Rmu_sc0002889.1_g000039

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002889.1
OG0000087
Physical Location & Seq
Reverse (-)
140532 .. 142336
1805 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002889.1_g000039.1.cds

Sequence Viewer

Length: 1503 bp
atgctgaacctgtcaccggggcagttgaccccgaatgccattcgtcaaatatacagtatgatggccatgtgggacttgtgcgaacaagggtggccttccataaacgaattccgcgcggtacaccgggtactggactcaaggaagcagtcttgtgcgggtacggttacttttgccgctagggactacgagccactagttaccgacatgcctacctcgatgagcaaaaggtgggggaacaaagtgttcctagctggggggcggtggcaaattaaaaataagaagtggcagctgaccgtgaaagcgccgaagaggaaaccccggaaaggcaaggaggaggatagaatggatgatgcccaattgatggacatgctgatgggccagggagaggacgcctttcacatcaatgtcgacctagggtcgaaaggcacgagtcggtcacttgaagaaactcttctggagatcaccgatgaggaatatggtgagcctgaccccgacgctcccgtgacccacgtcccgcagccttccatggccgatgttatcacgatagatgacaccgggatgggaaaagtaccggtctccttgcctatttcctctcgttccactgggagcgatgaggcactacttcctggtgagaagaagagatcccataggcaccggcatcggactgataaggaggtgacgtgccctagccgcgatgttcaaggtattggtgtgaagaggcagaagaaagatcacccgggacctgagtcgtcgcctttgcttggcctgttatctcccgccattccggtaatccccaagaagcccatcaagcagctgctgagtgagtacggggttgctgatgagaagttcgtacggtccatgcttggggatctgaaggatattgacctcgaccgggttcgggccaaggataatactcccccggagaatcgccgtcttgcccgggagtcaatgatgcgggcactcttcaatgtgtacgccattgacgccagcgaggaagatactcatccgaaggaggaggttagcaatctctctgggcaggtgaagtatcttcatggcgagaaggccaagctggagaaggaacgggagtcattgagggctgaaatggccgcggctaagcagcggatcgcggagcttgagggtgaagtcgcggaggcgcgggaagaggtaaaaaacgcccgggactccgagaaaaaggctgcagagtctgccgtttcatggaaggagaaggcagacaatctggaggatcgccttcccgtggagaagcacgaggccgtggaggagtacaagtcctccgaagagctcatctctatgctggctgctgcccaagataaggctgtcatcctgaagttcaaggagtgggtggcggccggatatttagatgaagctaaattcagccggggtctcctggagaaaaaagaaagaaagatcggggggcggcggccaagtctggtgccggtgggtcccagagtaccggtggcgatcggttgtaaaaaaaatttttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_28

Protein Analysis

500

Amino Acids

56.05

Weight (kDa)

7.66

Isoelectric Point (pI)

49.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000087)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28970 FvH4_2g03432 FvH4_2g17701 FvH4_4g10000 FvH4_4g15481 FvH4_4g15603 FvH4_6g16061 FvH4_6g25501
rosa_chinensis RchiOBHm_Chr2g0137471 RchiOBHm_Chr5g0054331
rosa_laevigata RLG00000019477 RLG00000022653 RLG00000029242
rosa_multiflora Rmu_co8012786.1_g000001 Rmu_co8165502.1_g000001 Rmu_co8383963.1_g000001 Rmu_co8428657.1_g000002 Rmu_co8441559.1_g000002 Rmu_co8493267.1_g000002 Rmu_co8512765.1_g000001 Rmu_co8522487.1_g000001 Rmu_sc0000045.1_g000034 Rmu_sc0000077.1_g000002 Rmu_sc0000177.1_g000003 Rmu_sc0000194.1_g000003 Rmu_sc0000239.1_g000073 Rmu_sc0000265.1_g000006 Rmu_sc0000271.1_g000031 Rmu_sc0000276.1_g000021 Rmu_sc0000279.1_g000008 Rmu_sc0000280.1_g000017 Rmu_sc0000315.1_g000047 Rmu_sc0000381.1_g000029 