Rmu_sc0009255.1_g000007

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009255.1
OG0000087
Physical Location & Seq
Reverse (-)
19015 .. 22127
3113 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009255.1_g000007.1.cds

Sequence Viewer

Length: 1935 bp
atgtgggacaaaggttcttctgatgtcatatcagccattttgttgtgtatagatgggctgtgctggccttgccccgggccctgggtgcccggggtagcatctcatgtgaggcccgccatggtgggtcgtgaacccggcccatggcgtggtacttgggagtaccgatggggctcagccgctagtgctaaaattagtaagccacctactctctgggacaagatgagggttgaatccctggtactggatggggtggagagaggacctgggtctgatacccgatggggtagaaaatttgagcctccggtacccaatggggtagagagagggcttggctctgatacccgatgggatatagcgagatttgaggtccccggtaccgtagttaggatggaatcagaagccaggggtggggatacgggatcgtcgtaccagtcttctgccaggcaagctgaagtggatatcgatcggtacttaggtcgagtagatcaattagcagagaacacgggatcctcaactggggtgttctcggagagcagtgaggagtccgacgagggtgagagcgagggtggatctgcggaggccccggtagtcacggtggcaattaccgagggcataccgaagcctaggtatgcacttgcggacgggaccggatggagagcttaccgcgaatcctgccccggggtgggtggcgctgcacgagaatcagttccaccaagggttatcgttatcgctgacccggtgcctacagtatctgttgcggatgctgaacctgtcatcggggcagttgaccctgaatgccattcatcaaatatacaggtcctgtactcaaggaagttgtcttgtgcgggtacagttacgtttgccgctagggattacgaaccactagttaccgacatgccttcctcgatgagcaaaaggtggaggaacaaagtattcctagctggggggcggtggcaaattaaaaataagaagtggcagctgaccggtaccttccaagctatcggggaccagtcctatactctatctgaagtcgaaaggaagaggatagctcgggtatatgccgtttggtcagagaaagataggagctcttatagattcatccggcactctatactttataggctagggctagggtggctccccgtgaaagcaccgaagaggaaaccccggaaaggcaaagaggaagacagaatggatgatgctcagttgatggatatgctgatgggccagggggaagacgcccttcacatcgatgtcgacctagggtcgaaaggtacgagtcgttccgttgaagagaccctactggagatcaccgatgagggatatggggaacctgatcctgacgctcccgtgacccaagtcgtgcagccctctgttgccgatgtcatcacgatagatgatatcggggcggggaaggtaccggtccccgtgtctatttcctctcgctccactgggagcgatgaggcattgctgcctggtgagaagaaaagatcccataggcaccggcatcaaagtgataaggaggaggtgacgtatactggcggggatgttcagggtttcggttcgaagagacagaagaaagatcacccgggaccagagtcgtcgccttcgcttggcttattgtctcctgcccttctggtgatccccaagaagcccatcaagcagttgttgagtgagtacggggtggccgatgaaaagttcgtgcggtccatgcttggtgacctgaaggacattgacctcgaccgggtgcgggccaaggacaatacgccccaagagaatcgccgtcttgcccgggaatccatgatgcgggcactcttcaatgtgtacgcgattgacgccagcgaggaagatactcatctgaaggaggaggttagcaatctctctgggcaggtgaagtatctccatggcgagaaggccaagctggagaaggagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

644

Amino Acids

70.75

Weight (kDa)

5.72

Isoelectric Point (pI)

47.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000087)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28970 FvH4_2g03432 FvH4_2g17701 FvH4_4g10000 FvH4_4g15481 FvH4_4g15603 FvH4_6g16061 FvH4_6g25501
rosa_chinensis RchiOBHm_Chr2g0137471 RchiOBHm_Chr5g0054331
