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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 655 |
| Acc36I | ACCTGC | 1 cut(s) | 655 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 77 |
| AccII | CGCG | 1 cut(s) | 662 |
| AciI | CCGC | 6 cut(s) | 394, 441, 504, 660, 662, 689 |
| AcoI | YGGCCR | 1 cut(s) | 412 |
| AcsI | RAATTY | 1 cut(s) | 322 |
| AfaI | GTAC | 1 cut(s) | 43 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 77, 421, 446, 447, 650 |
| AflIII | ACRYGT | 2 cut(s) | 65, 85 |
| AgeI | ACCGGT | 1 cut(s) | 299 |
| AgsI | TTSAA | 2 cut(s) | 367, 560 |
| AjnI | CCWGG | 2 cut(s) | 226, 535 |
| Alw26I | GTCTC | 3 cut(s) | 168, 422, 512 |
| Ama87I | CYCGRG | 1 cut(s) | 352 |
| AoxI | GGCC | 3 cut(s) | 412, 464, 611 |
| ApeKI | GCWGC | 1 cut(s) | 108 |
| ApoI | RAATTY | 1 cut(s) | 322 |
| AsiGI | ACCGGT | 1 cut(s) | 299 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 569 |
| AspLEI | GCGC | 1 cut(s) | 497 |
| AspS9I | GGNCC | 4 cut(s) | 230, 434, 464, 657 |
| AsuC2I | CCSGG | 2 cut(s) | 416, 524 |
| AsuHPI | GGTGA | 3 cut(s) | 31, 286, 437 |
| AsuII | TTCGAA | 1 cut(s) | 281 |
| AvaI | CYCGRG | 1 cut(s) | 352 |
| AvaII | GGWCC | 3 cut(s) | 230, 434, 657 |
| BbvI | GCAGC | 1 cut(s) | 95 |
| BccI | CCATC | 2 cut(s) | 175, 400 |
| BceAI | ACGGC | 1 cut(s) | 39 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 629, 663 |
| BciT130I | CCWGG | 2 cut(s) | 228, 537 |
| BciVI | GTATCC | 1 cut(s) | 601 |
| BcnI | CCSGG | 2 cut(s) | 416, 524 |
| BcoDI | GTCTC | 3 cut(s) | 168, 422, 512 |
| BfaI | CTAG | 3 cut(s) | 122, 186, 264 |
| BfoI | RGCGCY | 1 cut(s) | 498 |
| BfuAI | ACCTGC | 1 cut(s) | 655 |
| BfuI | GTATCC | 1 cut(s) | 601 |
| BglII | AGATCT | 1 cut(s) | 73 |
| BisI | GCNGC | 1 cut(s) | 109 |
| BlsI | GCNGC | 1 cut(s) | 110 |
| Bme1390I | CCNGG | 4 cut(s) | 228, 416, 524, 537 |
| Bme18I | GGWCC | 3 cut(s) | 230, 434, 657 |
| BmeT110I | CYCGRG | 1 cut(s) | 352 |
| BmgT120I | GGNCC | 4 cut(s) | 230, 434, 464, 657 |
| BmiI | GGNNCC | 1 cut(s) | 502 |
| BmrFI | CCNGG | 4 cut(s) | 228, 416, 524, 537 |
| BmsI | GCATC | 2 cut(s) | 381, 606 |
| BoxI | GACNNNNGTC | 1 cut(s) | 66 |
| BpmI | CTGGAG | 2 cut(s) | 604, 641 |
| Bpu14I | TTCGAA | 1 cut(s) | 281 |
| BpuMI | CCSGG | 2 cut(s) | 416, 524 |
| Bsa29I | ATCGAT | 1 cut(s) | 375 |
| BsaI | GGTCTC | 1 cut(s) | 512 |
| BsaJI | CCNNGG | 3 cut(s) | 15, 522, 660 |
| BsaWI | WCCGGW | 1 cut(s) | 299 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 421, 451 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 77, 421, 446, 447, 650 |
| Bse118I | RCCGGY | 2 cut(s) | 299, 650 |
| Bse1I | ACTGG | 3 cut(s) | 345, 436, 587 |
| Bse3DI | GCAATG | 4 cut(s) | 95, 118, 306, 684 |
| BseBI | CCWGG | 2 cut(s) | 228, 537 |
| BseCI | ATCGAT | 1 cut(s) | 375 |