Rmu_sc0000423.1_g000013 Rmu_sc0000455.1_g000020 Rmu_sc0000596.1_g000032 Rmu_sc0000605.1_g000020 Rmu_sc0000643.1_g000006 Rmu_sc0000676.1_g000028 Rmu_sc0000698.1_g000063 Rmu_sc0000698.1_g000064 Rmu_sc0000706.1_g000030 Rmu_sc0000744.1_g000078 Rmu_sc0000744.1_g000098 Rmu_sc0000779.1_g000016 Rmu_sc0000808.1_g000006 Rmu_sc0000830.1_g000044 Rmu_sc0000842.1_g000021 Rmu_sc0000883.1_g000019 Rmu_sc0000904.1_g000013 Rmu_sc0000924.1_g000001 Rmu_sc0000959.1_g000012 Rmu_sc0001045.1_g000005 Rmu_sc0001069.1_g000021 Rmu_sc0001107.1_g000001 Rmu_sc0001155.1_g000006 Rmu_sc0001244.1_g000023 Rmu_sc0001302.1_g000017 Rmu_sc0001382.1_g000007 Rmu_sc0001393.1_g000026 Rmu_sc0001436.1_g000015 Rmu_sc0001464.1_g000021 Rmu_sc0001477.1_g000001 Rmu_sc0001483.1_g000024 Rmu_sc0001483.1_g000026 Rmu_sc0001499.1_g000020 Rmu_sc0001518.1_g000001 Rmu_sc0001520.1_g000003 Rmu_sc0001522.1_g000020 Rmu_sc0001529.1_g000008 Rmu_sc0001554.1_g000016 Rmu_sc0001563.1_g000018 Rmu_sc0001565.1_g000024 Rmu_sc0001578.1_g000014 Rmu_sc0001611.1_g000003 Rmu_sc0001700.1_g000026 Rmu_sc0001849.1_g000075 Rmu_sc0001866.1_g000011 Rmu_sc0001898.1_g000013 Rmu_sc0002029.1_g000007 Rmu_sc0002082.1_g000055 Rmu_sc0002206.1_g000032 Rmu_sc0002253.1_g000031 Rmu_sc0002264.1_g000020 Rmu_sc0002414.1_g000024 Rmu_sc0002451.1_g000063 Rmu_sc0002490.1_g000015 Rmu_sc0002539.1_g000010 Rmu_sc0002545.1_g000060 Rmu_sc0002564.1_g000020 Rmu_sc0002584.1_g000062 Rmu_sc0002669.1_g000034 Rmu_sc0002669.1_g000035 Rmu_sc0002690.1_g000010 Rmu_sc0002764.1_g000070 Rmu_sc0002786.1_g000006 Rmu_sc0002804.1_g000013 Rmu_sc0002868.1_g000015 Rmu_sc0002868.1_g000055 Rmu_sc0002889.1_g000039 Rmu_sc0002892.1_g000070 Rmu_sc0002926.1_g000001 Rmu_sc0002986.1_g000063 Rmu_sc0003032.1_g000023 Rmu_sc0003033.1_g000059 Rmu_sc0003063.1_g000022 Rmu_sc0003079.1_g000001 Rmu_sc0003092.1_g000012 Rmu_sc0003244.1_g000013 Rmu_sc0003276.1_g000004 Rmu_sc0003328.1_g000003 Rmu_sc0003352.1_g000034 Rmu_sc0003352.1_g000035 Rmu_sc0003419.1_g000038 Rmu_sc0003551.1_g000015 Rmu_sc0003669.1_g000036 Rmu_sc0003760.1_g000029 Rmu_sc0003781.1_g000021 Rmu_sc0003865.1_g000002 Rmu_sc0004012.1_g000010 Rmu_sc0004140.1_g000028 Rmu_sc0004152.1_g000002 Rmu_sc0004303.1_g000009 Rmu_sc0004336.1_g000039 Rmu_sc0004365.1_g000012 Rmu_sc0004365.1_g000013 Rmu_sc0004379.1_g000010 Rmu_sc0004529.1_g000017 Rmu_sc0004529.1_g000018 Rmu_sc0004536.1_g000025 Rmu_sc0004574.1_g000019 Rmu_sc0004602.1_g000042 Rmu_sc0004836.1_g000018 Rmu_sc0004841.1_g000037 Rmu_sc0004903.1_g000006 Rmu_sc0004977.1_g000006 Rmu_sc0005137.1_g000025 Rmu_sc0005292.1_g000031 Rmu_sc0005292.1_g000032 Rmu_sc0005353.1_g000014 Rmu_sc0005406.1_g000005 Rmu_sc0005469.1_g000016 Rmu_sc0005506.1_g000003 Rmu_sc0005507.1_g000003 Rmu_sc0005629.1_g000006 Rmu_sc0005664.1_g000033 Rmu_sc0005665.1_g000042 