) 14, 674, 1677
AlwI GGATC 4 cut(s) 806, 1090, 1240, 1583
Ama87I CYCGRG 4 cut(s) 420, 435, 839, 1438
ApaI GGGCCC 2 cut(s) 224, 427
ApeKI GCWGC 4 cut(s) 173, 230, 860, 1618
ApoI RAATTY 1 cut(s) 180
AsiGI ACCGGT 1 cut(s) 1128
Asp700I GAANNNNTTC 1 cut(s) 1275
Asp718I GGTACC 4 cut(s) 592, 624, 1037, 1131
AspA2I CCTAGG 2 cut(s) 1135, 1513
AspLEI GCGC 2 cut(s) 230, 248
AspS9I GGNCC 9 cut(s) 220, 221, 423, 424, 1030, 1170, 1243, 1308, 1436
AsuHPI GGTGA 3 cut(s) 179, 1229, 1592
AsuII TTCGAA 1 cut(s) 833
AvaI CYCGRG 4 cut(s) 420, 435, 839, 1438
AvaII GGWCC 3 cut(s) 1030, 1170, 1308
AvrII CCTAGG 2 cut(s) 1135, 1513
BaeGI GKGCMC 4 cut(s) 224, 427, 436, 1663
BaeI ACNNNNGTAYC 2 cut(s) 1029, 1062
BalI TGGCCA 2 cut(s) 190, 1262
BanI GGYRCC 5 cut(s) 431, 592, 624, 1037, 1131
BanII GRGCYC 2 cut(s) 224, 427
BarI GAAGNNNNNNTAC 2 cut(s) 1274, 1306
BauI CACGAG 2 cut(s) 214, 1528
BbrPI CACGTG 1 cut(s) 804
BbsI GAAGAC 1 cut(s) 1089
BbvI GCAGC 4 cut(s) 160, 217, 872, 1630
BceAI ACGGC 3 cut(s) 30, 302, 834
BcgI CGANNNNNNTGC 2 cut(s) 152, 186
BciT130I CCWGG 9 cut(s) 428, 501, 590, 688, 1066, 1105, 1326, 1434, 1481
BciVI GTATCC 3 cut(s) 1069, 1371, 1568
BcoDI GTCTC 3 cut(s) 14, 674, 1677
BfaI CTAG 6 cut(s) 29, 290, 734, 978, 1136, 1514
BfmI CTRYAG 1 cut(s) 96
BfuAI ACCTGC 1 cut(s) 1729
BfuI GTATCC 3 cut(s) 1069, 1371, 1568
BglI GCCNNNNNGGC 1 cut(s) 134
BglII AGATCT 1 cut(s) 940
BisI GCNGC 6 cut(s) 174, 231, 861, 1364, 1425, 1619
BlnI CCTAGG 2 cut(s) 1135, 1513
BlsI GCNGC 6 cut(s) 175, 232, 862, 1365, 1426, 1620
BmcAI AGTACT 1 cut(s) 327
Bme18I GGWCC 3 cut(s) 1030, 1170, 1308
BmeRI GACNNNNNGTC 1 cut(s) 1516
BmeT110I CYCGRG 4 cut(s) 420, 435, 839, 1438
BmgBI CACGTC 1 cut(s) 1612
BmgT120I GGNCC 9 cut(s) 220, 221, 423, 424, 1030, 1170, 1243, 1308, 1436
BmrI ACTGGG 1 cut(s) 1188
BmsI GCATC 6 cut(s) 160, 357, 453, 537, 1441, 1480
BmuI ACTGGG 1 cut(s) 1188
BoxI GACNNNNGTC 1 cut(s) 1610
BpiI GAAGAC 1 cut(s) 1089
BplI GAGNNNNNCTC 2 cut(s) 635, 667
Bpu10I CCTNAGC 1 cut(s) 1397
Bpu14I TTCGAA 1 cut(s) 833
Bsa29I ATCGAT 1 cut(s) 915
BsaAI YACGTR 1 cut(s) 804
BsaBI GATNNNNATC 1 cut(s) 1704
BsaHI GRCGYC 3 cut(s) 75, 159, 1686