rosa_laevigata RLG00000019477 RLG00000022653 RLG00000029242
rosa_multiflora Rmu_co8012786.1_g000001 Rmu_co8165502.1_g000001 Rmu_co8383963.1_g000001 Rmu_co8428657.1_g000002 Rmu_co8441559.1_g000002 Rmu_co8493267.1_g000002 Rmu_co8512765.1_g000001 Rmu_co8522487.1_g000001 Rmu_sc0000045.1_g000034 Rmu_sc0000077.1_g000002 Rmu_sc0000177.1_g000003 Rmu_sc0000194.1_g000003 Rmu_sc0000239.1_g000073 Rmu_sc0000265.1_g000006 Rmu_sc0000271.1_g000031 Rmu_sc0000276.1_g000021 Rmu_sc0000279.1_g000008 Rmu_sc0000280.1_g000017 Rmu_sc0000315.1_g000047 Rmu_sc0000381.1_g000029 Rmu_sc0000423.1_g000013 Rmu_sc0000455.1_g000020 Rmu_sc0000596.1_g000032 Rmu_sc0000605.1_g000020 Rmu_sc0000643.1_g000006 Rmu_sc0000676.1_g000028 Rmu_sc0000698.1_g000063 Rmu_sc0000698.1_g000064 Rmu_sc0000706.1_g000030 Rmu_sc0000744.1_g000078 Rmu_sc0000744.1_g000098 Rmu_sc0000779.1_g000016 Rmu_sc0000808.1_g000006 Rmu_sc0000830.1_g000044 Rmu_sc0000842.1_g000021 Rmu_sc0000883.1_g000019 Rmu_sc0000904.1_g000013 Rmu_sc0000924.1_g000001 Rmu_sc0000959.1_g000012 Rmu_sc0001045.1_g000005 Rmu_sc0001069.1_g000021 Rmu_sc0001107.1_g000001 Rmu_sc0001155.1_g000006 Rmu_sc0001244.1_g000023 Rmu_sc0001302.1_g000017 Rmu_sc0001382.1_g000007 Rmu_sc0001393.1_g000026 Rmu_sc0001436.1_g000015 Rmu_sc0001464.1_g000021 Rmu_sc0001477.1_g000001 Rmu_sc0001483.1_g000024 Rmu_sc0001483.1_g000026 Rmu_sc0001499.1_g000020 Rmu_sc0001518.1_g000001 Rmu_sc0001520.1_g000003 Rmu_sc0001522.1_g000020 Rmu_sc0001529.1_g000008 Rmu_sc0001554.1_g000016 Rmu_sc0001563.1_g000018 Rmu_sc0001565.1_g000024 Rmu_sc0001578.1_g000014 Rmu_sc0001611.1_g000003 Rmu_sc0001700.1_g000026 Rmu_sc0001849.1_g000075 Rmu_sc0001866.1_g000011 Rmu_sc0001898.1_g000013 Rmu_sc0002029.1_g000007 Rmu_sc0002082.1_g000055 Rmu_sc0002206.1_g000032 Rmu_sc0002253.1_g000031 Rmu_sc0002264.1_g000020 Rmu_sc0002414.1_g000024 Rmu_sc0002451.1_g000063 Rmu_sc0002490.1_g000015 Rmu_sc0002539.1_g000010 Rmu_sc0002545.1_g000060 Rmu_sc0002564.1_g000020 Rmu_sc0002584.1_g000062 Rmu_sc0002669.1_g000034 Rmu_sc0002669.1_g000035 Rmu_sc0002690.1_g000010 Rmu_sc0002764.1_g000070 Rmu_sc0002786.1_g000006 Rmu_sc0002804.1_g000013 Rmu_sc0002868.1_g000015 Rmu_sc0002868.1_g000055 Rmu_sc0002889.1_g000039 Rmu_sc0002892.1_g000070 Rmu_sc0002926.1_g000001 Rmu_sc0002986.1_g000063 Rmu_sc0003032.1_g000023 Rmu_sc0003033.1_g000059 Rmu_sc0003063.1_g000022 Rmu_sc0003079.1_g000001 Rmu_sc0003092.1_g000012 Rmu_sc0003244.1_g000013 Rmu_sc0003276.1_g000004 Rmu_sc0003328.1_g000003 Rmu_sc0003352.1_g000034 Rmu_sc0003352.1_g000035 Rmu_sc0003419.1_g000038 Rmu_sc0003551.1_g000015 Rmu_sc0003669.1_g000036 