Rmu_sc0005685.1_g000003 Rmu_sc0006375.1_g000004 Rmu_sc0006444.1_g000020 Rmu_sc0006453.1_g000012 Rmu_sc0006676.1_g000013 Rmu_sc0006934.1_g000001 Rmu_sc0006945.1_g000001 Rmu_sc0006945.1_g000006 Rmu_sc0006954.1_g000015 Rmu_sc0007102.1_g000012 Rmu_sc0007144.1_g000007 Rmu_sc0007144.1_g000008 Rmu_sc0007230.1_g000003 Rmu_sc0007415.1_g000040 Rmu_sc0007729.1_g000001 Rmu_sc0007920.1_g000017 Rmu_sc0008058.1_g000023 Rmu_sc0008199.1_g000008 Rmu_sc0008232.1_g000010 Rmu_sc0008232.1_g000011 Rmu_sc0008336.1_g000011 Rmu_sc0008581.1_g000007 Rmu_sc0008623.1_g000002 Rmu_sc0009255.1_g000007 Rmu_sc0009479.1_g000008 Rmu_sc0009483.1_g000001 Rmu_sc0009641.1_g000001 Rmu_sc0009660.1_g000003 Rmu_sc0009978.1_g000010 Rmu_sc0010048.1_g000009 Rmu_sc0010547.1_g000007 Rmu_sc0010988.1_g000006 Rmu_sc0011148.1_g000003 Rmu_sc0011203.1_g000010 Rmu_sc0011375.1_g000004 Rmu_sc0011375.1_g000005 Rmu_sc0011559.1_g000005 Rmu_sc0012199.1_g000001 Rmu_sc0013224.1_g000005 Rmu_sc0013931.1_g000004 Rmu_sc0013931.1_g000005 Rmu_sc0013985.1_g000006 Rmu_sc0014406.1_g000001 Rmu_sc0014463.1_g000002 Rmu_sc0016218.1_g000005 Rmu_sc0019345.1_g000002 Rmu_sc0019655.1_g000001 Rmu_sc0020833.1_g000001 Rmu_sc0024204.1_g000001 Rmu_sc0024309.1_g000001 Rmu_sc0027177.1_g000002 Rmu_sc0027778.1_g000002 Rmu_sc0028215.1_g000001 Rmu_sc0029924.1_g000001 Rmu_sc0032552.1_g000001 Rmu_sc0036156.1_g000001 Rmu_sc0037073.1_g000001 Rmu_sc0040495.1_g000001 Rmu_ssc0000255.1_g000056 Rmu_ssc0000309.1_g000006 Rmu_ssc0000312.1_g000005 Rmu_ssc0000371.1_g000021 Rmu_ssc0000372.1_g000010 Rmu_ssc0000372.1_g000011 Rmu_ssc0000372.1_g000069 Rmu_ssc0000386.1_g000005 Rmu_ssc0000386.1_g000006 Rmu_ssc0000443.1_g000032
rosa_roxburghii Rroxscaffold_154G00447940 Rroxscaffold_1G00009660 Rroxscaffold_1G00016990 Rroxscaffold_1G00021370 Rroxscaffold_1G00037860 Rroxscaffold_2G00101680 Rroxscaffold_2G00101690 Rroxscaffold_2G00122690 Rroxscaffold_2G00122700 Rroxscaffold_2G00123340 Rroxscaffold_2G00123350 Rroxscaffold_2G00125480 Rroxscaffold_2G00136130 Rroxscaffold_2G00146590 Rroxscaffold_3G00218350 Rroxscaffold_3G00218360 Rroxscaffold_3G00218370 Rroxscaffold_3G00218380 Rroxscaffold_3G00232530 Rroxscaffold_3G00262600 Rroxscaffold_3G00263070 Rroxscaffold_4G00289030 Rroxscaffold_4G00296530 Rroxscaffold_4G00306140 Rroxscaffold_4G00306150 Rroxscaffold_4G00306380 Rroxscaffold_4G00306390 Rroxscaffold_4G00306400 Rroxscaffold_4G00309560 Rroxscaffold_4G00316600 Rroxscaffold_4G00322820 Rroxscaffold_4G00322830 Rroxscaffold_4G00324370 Rroxscaffold_4G00332350 Rroxscaffold_5G00346450 Rroxscaffold_5G00352960 Rroxscaffold_5G00352970 Rroxscaffold_5G00360310 Rroxscaffold_5G00373670 Rroxscaffold_5G00378610 Rroxscaffold_5G00378940 Rroxscaffold_6G00388240 Rroxscaffold_6G00389010 Rroxscaffold_6G00389030 Rroxscaffold_6G00399900 Rroxscaffold_6G00399910 Rroxscaffold_6G00400260 Rroxscaffold_6G00400270 Rroxscaffold_6G00400280 Rroxscaffold_7G00164100 Rroxscaffold_7G00176300 Rroxscaffold_7G00176310 Rroxscaffold_7G00177210 Rroxscaffold_7G00204300 Rroxscaffold_7G00204310 Rroxscaffold_7G00204320