BsaWI WCCGGW 4 cut(s) 56, 621, 1128, 1381
BsaXI ACNNNNNCTCC 2 cut(s) 779, 809
Bse118I RCCGGY 2 cut(s) 155, 1128
Bse1I ACTGG 4 cut(s) 511, 1093, 1183, 1425
Bse3DI GCAATG 1 cut(s) 278
Bse8I GATNNNNATC 1 cut(s) 1704
BseBI CCWGG 9 cut(s) 428, 501, 590, 688, 1066, 1105, 1326, 1434, 1481
BseCI ATCGAT 1 cut(s) 915
BseGI GGATG 7 cut(s) 515, 520, 1056, 1309, 1417, 1449, 1453
BseJI GATNNNNATC 1 cut(s) 1704
BseMI GCAATG 1 cut(s) 278
BseNI ACTGG 4 cut(s) 511, 1093, 1183, 1425
BseRI GAGGAG 1 cut(s) 1730
BseSI GKGCMC 4 cut(s) 224, 427, 436, 1663
BseXI GCAGC 4 cut(s) 160, 217, 872, 1630
BsgI GTGCAG 2 cut(s) 1481, 1637
Bsh1236I CGCG 1 cut(s) 228
Bsh1285I CGRYCG 3 cut(s) 57, 919, 1129
BshNI GGYRCC 5 cut(s) 431, 592, 624, 1037, 1131
BshTI ACCGGT 1 cut(s) 1128
BshVI ATCGAT 1 cut(s) 915
BsiEI CGRYCG 3 cut(s) 57, 919, 1129
BsiHKCI CYCGRG 4 cut(s) 420, 435, 839, 1438
BslFI GGGAC 8 cut(s) 364, 497, 517, 586, 741, 812, 1016, 1321
BsmAI GTCTC 3 cut(s) 14, 674, 1677
BsmBI CGTCTC 2 cut(s) 14, 1677
BsmFI GGGAC 8 cut(s) 364, 497, 517, 586, 741, 812, 1016, 1321
BsmI GAATGC 2 cut(s) 796, 1275
BsoBI CYCGRG 4 cut(s) 420, 435, 839, 1438
Bsp119I TTCGAA 1 cut(s) 833
Bsp120I GGGCCC 2 cut(s) 220, 423
Bsp1286I GDGCHC 4 cut(s) 224, 427, 436, 1663
Bsp143I GATC 7 cut(s) 811, 912, 916, 940, 1082, 1232, 1588
Bsp19I CCATGG 3 cut(s) 463, 547, 1626
BspACI CCGC 7 cut(s) 460, 544, 1157, 1238, 1301, 1363, 1425
BspDI ATCGAT 1 cut(s) 915
BspFNI CGCG 1 cut(s) 228
BspMI ACCTGC 1 cut(s) 1729
BspPI GGATC 4 cut(s) 806, 1090, 1240, 1583
BspT104I TTCGAA 1 cut(s) 833
BspT107I GGYRCC 5 cut(s) 431, 592, 624, 1037, 1131
BsrDI GCAATG 1 cut(s) 278
BsrFI RCCGGY 2 cut(s) 155, 1128
BsrI ACTGG 4 cut(s) 511, 1093, 1183, 1425
BssAI RCCGGY 2 cut(s) 155, 1128
BssMI GATC 7 cut(s) 811, 912, 916, 940, 1082, 1232, 1588
BssNI GRCGYC 3 cut(s) 75, 159, 1686
BssSI CACGAG 2 cut(s) 214, 1528
BssT1I CCWWGG 6 cut(s) 463, 547, 881, 1135, 1513, 1626
Bst2BI CACGAG 2 cut(s) 214, 1528
Bst2UI CCWGG 9 cut(s) 428, 501, 590, 688, 1066, 1105, 1326, 1434, 1481
Bst4CI ACNGT 7 cut(s) 91, 97, 238, 1042, 1258, 1312, 1580
Bst6I CTCTTC 2 cut(s) 860, 1670