| BseDI | CCNNGG | 3 cut(s) | 15, 522, 660 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 77, 421, 446, 447, 650 |
| BseMI | GCAATG | 4 cut(s) | 95, 118, 306, 684 |
| BseNI | ACTGG | 3 cut(s) | 345, 436, 587 |
| BseXI | GCAGC | 1 cut(s) | 95 |
| Bsh1236I | CGCG | 1 cut(s) | 662 |
| BshFI | GGCC | 3 cut(s) | 414, 466, 613 |
| BshTI | ACCGGT | 1 cut(s) | 299 |
| BshVI | ATCGAT | 1 cut(s) | 375 |
| BsiHKCI | CYCGRG | 1 cut(s) | 352 |
| BsiSI | CCGG | 4 cut(s) | 300, 415, 524, 651 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 77, 421, 446, 447, 650 |
| BsmAI | GTCTC | 3 cut(s) | 168, 422, 512 |
| BsnI | GGCC | 3 cut(s) | 414, 466, 613 |
| Bso31I | GGTCTC | 1 cut(s) | 512 |
| BsoBI | CYCGRG | 1 cut(s) | 352 |
| Bsp119I | TTCGAA | 1 cut(s) | 281 |
| Bsp1407I | TGTACA | 1 cut(s) | 41 |
| Bsp143I | GATC | 1 cut(s) | 73 |
| BspACI | CCGC | 6 cut(s) | 394, 441, 504, 660, 662, 689 |
| BspANI | GGCC | 3 cut(s) | 414, 466, 613 |
| BspDI | ATCGAT | 1 cut(s) | 375 |
| BspFNI | CGCG | 1 cut(s) | 662 |
| BspLI | GGNNCC | 1 cut(s) | 502 |
| BspMI | ACCTGC | 1 cut(s) | 655 |
| BspT104I | TTCGAA | 1 cut(s) | 281 |
| BspTNI | GGTCTC | 1 cut(s) | 512 |
| BsrDI | GCAATG | 4 cut(s) | 95, 118, 306, 684 |
| BsrFI | RCCGGY | 2 cut(s) | 299, 650 |
| BsrGI | TGTACA | 1 cut(s) | 41 |
| BsrI | ACTGG | 3 cut(s) | 345, 436, 587 |
| BssAI | RCCGGY | 2 cut(s) | 299, 650 |
| BssECI | CCNNGG | 3 cut(s) | 15, 522, 660 |
| BssMI | GATC | 1 cut(s) | 73 |
| BssT1I | CCWWGG | 1 cut(s) | 15 |
| Bst2UI | CCWGG | 2 cut(s) | 228, 537 |
| Bst6I | CTCTTC | 1 cut(s) | 414 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 485 |
| BstAUI | TGTACA | 1 cut(s) | 41 |
| BstBI | TTCGAA | 1 cut(s) | 281 |
| BstC8I | GCNNGC | 4 cut(s) | 28, 331, 412, 637 |
| BstDSI | CCRYGG | 1 cut(s) | 660 |
| BstFNI | CGCG | 1 cut(s) | 662 |
| BstH2I | RGCGCY | 1 cut(s) | 498 |
| BstHHI | GCGC | 1 cut(s) | 497 |
| BstKTI | GATC | 1 cut(s) | 76 |
| BstMAI | GTCTC | 3 cut(s) | 168, 422, 512 |
| BstMBI | GATC | 1 cut(s) | 73 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 400, 449, 485, 494, 503 |
| BstNI | CCWGG | 2 cut(s) | 228, 537 |
| BstNSI | RCATGY | 2 cut(s) | 69, 89 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 66 |
| BstSCI | CCNGG | 4 cut(s) | 226, 414, 522, 535 |
| BstUI | CGCG | 1 cut(s) | 662 |
| BstV1I | GCAGC | 1 cut(s) | 95 |
| BstX2I | RGATCY | 1 cut(s) | 73 |
| BstYI | RGATCY | 1 cut(s) | 73 |
| Bsu15I | ATCGAT | 1 cut(s) | 375 |
| BsuI | GTATCC | 1 cut(s) | 601 |
| BsuRI | GGCC | 3 cut(s) | 414, 466, 613 |
| BsuTUI | ATCGAT | 1 cut(s) | 375 |
| BtgI | CCRYGG | 1 cut(s) | 660 |
| BveI | ACCTGC | 1 cut(s) | 655 |
| Cac8I | GCNNGC | 4 cut(s) | 28, 331, 412, 637 |
| CfoI | GCGC | 1 cut(s) | 497 |
| Cfr10I | RCCGGY | 2 cut(s) | 299, 650 |