Rmu_sc0003760.1_g000029 Rmu_sc0003781.1_g000021 Rmu_sc0003865.1_g000002 Rmu_sc0004012.1_g000010 Rmu_sc0004140.1_g000028 Rmu_sc0004152.1_g000002 Rmu_sc0004303.1_g000009 Rmu_sc0004336.1_g000039 Rmu_sc0004365.1_g000012 Rmu_sc0004365.1_g000013 Rmu_sc0004379.1_g000010 Rmu_sc0004529.1_g000017 Rmu_sc0004529.1_g000018 Rmu_sc0004536.1_g000025 Rmu_sc0004574.1_g000019 Rmu_sc0004602.1_g000042 Rmu_sc0004836.1_g000018 Rmu_sc0004841.1_g000037 Rmu_sc0004903.1_g000006 Rmu_sc0004977.1_g000006 Rmu_sc0005137.1_g000025 Rmu_sc0005292.1_g000031 Rmu_sc0005292.1_g000032 Rmu_sc0005353.1_g000014 Rmu_sc0005406.1_g000005 Rmu_sc0005469.1_g000016 Rmu_sc0005506.1_g000003 Rmu_sc0005507.1_g000003 Rmu_sc0005629.1_g000006 Rmu_sc0005664.1_g000033 Rmu_sc0005665.1_g000042 Rmu_sc0005685.1_g000003 Rmu_sc0006375.1_g000004 Rmu_sc0006444.1_g000020 Rmu_sc0006453.1_g000012 Rmu_sc0006676.1_g000013 Rmu_sc0006934.1_g000001 Rmu_sc0006945.1_g000001 Rmu_sc0006945.1_g000006 Rmu_sc0006954.1_g000015 Rmu_sc0007102.1_g000012 Rmu_sc0007144.1_g000007 Rmu_sc0007144.1_g000008 Rmu_sc0007230.1_g000003 Rmu_sc0007415.1_g000040 Rmu_sc0007729.1_g000001 Rmu_sc0007920.1_g000017 Rmu_sc0008058.1_g000023 Rmu_sc0008199.1_g000008 Rmu_sc0008232.1_g000010 Rmu_sc0008232.1_g000011 Rmu_sc0008336.1_g000011 Rmu_sc0008581.1_g000007 Rmu_sc0008623.1_g000002 Rmu_sc0009255.1_g000007 Rmu_sc0009479.1_g000008 Rmu_sc0009483.1_g000001 Rmu_sc0009641.1_g000001 Rmu_sc0009660.1_g000003 Rmu_sc0009978.1_g000010 Rmu_sc0010048.1_g000009 Rmu_sc0010547.1_g000007 Rmu_sc0010988.1_g000006 Rmu_sc0011148.1_g000003 Rmu_sc0011203.1_g000010 Rmu_sc0011375.1_g000004 Rmu_sc0011375.1_g000005 Rmu_sc0011559.1_g000005 Rmu_sc0012199.1_g000001 Rmu_sc0013224.1_g000005 Rmu_sc0013931.1_g000004 Rmu_sc0013931.1_g000005 Rmu_sc0013985.1_g000006 Rmu_sc0014406.1_g000001 Rmu_sc0014463.1_g000002 Rmu_sc0016218.1_g000005 Rmu_sc0019345.1_g000002 Rmu_sc0019655.1_g000001 Rmu_sc0020833.1_g000001 Rmu_sc0024204.1_g000001 Rmu_sc0024309.1_g000001 Rmu_sc0027177.1_g000002 Rmu_sc0027778.1_g000002 Rmu_sc0028215.1_g000001 Rmu_sc0029924.1_g000001 Rmu_sc0032552.1_g000001 Rmu_sc0036156.1_g000001 Rmu_sc0037073.1_g000001 Rmu_sc0040495.1_g000001 Rmu_ssc0000255.1_g000056 Rmu_ssc0000309.1_g000006 Rmu_ssc0000312.1_g000005 Rmu_ssc0000371.1_g000021 Rmu_ssc0000372.1_g000010 Rmu_ssc0000372.1_g000011 Rmu_ssc0000372.1_g000069 Rmu_ssc0000386.1_g000005 Rmu_ssc0000386.1_g000006 Rmu_ssc0000443.1_g000032