BstACI GRCGYC 3 cut(s) 75, 159, 1686
BstAPI GCANNNNNTGC 1 cut(s) 749
BstBAI YACGTR 1 cut(s) 804
BstBI TTCGAA 1 cut(s) 833
BstC8I GCNNGC 6 cut(s) 281, 411, 460, 544, 1110, 1690
BstDEI CTNAG 2 cut(s) 1397, 1406
BstDSI CCRYGG 3 cut(s) 463, 547, 1626
BstF5I GGATG 7 cut(s) 515, 520, 1056, 1309, 1417, 1449, 1453
BstFNI CGCG 1 cut(s) 228
BstHHI GCGC 2 cut(s) 230, 248
BstKTI GATC 7 cut(s) 814, 915, 919, 943, 1085, 1235, 1591
BstMAI GTCTC 3 cut(s) 14, 674, 1677
BstMBI GATC 7 cut(s) 811, 912, 916, 940, 1082, 1232, 1588
BstMCI CGRYCG 3 cut(s) 57, 919, 1129
BstNI CCWGG 9 cut(s) 428, 501, 590, 688, 1066, 1105, 1326, 1434, 1481
BstNSI RCATGY 5 cut(s) 260, 359, 716, 1363, 1471
BstPAI GACNNNNGTC 1 cut(s) 1610
BstSFI CTRYAG 1 cut(s) 96
BstSLI GKGCMC 4 cut(s) 224, 427, 436, 1663
BstUI CGCG 1 cut(s) 228
BstV1I GCAGC 4 cut(s) 160, 217, 872, 1630
BstV2I GAAGAC 1 cut(s) 1089
BstX2I RGATCY 2 cut(s) 940, 1232
BstXI CCANNNNNNTGG 3 cut(s) 480, 569, 636
BstYI RGATCY 2 cut(s) 940, 1232
Bsu15I ATCGAT 1 cut(s) 915
BsuI GTATCC 3 cut(s) 1069, 1371, 1568
BsuTUI ATCGAT 1 cut(s) 915
BtgI CCRYGG 3 cut(s) 463, 547, 1626
BtrI CACGTC 1 cut(s) 1612
BtsCI GGATG 7 cut(s) 515, 520, 1056, 1309, 1417, 1449, 1453
BtsI GCAGTG 1 cut(s) 272
BtsIMutI CAGTG 3 cut(s) 234, 272, 1263
BveI ACCTGC 1 cut(s) 1729
Cac8I GCNNGC 6 cut(s) 281, 411, 460, 544, 1110, 1690
CfoI GCGC 2 cut(s) 230, 248
Cfr10I RCCGGY 2 cut(s) 155, 1128
Cfr13I GGNCC 9 cut(s) 220, 221, 423, 424, 1030, 1170, 1243, 1308, 1436
Cfr9I CCCGGG 3 cut(s) 420, 435, 1438
ClaI ATCGAT 1 cut(s) 915
CseI GACGC 5 cut(s) 83, 148, 1394, 1604, 1694
Csp6I GTAC 9 cut(s) 326, 593, 625, 691, 1038, 1090, 1132, 1291, 1675
CspAI ACCGGT 1 cut(s) 1128
CviQI GTAC 9 cut(s) 326, 593, 625, 691, 1038, 1090, 1132, 1291, 1675
DdeI CTNAG 2 cut(s) 1397, 1406
DpnI GATC 7 cut(s) 813, 914, 918, 942, 1084, 1234, 1590
DpnII GATC 7 cut(s) 811, 912, 916, 940, 1082, 1232, 1588
DraIII CACNNNGTG 1 cut(s) 1615
DriI GACNNNNNGTC 1 cut(s) 1516
EaeI YGGCCR 6 cut(s) 126, 145, 188, 1260, 1422, 1629
Eam1104I CTCTTC 2 cut(s) 860, 1670
Eam1105I GACNNNNNGTC 1 cut(s) 1516
EarI CTCTTC 2 cut(s) 860, 1670