| Cfr13I | GGNCC | 4 cut(s) | 230, 434, 464, 657 |
| Cfr42I | CCGCGG | 1 cut(s) | 663 |
| ClaI | ATCGAT | 1 cut(s) | 375 |
| Csp6I | GTAC | 1 cut(s) | 42 |
| CspAI | ACCGGT | 1 cut(s) | 299 |
| CviAII | CATG | 4 cut(s) | 66, 86, 217, 547 |
| CviJI | RGCY | 9 cut(s) | 26, 226, 329, 362, 410, 414, 452, 466, 613 |
| CviKI_1 | RGCY | 9 cut(s) | 26, 226, 329, 362, 410, 414, 452, 466, 613 |
| CviQI | GTAC | 1 cut(s) | 42 |
| DpnI | GATC | 1 cut(s) | 75 |
| DpnII | GATC | 1 cut(s) | 73 |
| EaeI | YGGCCR | 1 cut(s) | 412 |
| Eam1104I | CTCTTC | 1 cut(s) | 414 |
| EarI | CTCTTC | 1 cut(s) | 414 |
| EciI | GGCGGA | 1 cut(s) | 493 |
| Eco130I | CCWWGG | 1 cut(s) | 15 |
| Eco31I | GGTCTC | 1 cut(s) | 512 |
| Eco47I | GGWCC | 3 cut(s) | 230, 434, 657 |
| Eco88I | CYCGRG | 1 cut(s) | 352 |
| EcoRII | CCWGG | 2 cut(s) | 226, 535 |
| EcoT14I | CCWWGG | 1 cut(s) | 15 |
| ErhI | CCWWGG | 1 cut(s) | 15 |
| FaeI | CATG | 4 cut(s) | 69, 89, 220, 550 |
| FaiI | YATR | 9 cut(s) | 67, 87, 138, 156, 176, 218, 548, 669, 671 |
| FatI | CATG | 4 cut(s) | 65, 85, 216, 546 |
| FauI | CCCGC | 3 cut(s) | 387, 448, 682 |
| Fnu4HI | GCNGC | 1 cut(s) | 109 |
| Fsp4HI | GCNGC | 1 cut(s) | 109 |
| FspBI | CTAG | 3 cut(s) | 122, 186, 264 |
| GlaI | GCGC | 1 cut(s) | 496 |
| GluI | GCNGC | 1 cut(s) | 109 |
| GsuI | CTGGAG | 2 cut(s) | 604, 641 |
| HaeII | RGCGCY | 1 cut(s) | 498 |
| HaeIII | GGCC | 3 cut(s) | 414, 466, 613 |
| HapII | CCGG | 4 cut(s) | 300, 415, 524, 651 |
| HhaI | GCGC | 1 cut(s) | 497 |
| Hin1II | CATG | 4 cut(s) | 69, 89, 220, 550 |
| Hin6I | GCGC | 1 cut(s) | 495 |
| HinP1I | GCGC | 1 cut(s) | 495 |
| HincII | GTYRAC | 2 cut(s) | 53, 529 |
| HindII | GTYRAC | 2 cut(s) | 53, 529 |
| HinfI | GANTC | 2 cut(s) | 314, 385 |
| HpaII | CCGG | 4 cut(s) | 300, 415, 524, 651 |
| HphI | GGTGA | 3 cut(s) | 31, 286, 437 |
| Hpy166II | GTNNAC | 4 cut(s) | 42, 53, 529, 580 |
| Hpy188I | TCNGA | 2 cut(s) | 321, 514 |
| Hpy188III | TCNNGA | 2 cut(s) | 71, 352 |
| Hpy8I | GTNNAC | 4 cut(s) | 42, 53, 529, 580 |
| HpyAV | CCTTC | 1 cut(s) | 477 |
| HpyCH4V | TGCA | 2 cut(s) | 111, 403 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 400, 449, 485, 494, 503 |
| Hsp92II | CATG | 4 cut(s) | 69, 89, 220, 550 |
| HspAI | GCGC | 1 cut(s) | 495 |
| KspI | CCGCGG | 1 cut(s) | 663 |
| Kzo9I | GATC | 1 cut(s) | 73 |
| Lsp1109I | GCAGC | 1 cut(s) | 95 |
| LweI | GCATC | 2 cut(s) | 381, 606 |
| MaeI | CTAG | 3 cut(s) | 122, 186, 264 |
| MaeIII | GTNAC | 3 cut(s) | 10, 19, 266 |
| MalI | GATC | 1 cut(s) | 75 |
| MboI | GATC | 1 cut(s) | 73 |
| MboII | GAAGA | 1 cut(s) | 431 |
| MflI | RGATCY | 1 cut(s) | 73 |
| MluCI | AATT | 6 cut(s) | 103, 284, 322, 555, 629, 679 |
| MmeI | TCCRAC | 1 cut(s) | 635 |
| MnlI | CCTC | 9 cut(s) | 190, 243, 265, 352, 415, 447, 543, 603, 616 |