rosa_rugosa Rorug06G0076500
rosa_samantha Rh1AG108400 Rh2AG377100 Rh2AG377200 Rh2BG383500 Rh2CG362800 Rh2DG399900 Rh2DG439600 Rh2DG672800 Rh6DG186300 Rh7AG351400 Rh7BG368500 Rh7CG368800 Rh7CG411100 Rh7DG424400
rosa_wichuraiana Rw1G021100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1027
Acc36I ACCTGC 1 cut(s) 1027
AccB1I GGYRCC 2 cut(s) 651, 1450
AccB7I CCANNNNNTGG 1 cut(s) 361
AccI GTMKAC 1 cut(s) 408
AccII CGCG 7 cut(s) 114, 116, 693, 1109, 1127, 1148, 1156
AclWI GGATC 4 cut(s) 636, 876, 1130, 1251
AcoI YGGCCR 5 cut(s) 63, 528, 1104, 1365, 1439
AcsI RAATTY 3 cut(s) 107, 1388, 1495
AcuI CTGAAG 2 cut(s) 893, 1364
AcyI GRCGYC 2 cut(s) 390, 984
AfaI GTAC 9 cut(s) 120, 129, 160, 570, 827, 852, 974, 1283, 1470
AgeI ACCGGT 2 cut(s) 571, 1471
AgsI TTSAA 4 cut(s) 443, 701, 967, 1351
AhdI GACNNNNNGTC 1 cut(s) 415
AhlI ACTAGT 1 cut(s) 193
AjiI CACGTC 2 cut(s) 511, 681
AjnI CCWGG 3 cut(s) 378, 625, 1404
AluBI AGCT 7 cut(s) 251, 289, 814, 1069, 1132, 1300, 1385
AluI AGCT 7 cut(s) 251, 289, 814, 1069, 1132, 1300, 1385
Alw21I GWGCWC 1 cut(s) 1302
Alw26I GTCTC 2 cut(s) 580, 1406
AlwI GGATC 4 cut(s) 636, 876, 1130, 1251
AlwNI CAGNNNCTG 2 cut(s) 817, 1205
Ama87I CYCGRG 3 cut(s) 736, 939, 1176
ApeKI GCWGC 8 cut(s) 286, 517, 811, 814, 1117, 1196, 1316, 1319
ApoI RAATTY 3 cut(s) 107, 1388, 1495
AsiGI ACCGGT 2 cut(s) 571, 1471
Asp700I GAANNNNTTC 1 cut(s) 450
AspA2I CCTAGG 1 cut(s) 412
AspLEI GCGC 3 cut(s) 116, 304, 1156
AspS9I GGNCC 5 cut(s) 376, 740, 855, 900, 1460
AsuHPI GGTGA 8 cut(s) 6, 454, 491, 641, 688, 725, 1051, 1151
AvaI CYCGRG 3 cut(s) 736, 939, 1176
AvaII GGWCC 3 cut(s) 740, 855, 1460
AvrII CCTAGG 1 cut(s) 412
BaeGI GKGCMC 2 cut(s) 686, 961
BalI TGGCCA 1 cut(s) 65
BanI GGYRCC 2 cut(s) 651, 1450
BanII GRGCYC 1 cut(s) 1302
BauI CACGAG 2 cut(s) 427, 1265
Bbv12I GWGCWC 1 cut(s) 1302
BbvI GCAGC 8 cut(s) 298, 529, 801, 823, 1129, 1183, 1303, 1306
BccI CCATC 5 cut(s) 55, 355, 367, 553, 812
BceAI ACGGC 3 cut(s) 915, 1193, 1256
BcgI CGANNNNNNTGC 2 cut(s) 641, 675
BciT130I CCWGG 3 cut(s) 380, 627, 1406
BcoDI GTCTC 2 cut(s) 580, 1406
BcuI ACTAGT 1 cut(s) 193
BfaI CTAG 5 cut(s) 177, 194, 248, 413, 687
BfmI CTRYAG 1 cut(s) 1197
BfoI RGCGCY 1 cut(s) 305
BfuAI ACCTGC 1 cut(s) 1027
BlnI CCTAGG 1 cut(s) 412
BlpI GCTNAGC 1 cut(s) 1113
Bme18I GGWCC 3 cut(s) 740, 855, 1460
BmeRI GACNNNNNGTC 1 cut(s) 415
BmeT110I CYCGRG 3 cut(s) 736, 939, 1176
BmgBI CACGTC 2 cut(s) 511, 681
BmgT120I GGNCC 5 cut(s) 376, 740, 855, 900, 1460
BmiI GGNNCC 5 cut(s) 653, 741, 1452, 1461, 1462