Eco130I CCWWGG 6 cut(s) 463, 547, 881, 1135, 1513, 1626
Eco147I AGGCCT 1 cut(s) 1402
Eco24I GRGCYC 2 cut(s) 224, 427
Eco47I GGWCC 3 cut(s) 1030, 1170, 1308
Eco57I CTGAAG 2 cut(s) 1388, 1730
Eco72I CACGTG 1 cut(s) 804
Eco88I CYCGRG 4 cut(s) 420, 435, 839, 1438
EcoO109I RGGNCCY 5 cut(s) 220, 424, 1030, 1170, 1243
EcoRII CCWGG 9 cut(s) 426, 499, 588, 686, 1064, 1103, 1324, 1432, 1479
EcoT14I CCWWGG 6 cut(s) 463, 547, 881, 1135, 1513, 1626
EcoT38I GRGCYC 2 cut(s) 224, 427
ErhI CCWWGG 6 cut(s) 463, 547, 881, 1135, 1513, 1626
Esp3I CGTCTC 2 cut(s) 14, 1677
FaqI GGGAC 8 cut(s) 364, 497, 517, 586, 741, 812, 1016, 1321
FauI CCCGC 2 cut(s) 467, 551
FblI GTMKAC 3 cut(s) 1146, 1356, 1509
Fnu4HI GCNGC 6 cut(s) 174, 231, 861, 1364, 1425, 1619
FokI GGATG 7 cut(s) 522, 527, 1063, 1316, 1424, 1456, 1460
FriOI GRGCYC 2 cut(s) 224, 427
Fsp4HI GCNGC 6 cut(s) 174, 231, 861, 1364, 1425, 1619
FspBI CTAG 6 cut(s) 29, 290, 734, 978, 1136, 1514
GlaI GCGC 2 cut(s) 229, 247
GluI GCNGC 6 cut(s) 174, 231, 861, 1364, 1425, 1619
HgaI GACGC 5 cut(s) 83, 148, 1394, 1604, 1694
HhaI GCGC 2 cut(s) 230, 248
Hin1I GRCGYC 3 cut(s) 75, 159, 1686
Hin6I GCGC 2 cut(s) 228, 246
HinP1I GCGC 2 cut(s) 228, 246
HincII GTYRAC 1 cut(s) 1510
HindII GTYRAC 1 cut(s) 1510
HindIII AAGCTT 1 cut(s) 83
HinfI GANTC 6 cut(s) 23, 50, 682, 1055, 1205, 1531
HphI GGTGA 3 cut(s) 179, 1229, 1592
Hpy166II GTNNAC 6 cut(s) 1147, 1293, 1357, 1510, 1583, 1675
Hpy188I TCNGA 8 cut(s) 196, 366, 655, 1060, 1192, 1210, 1281, 1710
Hpy188III TCNNGA 5 cut(s) 20, 778, 841, 1268, 1592
Hpy8I GTNNAC 6 cut(s) 1147, 1293, 1357, 1510, 1583, 1675
Hpy99I CGWCG 8 cut(s) 77, 164, 1090, 1214, 1322, 1511, 1598, 1616
HpyAV CCTTC 9 cut(s) 26, 148, 158, 290, 769, 846, 1265, 1339, 1705
HpyCH4III ACNGT 7 cut(s) 91, 97, 238, 1042, 1258, 1312, 1580
HpyCH4IV ACGT 4 cut(s) 723, 803, 1506, 1611
HpyCH4V TGCA 6 cut(s) 66, 712, 743, 860, 1498, 1618
HpyF3I CTNAG 2 cut(s) 1397, 1406
HpySE526I ACGT 4 cut(s) 723, 803, 1506, 1611
Hsp92I GRCGYC 3 cut(s) 75, 159, 1686
HspAI GCGC 2 cut(s) 228, 246
KpnI GGTACC 4 cut(s) 596, 628, 1041, 1135
Kzo9I GATC 7 cut(s) 811, 912, 916, 940, 1082, 1232, 1588