rosa_roxburghii Rroxscaffold_154G00447940 Rroxscaffold_1G00009660 Rroxscaffold_1G00016990 Rroxscaffold_1G00021370 Rroxscaffold_1G00037860 Rroxscaffold_2G00101680 Rroxscaffold_2G00101690 Rroxscaffold_2G00122690 Rroxscaffold_2G00122700 Rroxscaffold_2G00123340 Rroxscaffold_2G00123350 Rroxscaffold_2G00125480 Rroxscaffold_2G00136130 Rroxscaffold_2G00146590 Rroxscaffold_3G00218350 Rroxscaffold_3G00218360 Rroxscaffold_3G00218370 Rroxscaffold_3G00218380 Rroxscaffold_3G00232530 Rroxscaffold_3G00262600 Rroxscaffold_3G00263070 Rroxscaffold_4G00289030 Rroxscaffold_4G00296530 Rroxscaffold_4G00306140 Rroxscaffold_4G00306150 Rroxscaffold_4G00306380 Rroxscaffold_4G00306390 Rroxscaffold_4G00306400 Rroxscaffold_4G00309560 Rroxscaffold_4G00316600 Rroxscaffold_4G00322820 Rroxscaffold_4G00322830 Rroxscaffold_4G00324370 Rroxscaffold_4G00332350 Rroxscaffold_5G00346450 Rroxscaffold_5G00352960 Rroxscaffold_5G00352970 Rroxscaffold_5G00360310 Rroxscaffold_5G00373670 Rroxscaffold_5G00378610 Rroxscaffold_5G00378940 Rroxscaffold_6G00388240 Rroxscaffold_6G00389010 Rroxscaffold_6G00389030 Rroxscaffold_6G00399900 Rroxscaffold_6G00399910 Rroxscaffold_6G00400260 Rroxscaffold_6G00400270 Rroxscaffold_6G00400280 Rroxscaffold_7G00164100 Rroxscaffold_7G00176300 Rroxscaffold_7G00176310 Rroxscaffold_7G00177210 Rroxscaffold_7G00204300 Rroxscaffold_7G00204310 Rroxscaffold_7G00204320
rosa_rugosa Rorug06G0076500
rosa_samantha Rh1AG108400 Rh2AG377100 Rh2AG377200 Rh2BG383500 Rh2CG362800 Rh2DG399900 Rh2DG439600 Rh2DG672800 Rh6DG186300 Rh7AG351400 Rh7BG368500 Rh7CG368800 Rh7CG411100 Rh7DG424400
rosa_wichuraiana Rw1G021100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1879
Acc36I ACCTGC 1 cut(s) 1879
Acc65I GGTACC 4 cut(s) 304, 374, 986, 1417
AccB1I GGYRCC 7 cut(s) 85, 304, 374, 739, 986, 1417, 1500
AccB7I CCANNNNNTGG 1 cut(s) 146
AccI GTMKAC 2 cut(s) 1257, 1535
AccII CGCG 2 cut(s) 666, 1829
AclWI GGATC 7 cut(s) 427, 501, 514, 577, 1331, 1485, 1636
AcoI YGGCCR 1 cut(s) 1686
AcsI RAATTY 1 cut(s) 290
AcuI CTGAAG 4 cut(s) 471, 1047, 1745, 1880
AcyI GRCGYC 2 cut(s) 1239, 1836
AgeI ACCGGT 2 cut(s) 983, 1420
AgsI TTSAA 3 cut(s) 230, 1292, 1819
AhdI GACNNNNNGTC 1 cut(s) 1264
AhlI ACTAGT 1 cut(s) 883
AjnI CCWGG 7 cut(s) 80, 234, 262, 401, 440, 1227, 1474
AloI GAACNNNNNNTCC 2 cut(s) 491, 523
AluBI AGCT 8 cut(s) 449, 659, 941, 979, 998, 1049, 1086, 1921
AluI AGCT 8 cut(s) 449, 659, 941, 979, 998, 1049, 1086, 1921
Alw21I GWGCWC 1 cut(s) 1088
Alw26I GTCTC 3 cut(s) 1289, 1564, 1629
AlwI GGATC 7 cut(s) 427, 501, 514, 577, 1331, 1485, 1636
AlwNI CAGNNNCTG 2 cut(s) 752, 820
Ama87I CYCGRG 6 cut(s) 74, 89, 677, 1050, 1588, 1791
AoxI GGCC 9 cut(s) 65, 77, 110, 136, 579, 1225, 1686, 1752, 1914
ApaI GGGCCC 1 cut(s) 81
ApeKI GCWGC 4 cut(s) 692, 976, 1366, 1471