| MroXI | GAANNNNTTC | 1 cut(s) | 569 |
| MspA1I | CMGCKG | 2 cut(s) | 443, 662 |
| MspI | CCGG | 4 cut(s) | 300, 415, 524, 651 |
| MspR9I | CCNGG | 4 cut(s) | 228, 416, 524, 537 |
| MvaI | CCWGG | 2 cut(s) | 228, 537 |
| MvnI | CGCG | 1 cut(s) | 662 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 400, 449, 485, 494, 503 |
| NciI | CCSGG | 2 cut(s) | 416, 524 |
| NdeII | GATC | 1 cut(s) | 73 |
| NlaIII | CATG | 4 cut(s) | 69, 89, 220, 550 |
| NlaIV | GGNNCC | 1 cut(s) | 502 |
| NmuCI | GTSAC | 2 cut(s) | 19, 266 |
| NspI | RCATGY | 2 cut(s) | 69, 89 |
| NspV | TTCGAA | 1 cut(s) | 281 |
| PaeR7I | CTCGAG | 1 cut(s) | 352 |
| PaqCI | CACCTGC | 1 cut(s) | 655 |
| PciI | ACATGT | 2 cut(s) | 65, 85 |
| PdmI | GAANNNNTTC | 1 cut(s) | 569 |
| PfeI | GAWTC | 2 cut(s) | 314, 385 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 77 |
| PinAI | ACCGGT | 1 cut(s) | 299 |
| PkrI | GCNGC | 1 cut(s) | 110 |
| PscI | ACATGT | 2 cut(s) | 65, 85 |
| PshAI | GACNNNNGTC | 1 cut(s) | 66 |
| Psp6I | CCWGG | 2 cut(s) | 226, 535 |
| PspGI | CCWGG | 2 cut(s) | 226, 535 |
| PspN4I | GGNNCC | 1 cut(s) | 502 |
| PspPI | GGNCC | 4 cut(s) | 230, 434, 464, 657 |
| PsuI | RGATCY | 1 cut(s) | 73 |
| RsaI | GTAC | 1 cut(s) | 43 |
| RsaNI | GTAC | 1 cut(s) | 42 |
| SacII | CCGCGG | 1 cut(s) | 663 |
| SatI | GCNGC | 1 cut(s) | 109 |
| Sau3AI | GATC | 1 cut(s) | 73 |
| Sau96I | GGNCC | 4 cut(s) | 230, 434, 464, 657 |
| ScrFI | CCNGG | 4 cut(s) | 228, 416, 524, 537 |
| SetI | ASST | 6 cut(s) | 21, 276, 439, 463, 487, 649 |
| SfaNI | GCATC | 2 cut(s) | 381, 606 |
| Sfr274I | CTCGAG | 1 cut(s) | 352 |
| Sfr303I | CCGCGG | 1 cut(s) | 663 |
| SfuI | TTCGAA | 1 cut(s) | 281 |
| SgrBI | CCGCGG | 1 cut(s) | 663 |
| SinI | GGWCC | 3 cut(s) | 230, 434, 657 |
| SlaI | CTCGAG | 1 cut(s) | 352 |
| SmlI | CTYRAG | 1 cut(s) | 352 |
| SmoI | CTYRAG | 1 cut(s) | 352 |
| Sse9I | AATT | 6 cut(s) | 103, 284, 322, 555, 629, 679 |
| SsiI | CCGC | 6 cut(s) | 394, 441, 504, 660, 662, 689 |
| SspMI | CTAG | 3 cut(s) | 122, 186, 264 |
| StyD4I | CCNGG | 4 cut(s) | 226, 414, 522, 535 |
| StyI | CCWWGG | 1 cut(s) | 15 |
| TaqI | TCGA | 3 cut(s) | 281, 353, 375 |
| TasI | AATT | 6 cut(s) | 103, 284, 322, 555, 629, 679 |
| TatI | WGTACW | 1 cut(s) | 41 |
| TfiI | GAWTC | 2 cut(s) | 314, 385 |
| TseFI | GTSAC | 2 cut(s) | 19, 266 |
| TseI | GCWGC | 1 cut(s) | 108 |
| Tsp45I | GTSAC | 2 cut(s) | 19, 266 |
| TspDTI | ATGAA | 1 cut(s) | 84 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 77 |
| VpaK11BI | GGWCC | 3 cut(s) | 230, 434, 657 |
| XapI | RAATTY | 1 cut(s) | 322 |
| XceI | RCATGY | 2 cut(s) | 69, 89 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 651 |
| XhoI | CTCGAG | 1 cut(s) | 352 |
| XmnI | GAANNNNTTC | 1 cut(s) | 569 |
| XspI | CTAG | 3 cut(s) | 122, 186, 264 |