LmnI GCTCC 3 cut(s) 656, 906, 1603
Lsp1109I GCAGC 4 cut(s) 160, 217, 872, 1630
LweI GCATC 6 cut(s) 160, 357, 453, 537, 1441, 1480
MaeI CTAG 6 cut(s) 29, 290, 734, 978, 1136, 1514
MaeII ACGT 4 cut(s) 723, 803, 1506, 1611
MaeIII GTNAC 4 cut(s) 91, 991, 1252, 1603
MalI GATC 7 cut(s) 813, 914, 918, 942, 1084, 1234, 1590
MboI GATC 7 cut(s) 811, 912, 916, 940, 1082, 1232, 1588
MboII GAAGA 8 cut(s) 353, 620, 754, 877, 1089, 1499, 1657, 1709
MflI RGATCY 2 cut(s) 940, 1232
MhlI GDGCHC 4 cut(s) 224, 427, 436, 1663
MlsI TGGCCA 2 cut(s) 190, 1262
MluCI AATT 4 cut(s) 67, 180, 889, 1151
MluNI TGGCCA 2 cut(s) 190, 1262
MlyI GAGTC 4 cut(s) 17, 676, 1214, 1540
MmeI TCCRAC 1 cut(s) 1233
Mox20I TGGCCA 2 cut(s) 190, 1262
MroXI GAANNNNTTC 1 cut(s) 1275
MscI TGGCCA 2 cut(s) 190, 1262
MslI CAYNNNNRTG 4 cut(s) 478, 567, 1340, 1472
Msp20I TGGCCA 2 cut(s) 190, 1262
Mva1269I GAATGC 2 cut(s) 796, 1275
MvaI CCWGG 9 cut(s) 428, 501, 590, 688, 1066, 1105, 1326, 1434, 1481
MvnI CGCG 1 cut(s) 228
NcoI CCATGG 3 cut(s) 463, 547, 1626
NdeII GATC 7 cut(s) 811, 912, 916, 940, 1082, 1232, 1588
NmeAIII GCCGAG 3 cut(s) 103, 794, 951
NmuCI GTSAC 1 cut(s) 1603
NspI RCATGY 5 cut(s) 260, 359, 716, 1363, 1471
NspV TTCGAA 1 cut(s) 833
PaeR7I CTCGAG 1 cut(s) 839
PaqCI CACCTGC 1 cut(s) 1729
PasI CCCWGGG 1 cut(s) 427
PceI AGGCCT 1 cut(s) 1402
PciI ACATGT 1 cut(s) 355
PcsI WCGNNNNNNNCGW 3 cut(s) 1085, 1172, 1526
PctI GAATGC 2 cut(s) 796, 1275
PdmI GAANNNNTTC 1 cut(s) 1275
PfeI GAWTC 2 cut(s) 50, 1055
PinAI ACCGGT 1 cut(s) 1128
PkrI GCNGC 6 cut(s) 175, 232, 862, 1365, 1426, 1620
Ple19I CGATCG 1 cut(s) 919
PleI GAGTC 4 cut(s) 17, 676, 1213, 1539
PmaCI CACGTG 1 cut(s) 804
PmlI CACGTG 1 cut(s) 804
PpsI GAGTC 4 cut(s) 17, 676, 1213, 1539
Ppu21I YACGTR 1 cut(s) 804
PpuMI RGGWCCY 2 cut(s) 1030, 1170
PscI ACATGT 1 cut(s) 355
PshAI GACNNNNGTC 1 cut(s) 1610
Psp5II RGGWCCY 2 cut(s) 1030, 1170
Psp6I CCWGG 9 cut(s) 426, 499, 588, 686, 1064, 1103, 1324, 1432, 1479
PspCI CACGTG 1 cut(s) 804
PspGI CCWGG 9 cut(s) 426, 499, 588, 686, 1064, 1103, 1324, 1432, 1479
PspOMI GGGCCC 2 cut(s) 220, 423
PspPI GGNCC 9 cut(s) 220, 221, 423, 424, 1030, 1170, 1243, 1308, 1436