BmrI ACTGGG 1 cut(s) 612
BmsI GCATC 3 cut(s) 340, 667, 942
BmuI ACTGGG 1 cut(s) 612
BoxI GACNNNNGTC 2 cut(s) 509, 745
BplI GAGNNNNNCTC 2 cut(s) 1289, 1321
BpmI CTGGAG 4 cut(s) 476, 1091, 1259, 1427
Bpu1102I GCTNAGC 1 cut(s) 1113
BpuEI CTTGAG 2 cut(s) 121, 1154
BsaBI GATNNNNATC 1 cut(s) 1002
BsaHI GRCGYC 2 cut(s) 390, 984
BsaI GGTCTC 2 cut(s) 580, 1406
BsaWI WCCGGW 3 cut(s) 571, 784, 1471
BsaXI ACNNNNNCTCC 6 cut(s) 665, 695, 1271, 1274, 1301, 1304
Bse118I RCCGGY 4 cut(s) 571, 654, 1453, 1471
Bse1I ACTGG 2 cut(s) 135, 607
Bse8I GATNNNNATC 1 cut(s) 1002
BseBI CCWGG 3 cut(s) 380, 627, 1406
BseGI GGATG 4 cut(s) 352, 564, 1003, 1338
BseJI GATNNNNATC 1 cut(s) 1002
BseMII CTCAG 2 cut(s) 735, 809
BseNI ACTGG 2 cut(s) 135, 607
BseRI GAGGAG 3 cut(s) 347, 1028, 1292
BseSI GKGCMC 2 cut(s) 686, 961
BseX3I CGGCCG 1 cut(s) 1365
BseXI GCAGC 8 cut(s) 298, 529, 801, 823, 1129, 1183, 1303, 1306
BseYI CCCAGC 1 cut(s) 251
Bsh1236I CGCG 7 cut(s) 114, 116, 693, 1109, 1127, 1148, 1156
Bsh1285I CGRYCG 3 cut(s) 892, 1368, 1482
BshNI GGYRCC 2 cut(s) 651, 1450
BshTI ACCGGT 2 cut(s) 571, 1471
BsiEI CGRYCG 3 cut(s) 892, 1368, 1482
BsiHKAI GWGCWC 1 cut(s) 1302
BsiHKCI CYCGRG 3 cut(s) 736, 939, 1176
BsiWI CGTACG 1 cut(s) 850
BslFI GGGAC 6 cut(s) 86, 194, 497, 753, 1193, 1446
BsmAI GTCTC 2 cut(s) 580, 1406
BsmFI GGGAC 6 cut(s) 86, 194, 497, 753, 1193, 1446
BsmI GAATGC 1 cut(s) 40
Bso31I GGTCTC 2 cut(s) 580, 1406
BsoBI CYCGRG 3 cut(s) 736, 939, 1176
Bsp1286I GDGCHC 3 cut(s) 686, 961, 1302
Bsp143I GATC 8 cut(s) 459, 641, 730, 868, 1122, 1243, 1425, 1479
Bsp1720I GCTNAGC 1 cut(s) 1113
Bsp19I CCATGG 1 cut(s) 525
BspCNI CTCAG 2 cut(s) 736, 810
BspFNI CGCG 7 cut(s) 114, 116, 693, 1109, 1127, 1148, 1156
BspLI GGNNCC 5 cut(s) 653, 741, 1452, 1461, 1462
BspMAI CTGCAG 1 cut(s) 1201
BspMI ACCTGC 1 cut(s) 1027
BspPI GGATC 4 cut(s) 636, 876, 1130, 1251
BspQI GCTCTTC 1 cut(s) 1290
BspT107I GGYRCC 2 cut(s) 651, 1450
BspTNI GGTCTC 2 cut(s) 580, 1406
BsrFI RCCGGY 4 cut(s) 571, 654, 1453, 1471
BsrI ACTGG 2 cut(s) 135, 607
BssAI RCCGGY 4 cut(s) 571, 654, 1453, 1471
BssMI GATC 8 cut(s) 459, 641, 730, 868, 1122, 1243, 1425, 1479
BssNI GRCGYC 2 cut(s) 390, 984
BssSI CACGAG 2 cut(s) 427, 1265
BssT1I CCWWGG 3 cut(s) 412, 525, 903
Bst2BI CACGAG 2 cut(s) 427, 1265
Bst2UI CCWGG 3 cut(s) 380, 627, 1406
Bst4CI ACNGT 4 cut(s) 56, 163, 295, 855
Bst6I CTCTTC 7 cut(s) 302, 456, 632, 710, 968, 1155, 1290
BstACI GRCGYC 2 cut(s) 390, 984
BstAPI GCANNNNNTGC 1 cut(s) 1205
BstC8I GCNNGC 3 cut(s) 957, 988, 1314
BstDEI CTNAG 3 cut(s) 744, 818, 1113
BstDSI CCRYGG 4 cut(s) 525, 1107, 1254, 1272
BstF5I GGATG 4 cut(s) 352, 564, 1003, 1338
BstFNI CGCG 7 cut(s) 114, 116, 693, 1109, 1127, 1148, 1156
BstH2I RGCGCY 1 cut(s) 305
BstHHI GCGC 3 cut(s) 116, 304, 1156