ApoI RAATTY 1 cut(s) 290
AsiGI ACCGGT 2 cut(s) 983, 1420
Asp700I GAANNNNTTC 1 cut(s) 705
Asp718I GGTACC 4 cut(s) 304, 374, 986, 1417
AspA2I CCTAGG 2 cut(s) 623, 1261
AspLEI GCGC 1 cut(s) 692
AsuHPI GGTGA 8 cut(s) 566, 1303, 1490, 1540, 1577, 1651, 1730, 1903
AsuII TTCGAA 1 cut(s) 1565
AvaI CYCGRG 6 cut(s) 74, 89, 677, 1050, 1588, 1791
AvaII GGWCC 8 cut(s) 260, 367, 645, 817, 1006, 1423, 1592, 1707
AvrII CCTAGG 2 cut(s) 623, 1261
BaeGI GKGCMC 3 cut(s) 81, 90, 1813
BaeI ACNNNNGTAYC 4 cut(s) 366, 399, 460, 493
BamHI GGATCC 1 cut(s) 506
BanI GGYRCC 7 cut(s) 85, 304, 374, 739, 986, 1417, 1500
BanII GRGCYC 3 cut(s) 81, 173, 1088
BarI GAAGNNNNNNTAC 2 cut(s) 1284, 1316
BauI CACGAG 1 cut(s) 696
BbsI GAAGAC 3 cut(s) 426, 1191, 1242
Bbv12I GWGCWC 1 cut(s) 1088
BbvI GCAGC 4 cut(s) 679, 988, 1378, 1458
BceAI ACGGC 2 cut(s) 1046, 1767
BciT130I CCWGG 7 cut(s) 82, 236, 264, 403, 442, 1229, 1476
BciVI GTATCC 1 cut(s) 406
BcoDI GTCTC 3 cut(s) 1289, 1564, 1629
BcuI ACTAGT 1 cut(s) 883
BfaI CTAG 8 cut(s) 180, 624, 867, 884, 938, 1124, 1130, 1262
BfmI CTRYAG 1 cut(s) 744
BfoI RGCGCY 1 cut(s) 693
BfuAI ACCTGC 1 cut(s) 1879
BfuI GTATCC 1 cut(s) 406
BisI GCNGC 6 cut(s) 177, 693, 864, 977, 1367, 1472
BlnI CCTAGG 2 cut(s) 623, 1261
BlpI GCTNAGC 1 cut(s) 172
BlsI GCNGC 6 cut(s) 178, 694, 865, 978, 1368, 1473
Bme18I GGWCC 8 cut(s) 260, 367, 645, 817, 1006, 1423, 1592, 1707
BmeRI GACNNNNNGTC 1 cut(s) 1264
BmeT110I CYCGRG 6 cut(s) 74, 89, 677, 1050, 1588, 1791
BmrI ACTGGG 2 cut(s) 525, 1461
BmsI GCATC 5 cut(s) 107, 751, 1189, 1516, 1794
BmuI ACTGGG 2 cut(s) 525, 1461
BoxI GACNNNNGTC 3 cut(s) 265, 1358, 1597
BpiI GAAGAC 3 cut(s) 426, 1191, 1242
BplI GAGNNNNNCTC 2 cut(s) 1033, 1065
BpmI CTGGAG 1 cut(s) 1325
Bpu1102I GCTNAGC 1 cut(s) 172
Bpu14I TTCGAA 1 cut(s) 1565
BpuEI CTTGAG 1 cut(s) 811
Bsa29I ATCGAT 2 cut(s) 462, 1251
BsaBI GATNNNNATC 2 cut(s) 462, 1854
BsaHI GRCGYC 2 cut(s) 1239, 1836
BsaI GGTCTC 1 cut(s) 1289
BsaWI WCCGGW 4 cut(s) 301, 647, 983, 1420
BsaXI ACNNNNNCTCC 3 cut(s) 1517, 1547, 1916
Bse118I RCCGGY 3 cut(s) 983, 1420, 1503
Bse1I ACTGG 7 cut(s) 246, 430, 520, 1009, 1308, 1456, 1543
Bse3DI GCAATG 1 cut(s) 1466
Bse8I GATNNNNATC 2 cut(s) 462, 1854
BseBI CCWGG 7 cut(s) 82, 236, 264, 403, 442, 1229, 1476
BseCI ATCGAT 2 cut(s) 462, 1251
BseGI GGATG 7 cut(s) 250, 393, 656, 766, 1098, 1201, 1552
BseJI GATNNNNATC 2 cut(s) 462, 1854
BseMI GCAATG 1 cut(s) 1466
BseMII CTCAG 2 cut(s) 186, 1217
BseNI ACTGG 7 cut(s) 246, 430, 520, 1009, 1308, 1456, 1543
BseRI GAGGAG 3 cut(s) 554, 1538, 1880
BseSI GKGCMC 3 cut(s) 81, 90, 1813