PspPPI RGGWCCY 2 cut(s) 1030, 1170
PsuI RGATCY 2 cut(s) 940, 1232
PvuI CGATCG 1 cut(s) 919
RsaI GTAC 9 cut(s) 327, 594, 626, 692, 1039, 1091, 1133, 1292, 1676
RsaNI GTAC 9 cut(s) 326, 593, 625, 691, 1038, 1090, 1132, 1291, 1675
RseI CAYNNNNRTG 4 cut(s) 478, 567, 1340, 1472
SalI GTCGAC 1 cut(s) 1508
SatI GCNGC 6 cut(s) 174, 231, 861, 1364, 1425, 1619
Sau3AI GATC 7 cut(s) 811, 912, 916, 940, 1082, 1232, 1588
Sau96I GGNCC 9 cut(s) 220, 221, 423, 424, 1030, 1170, 1243, 1308, 1436
ScaI AGTACT 1 cut(s) 327
SchI GAGTC 4 cut(s) 17, 676, 1214, 1540
SduI GDGCHC 4 cut(s) 224, 427, 436, 1663
SfaNI GCATC 6 cut(s) 160, 357, 453, 537, 1441, 1480
SfcI CTRYAG 1 cut(s) 96
SfiI GGCCNNNNNGGCC 1 cut(s) 134
Sfr274I CTCGAG 1 cut(s) 839
SfuI TTCGAA 1 cut(s) 833
SinI GGWCC 3 cut(s) 1030, 1170, 1308
SlaI CTCGAG 1 cut(s) 839
SmaI CCCGGG 3 cut(s) 422, 437, 1440
SmiMI CAYNNNNRTG 4 cut(s) 478, 567, 1340, 1472
SmlI CTYRAG 1 cut(s) 839
SmoI CTYRAG 1 cut(s) 839
Sse9I AATT 4 cut(s) 67, 180, 889, 1151
SseBI AGGCCT 1 cut(s) 1402
SsiI CCGC 7 cut(s) 460, 544, 1157, 1238, 1301, 1363, 1425
SspMI CTAG 6 cut(s) 29, 290, 734, 978, 1136, 1514
StuI AGGCCT 1 cut(s) 1402
StyI CCWWGG 6 cut(s) 463, 547, 881, 1135, 1513, 1626
TaaI ACNGT 7 cut(s) 91, 97, 238, 1042, 1258, 1312, 1580
TaiI ACGT 4 cut(s) 726, 806, 1509, 1614
TaqII GACCGA 1 cut(s) 1524
TasI AATT 4 cut(s) 67, 180, 889, 1151
TatI WGTACW 1 cut(s) 325
TauI GCSGC 2 cut(s) 1366, 1427
TfiI GAWTC 2 cut(s) 50, 1055
TscAI CASTG 3 cut(s) 241, 272, 1263
TseFI GTSAC 1 cut(s) 1603
TseI GCWGC 4 cut(s) 173, 230, 860, 1618
Tsp45I GTSAC 1 cut(s) 1603
TspDTI ATGAA 4 cut(s) 309, 468, 557, 1358
TspMI CCCGGG 3 cut(s) 420, 435, 1438
TspRI CASTG 3 cut(s) 241, 272, 1263
VpaK11BI GGWCC 3 cut(s) 1030, 1170, 1308
XapI RAATTY 1 cut(s) 180
XceI RCATGY 5 cut(s) 260, 359, 716, 1363, 1471
XhoI CTCGAG 1 cut(s) 839
XmaI CCCGGG 3 cut(s) 420, 435, 1438
XmaJI CCTAGG 2 cut(s) 1135, 1513
XmiI GTMKAC 3 cut(s) 1146, 1356, 1509
XmnI GAANNNNTTC 1 cut(s) 1275
XspI CTAG 6 cut(s) 29, 290, 734, 978, 1136, 1514
ZrmI AGTACT 1 cut(s) 327
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.