BstKTI GATC 8 cut(s) 462, 644, 733, 871, 1125, 1246, 1428, 1482
BstMAI GTCTC 2 cut(s) 580, 1406
BstMBI GATC 8 cut(s) 459, 641, 730, 868, 1122, 1243, 1425, 1479
BstMCI CGRYCG 3 cut(s) 892, 1368, 1482
BstMWI GCNNNNNNNGC 5 cut(s) 690, 808, 983, 1103, 1205
BstNI CCWGG 3 cut(s) 380, 627, 1406
BstNSI RCATGY 2 cut(s) 208, 370
BstPAI GACNNNNGTC 2 cut(s) 509, 745
BstSFI CTRYAG 1 cut(s) 1197
BstSLI GKGCMC 2 cut(s) 686, 961
BstUI CGCG 7 cut(s) 114, 116, 693, 1109, 1127, 1148, 1156
BstV1I GCAGC 8 cut(s) 298, 529, 801, 823, 1129, 1183, 1303, 1306
BstX2I RGATCY 2 cut(s) 641, 868
BstYI RGATCY 2 cut(s) 641, 868
BstZI CGGCCG 1 cut(s) 1365
BtgI CCRYGG 4 cut(s) 525, 1107, 1254, 1272
BtgZI GCGATG 2 cut(s) 624, 708
BtrI CACGTC 2 cut(s) 511, 681
BtsCI GGATG 4 cut(s) 352, 564, 1003, 1338
BtsIMutI CAGTG 1 cut(s) 600
BveI ACCTGC 1 cut(s) 1027
Cac8I GCNNGC 3 cut(s) 957, 988, 1314
CaiI CAGNNNCTG 2 cut(s) 817, 1205
CfoI GCGC 3 cut(s) 116, 304, 1156
Cfr10I RCCGGY 4 cut(s) 571, 654, 1453, 1471
Cfr13I GGNCC 5 cut(s) 376, 740, 855, 900, 1460
Cfr42I CCGCGG 1 cut(s) 1110
Cfr9I CCCGGG 3 cut(s) 736, 939, 1176
CseI GACGC 3 cut(s) 398, 503, 992
Csp6I GTAC 9 cut(s) 119, 128, 159, 569, 826, 851, 973, 1282, 1469
CspAI ACCGGT 2 cut(s) 571, 1471
CviAII CATG 7 cut(s) 67, 205, 367, 526, 859, 1052, 1215
CviQI GTAC 9 cut(s) 119, 128, 159, 569, 826, 851, 973, 1282, 1469
DdeI CTNAG 3 cut(s) 744, 818, 1113
DpnI GATC 8 cut(s) 461, 643, 732, 870, 1124, 1245, 1427, 1481
DpnII GATC 8 cut(s) 459, 641, 730, 868, 1122, 1243, 1425, 1479
DriI GACNNNNNGTC 1 cut(s) 415
EaeI YGGCCR 5 cut(s) 63, 528, 1104, 1365, 1439
EagI CGGCCG 1 cut(s) 1365
Eam1104I CTCTTC 7 cut(s) 302, 456, 632, 710, 968, 1155, 1290
Eam1105I GACNNNNNGTC 1 cut(s) 415
EarI CTCTTC 7 cut(s) 302, 456, 632, 710, 968, 1155, 1290
Ecl136II GAGCTC 1 cut(s) 1300
EclXI CGGCCG 1 cut(s) 1365
Eco130I CCWWGG 3 cut(s) 412, 525, 903
Eco24I GRGCYC 1 cut(s) 1302
Eco31I GGTCTC 2 cut(s) 580, 1406
Eco47I GGWCC 3 cut(s) 740, 855, 1460
Eco52I CGGCCG 1 cut(s) 1365
Eco53kI GAGCTC 1 cut(s) 1300
Eco57I CTGAAG 2 cut(s) 893, 1364
Eco88I CYCGRG 3 cut(s) 736, 939, 1176
EcoICRI GAGCTC 1 cut(s) 1300
EcoO109I RGGNCCY 2 cut(s) 740, 1460
EcoRI GAATTC 1 cut(s) 107
EcoRII CCWGG 3 cut(s) 378, 625, 1404
EcoT14I CCWWGG 3 cut(s) 412, 525, 903
EcoT38I GRGCYC 1 cut(s) 1302
ErhI CCWWGG 3 cut(s) 412, 525, 903
FaeI CATG 7 cut(s) 70, 208, 370, 529, 862, 1055, 1218
FalI AAGNNNNNCTT 2 cut(s) 435, 467
FaqI GGGAC 6 cut(s) 86, 194, 497, 753, 1193, 1446
FatI CATG 7 cut(s) 66, 204, 366, 525, 858, 1051, 1214
FauI CCCGC 5 cut(s) 148, 522, 784, 948, 1149
FblI GTMKAC 1 cut(s) 408
FokI GGATG 4 cut(s) 359, 571, 990, 1325
FriOI GRGCYC 1 cut(s) 1302
FspBI CTAG 5 cut(s) 177, 194, 248, 413, 687
GlaI GCGC 3 cut(s) 115, 303, 1155
GsaI CCCAGC 1 cut(s) 255