BseXI GCAGC 4 cut(s) 679, 988, 1378, 1458
BseYI CCCAGC 1 cut(s) 941
BsgI GTGCAG 2 cut(s) 678, 1385
Bsh1236I CGCG 2 cut(s) 666, 1829
Bsh1285I CGRYCG 2 cut(s) 466, 1744
BshFI GGCC 9 cut(s) 67, 79, 112, 138, 581, 1227, 1688, 1754, 1916
BshNI GGYRCC 7 cut(s) 85, 304, 374, 739, 986, 1417, 1500
BshTI ACCGGT 2 cut(s) 983, 1420
BshVI ATCGAT 2 cut(s) 462, 1251
BsiEI CGRYCG 2 cut(s) 466, 1744
BsiHKAI GWGCWC 1 cut(s) 1088
BsiHKCI CYCGRG 6 cut(s) 74, 89, 677, 1050, 1588, 1791
BslFI GGGAC 7 cut(s) 20, 227, 353, 658, 1019, 1409, 1605
BsmAI GTCTC 3 cut(s) 1289, 1564, 1629
BsmFI GGGAC 7 cut(s) 20, 227, 353, 658, 1019, 1409, 1605
BsmI GAATGC 1 cut(s) 800
BsnI GGCC 9 cut(s) 67, 79, 112, 138, 581, 1227, 1688, 1754, 1916
Bso31I GGTCTC 1 cut(s) 1289
BsoBI CYCGRG 6 cut(s) 74, 89, 677, 1050, 1588, 1791
Bsp119I TTCGAA 1 cut(s) 1565
Bsp120I GGGCCC 1 cut(s) 77
Bsp1286I GDGCHC 5 cut(s) 81, 90, 173, 1088, 1813
Bsp1720I GCTNAGC 1 cut(s) 172
Bsp19I CCATGG 3 cut(s) 117, 140, 1903
BspANI GGCC 9 cut(s) 67, 79, 112, 138, 581, 1227, 1688, 1754, 1916
BspCNI CTCAG 2 cut(s) 185, 1216
BspDI ATCGAT 2 cut(s) 462, 1251
BspFNI CGCG 2 cut(s) 666, 1829
BspMI ACCTGC 1 cut(s) 1879
BspPI GGATC 7 cut(s) 427, 501, 514, 577, 1331, 1485, 1636
BspT104I TTCGAA 1 cut(s) 1565
BspT107I GGYRCC 7 cut(s) 85, 304, 374, 739, 986, 1417, 1500
BspTNI GGTCTC 1 cut(s) 1289
BsrDI GCAATG 1 cut(s) 1466
BsrFI RCCGGY 3 cut(s) 983, 1420, 1503
BsrI ACTGG 7 cut(s) 246, 430, 520, 1009, 1308, 1456, 1543
BssAI RCCGGY 3 cut(s) 983, 1420, 1503
BssNAI GTATAC 1 cut(s) 1536
BssNI GRCGYC 2 cut(s) 1239, 1836
BssSI CACGAG 1 cut(s) 696
BssT1I CCWWGG 7 cut(s) 117, 140, 623, 713, 1261, 1755, 1903
Bst1107I GTATAC 1 cut(s) 1536
Bst2BI CACGAG 1 cut(s) 696
Bst2UI CCWGG 7 cut(s) 82, 236, 264, 403, 442, 1229, 1476
Bst4CI ACNGT 4 cut(s) 379, 595, 748, 853
Bst6I CTCTTC 5 cut(s) 1034, 1151, 1287, 1562, 1820
BstACI GRCGYC 2 cut(s) 1239, 1836
BstBI TTCGAA 1 cut(s) 1565
BstC8I GCNNGC 6 cut(s) 65, 114, 447, 1752, 1809, 1840
BstDEI CTNAG 3 cut(s) 172, 472, 1203
BstDSI CCRYGG 3 cut(s) 117, 140, 1903
BstEII GGTNACC 1 cut(s) 1718
BstF5I GGATG 7 cut(s) 250, 393, 656, 766, 1098, 1201, 1552
BstFNI CGCG 2 cut(s) 666, 1829
BstH2I RGCGCY 1 cut(s) 693
BstHHI GCGC 1 cut(s) 692
BstMAI GTCTC 3 cut(s) 1289, 1564, 1629
BstMCI CGRYCG 2 cut(s) 466, 1744
BstNI CCWGG 7 cut(s) 82, 236, 264, 403, 442, 1229, 1476
BstNSI RCATGY 1 cut(s) 898
BstPAI GACNNNNGTC 3 cut(s) 265, 1358, 1597
BstPI GGTNACC 1 cut(s) 1718
BstSFI CTRYAG 1 cut(s) 744
BstSLI GKGCMC 3 cut(s) 81, 90, 1813
BstUI CGCG 2 cut(s) 666, 1829
BstV1I GCAGC 4 cut(s) 679, 988, 1378, 1458