GsuI CTGGAG 4 cut(s) 476, 1091, 1259, 1427
HaeII RGCGCY 1 cut(s) 305
HgaI GACGC 3 cut(s) 398, 503, 992
HhaI GCGC 3 cut(s) 116, 304, 1156
Hin1I GRCGYC 2 cut(s) 390, 984
Hin1II CATG 7 cut(s) 70, 208, 370, 529, 862, 1055, 1218
Hin6I GCGC 3 cut(s) 114, 302, 1154
HinP1I GCGC 3 cut(s) 114, 302, 1154
HincII GTYRAC 2 cut(s) 27, 409
HindII GTYRAC 2 cut(s) 27, 409
HinfI GANTC 8 cut(s) 134, 430, 746, 925, 944, 1085, 1181, 1202
HphI GGTGA 8 cut(s) 6, 454, 491, 641, 688, 725, 1051, 1151
Hpy166II GTNNAC 4 cut(s) 27, 121, 409, 973
Hpy188I TCNGA 5 cut(s) 663, 873, 1008, 1186, 1294
Hpy188III TCNNGA 4 cut(s) 455, 541, 1238, 1342
Hpy8I GTNNAC 4 cut(s) 27, 121, 409, 973
Hpy99I CGWCG 2 cut(s) 497, 754
HpyAV CCTTC 9 cut(s) 105, 531, 868, 1003, 1054, 1069, 1213, 1219, 1259
HpyCH4III ACNGT 4 cut(s) 56, 163, 295, 855
HpyCH4IV ACGT 2 cut(s) 510, 680
HpyCH4V TGCA 1 cut(s) 1199
HpyF10VI GCNNNNNNNGC 5 cut(s) 690, 808, 983, 1103, 1205
HpyF3I CTNAG 3 cut(s) 744, 818, 1113
HpySE526I ACGT 2 cut(s) 510, 680
Hsp92I GRCGYC 2 cut(s) 390, 984
Hsp92II CATG 7 cut(s) 70, 208, 370, 529, 862, 1055, 1218
HspAI GCGC 3 cut(s) 114, 302, 1154
KflI GGGWCCC 1 cut(s) 1460
KspI CCGCGG 1 cut(s) 1110
Kzo9I GATC 8 cut(s) 459, 641, 730, 868, 1122, 1243, 1425, 1479
LguI GCTCTTC 1 cut(s) 1290
LmnI GCTCC 3 cut(s) 502, 606, 1129
Lsp1109I GCAGC 8 cut(s) 298, 529, 801, 823, 1129, 1183, 1303, 1306
LweI GCATC 3 cut(s) 340, 667, 942
MaeI CTAG 5 cut(s) 177, 194, 248, 413, 687
MaeII ACGT 2 cut(s) 510, 680
MaeIII GTNAC 6 cut(s) 12, 163, 196, 435, 502, 676
MalI GATC 8 cut(s) 461, 643, 732, 870, 1124, 1245, 1427, 1481
MboI GATC 8 cut(s) 459, 641, 730, 868, 1122, 1243, 1425, 1479
MfeI CAATTG 1 cut(s) 356
MflI RGATCY 2 cut(s) 641, 868
MhlI GDGCHC 3 cut(s) 686, 961, 1302
MlsI TGGCCA 1 cut(s) 65
MluCI AATT 5 cut(s) 107, 267, 356, 1388, 1495
MluNI TGGCCA 1 cut(s) 65
MlyI GAGTC 7 cut(s) 128, 439, 755, 953, 1094, 1175, 1211
Mox20I TGGCCA 1 cut(s) 65
MroXI GAANNNNTTC 1 cut(s) 450
MscI TGGCCA 1 cut(s) 65
MseI TTAA 1 cut(s) 270
MslI CAYNNNNRTG 4 cut(s) 371, 402, 557, 1307
Msp20I TGGCCA 1 cut(s) 65
MspA1I CMGCKG 4 cut(s) 289, 814, 1109, 1120
MunI CAATTG 1 cut(s) 356
Mva1269I GAATGC 1 cut(s) 40
MvaI CCWGG 3 cut(s) 380, 627, 1406
MvnI CGCG 7 cut(s) 114, 116, 693, 1109, 1127, 1148, 1156
MwoI GCNNNNNNNGC 5 cut(s) 690, 808, 983, 1103, 1205
NcoI CCATGG 1 cut(s) 525
NdeII GATC 8 cut(s) 459, 641, 730, 868, 1122, 1243, 1425, 1479
NlaIII CATG 7 cut(s) 70, 208, 370, 529, 862, 1055, 1218
NlaIV GGNNCC 5 cut(s) 653, 741, 1452, 1461, 1462
NmuCI GTSAC 4 cut(s) 12, 435, 502, 676
NspI RCATGY 2 cut(s) 208, 370
PaqCI CACCTGC 1 cut(s) 1027
PciSI GCTCTTC 1 cut(s) 1290
PcsI WCGNNNNNNNCGW 1 cut(s) 425
PctI GAATGC 1 cut(s) 40
PdmI GAANNNNTTC 1 cut(s) 450
PfeI GAWTC 1 cut(s) 925
Pfl23II CGTACG 1 cut(s) 850