BstV2I GAAGAC 3 cut(s) 426, 1191, 1242
BstX2I RGATCY 3 cut(s) 506, 569, 1490
BstYI RGATCY 3 cut(s) 506, 569, 1490
BstZ17I GTATAC 1 cut(s) 1536
Bsu15I ATCGAT 2 cut(s) 462, 1251
BsuI GTATCC 1 cut(s) 406
BsuRI GGCC 9 cut(s) 67, 79, 112, 138, 581, 1227, 1688, 1754, 1916
BsuTUI ATCGAT 2 cut(s) 462, 1251
BtgI CCRYGG 3 cut(s) 117, 140, 1903
BtgZI GCGATG 1 cut(s) 1473
BtsCI GGATG 7 cut(s) 250, 393, 656, 766, 1098, 1201, 1552
BtsI GCAGTG 1 cut(s) 541
BtsIMutI CAGTG 2 cut(s) 541, 1449
BveI ACCTGC 1 cut(s) 1879
Cac8I GCNNGC 6 cut(s) 65, 114, 447, 1752, 1809, 1840
CaiI CAGNNNCTG 2 cut(s) 752, 820
CfoI GCGC 1 cut(s) 692
Cfr10I RCCGGY 3 cut(s) 983, 1420, 1503
Cfr9I CCCGGG 5 cut(s) 74, 89, 677, 1588, 1791
ClaI ATCGAT 2 cut(s) 462, 1251
CseI GACGC 3 cut(s) 1247, 1352, 1844
CspAI ACCGGT 2 cut(s) 983, 1420
CviAII CATG 7 cut(s) 104, 118, 141, 895, 1711, 1801, 1904
DdeI CTNAG 3 cut(s) 172, 472, 1203
DriI GACNNNNNGTC 1 cut(s) 1264
EaeI YGGCCR 1 cut(s) 1686
Eam1104I CTCTTC 5 cut(s) 1034, 1151, 1287, 1562, 1820
Eam1105I GACNNNNNGTC 1 cut(s) 1264
EarI CTCTTC 5 cut(s) 1034, 1151, 1287, 1562, 1820
Ecl136II GAGCTC 1 cut(s) 1086
Eco130I CCWWGG 7 cut(s) 117, 140, 623, 713, 1261, 1755, 1903
Eco24I GRGCYC 3 cut(s) 81, 173, 1088
Eco31I GGTCTC 1 cut(s) 1289
Eco32I GATATC 2 cut(s) 460, 1402
Eco47I GGWCC 8 cut(s) 260, 367, 645, 817, 1006, 1423, 1592, 1707
Eco53kI GAGCTC 1 cut(s) 1086
Eco57I CTGAAG 4 cut(s) 471, 1047, 1745, 1880
Eco88I CYCGRG 6 cut(s) 74, 89, 677, 1050, 1588, 1791
Eco91I GGTNACC 1 cut(s) 1718
EcoICRI GAGCTC 1 cut(s) 1086
EcoO109I RGGNCCY 5 cut(s) 78, 260, 367, 580, 817
EcoO65I GGTNACC 1 cut(s) 1718
EcoRII CCWGG 7 cut(s) 80, 234, 262, 401, 440, 1227, 1474
EcoRV GATATC 2 cut(s) 460, 1402
EcoT14I CCWWGG 7 cut(s) 117, 140, 623, 713, 1261, 1755, 1903
EcoT38I GRGCYC 3 cut(s) 81, 173, 1088
ErhI CCWWGG 7 cut(s) 117, 140, 623, 713, 1261, 1755, 1903
FaeI CATG 7 cut(s) 107, 121, 144, 898, 1714, 1804, 1907
FalI AAGNNNNNCTT 2 cut(s) 1227, 1259
FaqI GGGAC 7 cut(s) 20, 227, 353, 658, 1019, 1409, 1605
FatI CATG 7 cut(s) 103, 117, 140, 894, 1710, 1800, 1903
FauI CCCGC 6 cut(s) 121, 838, 1402, 1535, 1743, 1800
FblI GTMKAC 2 cut(s) 1257, 1535
Fnu4HI GCNGC 6 cut(s) 177, 693, 864, 977, 1367, 1472
FokI GGATG 7 cut(s) 257, 400, 663, 773, 1085, 1208, 1559
FriOI GRGCYC 3 cut(s) 81, 173, 1088
Fsp4HI GCNGC 6 cut(s) 177, 693, 864, 977, 1367, 1472
FspBI CTAG 8 cut(s) 180, 624, 867, 884, 938, 1124, 1130, 1262
GlaI GCGC 1 cut(s) 691
GluI GCNGC 6 cut(s) 177, 693, 864, 977, 1367, 1472
GsaI CCCAGC 1 cut(s) 945
GsuI CTGGAG 1 cut(s) 1325
HaeII RGCGCY 1 cut(s) 693