PflMI CCANNNNNTGG 1 cut(s) 361
PfoI TCCNGGA 1 cut(s) 1404
PinAI ACCGGT 2 cut(s) 571, 1471
Ple19I CGATCG 1 cut(s) 1482
PleI GAGTC 7 cut(s) 128, 438, 754, 952, 1093, 1175, 1210
PpsI GAGTC 7 cut(s) 128, 438, 754, 952, 1093, 1175, 1210
PpuMI RGGWCCY 2 cut(s) 740, 1460
PshAI GACNNNNGTC 2 cut(s) 509, 745
Psp124BI GAGCTC 1 cut(s) 1302
Psp5II RGGWCCY 2 cut(s) 740, 1460
Psp6I CCWGG 3 cut(s) 378, 625, 1404
PspFI CCCAGC 1 cut(s) 251
PspGI CCWGG 3 cut(s) 378, 625, 1404
PspLI CGTACG 1 cut(s) 850
PspN4I GGNNCC 5 cut(s) 653, 741, 1452, 1461, 1462
PspPI GGNCC 5 cut(s) 376, 740, 855, 900, 1460
PspPPI RGGWCCY 2 cut(s) 740, 1460
PstI CTGCAG 1 cut(s) 1201
PstNI CAGNNNCTG 2 cut(s) 817, 1205
PsuI RGATCY 2 cut(s) 641, 868
PvuI CGATCG 1 cut(s) 1482
PvuII CAGCTG 2 cut(s) 289, 814
RsaI GTAC 9 cut(s) 120, 129, 160, 570, 827, 852, 974, 1283, 1470
RsaNI GTAC 9 cut(s) 119, 128, 159, 569, 826, 851, 973, 1282, 1469
RseI CAYNNNNRTG 4 cut(s) 371, 402, 557, 1307
SacI GAGCTC 1 cut(s) 1302
SacII CCGCGG 1 cut(s) 1110
SalI GTCGAC 1 cut(s) 407
SapI GCTCTTC 1 cut(s) 1290
SaqAI TTAA 1 cut(s) 270
Sau3AI GATC 8 cut(s) 459, 641, 730, 868, 1122, 1243, 1425, 1479
Sau96I GGNCC 5 cut(s) 376, 740, 855, 900, 1460
SchI GAGTC 7 cut(s) 128, 439, 755, 953, 1094, 1175, 1211
SduI GDGCHC 3 cut(s) 686, 961, 1302
SfaNI GCATC 3 cut(s) 340, 667, 942
SfcI CTRYAG 1 cut(s) 1197
Sfr303I CCGCGG 1 cut(s) 1110
SgrBI CCGCGG 1 cut(s) 1110
SinI GGWCC 3 cut(s) 740, 855, 1460
SmaI CCCGGG 3 cut(s) 738, 941, 1178
SmiMI CAYNNNNRTG 4 cut(s) 371, 402, 557, 1307
SmlI CTYRAG 2 cut(s) 136, 1133
SmoI CTYRAG 2 cut(s) 136, 1133
SpeI ACTAGT 1 cut(s) 193
Sse9I AATT 5 cut(s) 107, 267, 356, 1388, 1495
SspMI CTAG 5 cut(s) 177, 194, 248, 413, 687
SstI GAGCTC 1 cut(s) 1302
StyI CCWWGG 3 cut(s) 412, 525, 903
TaaI ACNGT 4 cut(s) 56, 163, 295, 855
TaiI ACGT 2 cut(s) 513, 683
TaqI TCGA 4 cut(s) 215, 408, 419, 888
TaqII GACCGA 1 cut(s) 423
TasI AATT 5 cut(s) 107, 267, 356, 1388, 1495
TatI WGTACW 1 cut(s) 1281
TauI GCSGC 7 cut(s) 176, 693, 1109, 1112, 1367, 1438, 1441
TfiI GAWTC 1 cut(s) 925
Tru1I TTAA 1 cut(s) 270
Tru9I TTAA 1 cut(s) 270
TscAI CASTG 1 cut(s) 607
TseFI GTSAC 4 cut(s) 12, 435, 502, 676
TseI GCWGC 8 cut(s) 286, 517, 811, 814, 1117, 1196, 1316, 1319
Tsp45I GTSAC 4 cut(s) 12, 435, 502, 676
TspDTI ATGAA 3 cut(s) 1040, 1203, 1395
TspMI CCCGGG 3 cut(s) 736, 939, 1176
TspRI CASTG 1 cut(s) 607
Van91I CCANNNNNTGG 1 cut(s) 361
VpaK11BI GGWCC 3 cut(s) 740, 855, 1460
XapI RAATTY 3 cut(s) 107, 1388, 1495
XceI RCATGY 2 cut(s) 208, 370
XcmI CCANNNNNNNNNTGG 1 cut(s) 1471
XmaI CCCGGG 3 cut(s) 736, 939, 1176
XmaJI CCTAGG 1 cut(s) 412
XmiI GTMKAC 1 cut(s) 408
XmnI GAANNNNTTC 1 cut(s) 450
XspI CTAG 5 cut(s) 177, 194, 248, 413, 687
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.