HaeIII GGCC 9 cut(s) 67, 79, 112, 138, 581, 1227, 1688, 1754, 1916
HgaI GACGC 3 cut(s) 1247, 1352, 1844
HhaI GCGC 1 cut(s) 692
Hin1I GRCGYC 2 cut(s) 1239, 1836
Hin1II CATG 7 cut(s) 107, 121, 144, 898, 1714, 1804, 1907
Hin6I GCGC 1 cut(s) 690
HinP1I GCGC 1 cut(s) 690
HincII GTYRAC 2 cut(s) 787, 1258
HindII GTYRAC 2 cut(s) 787, 1258
HphI GGTGA 8 cut(s) 566, 1303, 1490, 1540, 1577, 1651, 1730, 1903
Hpy166II GTNNAC 5 cut(s) 131, 787, 1258, 1536, 1825
Hpy188I TCNGA 9 cut(s) 22, 271, 337, 397, 529, 547, 1027, 1072, 1860
Hpy188III TCNNGA 3 cut(s) 128, 1340, 1390
Hpy8I GTNNAC 5 cut(s) 131, 787, 1258, 1536, 1825
Hpy99I CGWCG 3 cut(s) 427, 551, 1606
HpyCH4III ACNGT 4 cut(s) 379, 595, 748, 853
HpyCH4IV ACGT 2 cut(s) 857, 1532
HpyCH4V TGCA 3 cut(s) 632, 695, 1366
HpyF3I CTNAG 3 cut(s) 172, 472, 1203
HpySE526I ACGT 2 cut(s) 857, 1532
Hsp92I GRCGYC 2 cut(s) 1239, 1836
Hsp92II CATG 7 cut(s) 107, 121, 144, 898, 1714, 1804, 1907
HspAI GCGC 1 cut(s) 690
KpnI GGTACC 4 cut(s) 308, 378, 990, 1421
LmnI GCTCC 5 cut(s) 1083, 1143, 1351, 1451, 1455
Lsp1109I GCAGC 4 cut(s) 679, 988, 1378, 1458
LweI GCATC 5 cut(s) 107, 751, 1189, 1516, 1794
MaeI CTAG 8 cut(s) 180, 624, 867, 884, 938, 1124, 1130, 1262
MaeII ACGT 2 cut(s) 857, 1532
MaeIII GTNAC 6 cut(s) 589, 853, 886, 1351, 1528, 1718
MflI RGATCY 3 cut(s) 506, 569, 1490
MhlI GDGCHC 5 cut(s) 81, 90, 173, 1088, 1813
MluCI AATT 5 cut(s) 189, 290, 488, 600, 957
MlyI GAGTC 3 cut(s) 551, 1288, 1607
MmeI TCCRAC 1 cut(s) 570
MroXI GAANNNNTTC 1 cut(s) 705
MseI TTAA 1 cut(s) 960
MslI CAYNNNNRTG 2 cut(s) 1251, 1512
MspA1I CMGCKG 1 cut(s) 979
Mva1269I GAATGC 1 cut(s) 800
MvaI CCWGG 7 cut(s) 82, 236, 264, 403, 442, 1229, 1476
MvnI CGCG 2 cut(s) 666, 1829
NcoI CCATGG 3 cut(s) 117, 140, 1903
NlaIII CATG 7 cut(s) 107, 121, 144, 898, 1714, 1804, 1907
NmuCI GTSAC 4 cut(s) 589, 1351, 1528, 1718
NspI RCATGY 1 cut(s) 898
NspV TTCGAA 1 cut(s) 1565
PaqCI CACCTGC 1 cut(s) 1879
PasI CCCWGGG 1 cut(s) 81
PcsI WCGNNNNNNNCGW 3 cut(s) 422, 1274, 1686
PctI GAATGC 1 cut(s) 800
PdmI GAANNNNTTC 1 cut(s) 705
PfeI GAWTC 7 cut(s) 230, 392, 668, 701, 1095, 1777, 1796
PflMI CCANNNNNTGG 1 cut(s) 146
PinAI ACCGGT 2 cut(s) 983, 1420
PkrI GCNGC 6 cut(s) 178, 694, 865, 978, 1368, 1473
Ple19I CGATCG 1 cut(s) 466
PleI GAGTC 3 cut(s) 550, 1287, 1606
PpsI GAGTC 3 cut(s) 550, 1287, 1606
PpuMI RGGWCCY 3 cut(s) 260, 367, 817
PshAI GACNNNNGTC 3 cut(s) 265, 1358, 1597
Psp124BI GAGCTC 1 cut(s) 1088
Psp5II RGGWCCY 3 cut(s) 260, 367, 817
Psp6I CCWGG 7 cut(s) 80, 234, 262, 401, 440, 1227, 1474
PspEI GGTNACC 1 cut(s) 1718
PspFI CCCAGC 1 cut(s) 941
PspGI CCWGG 7 cut(s) 80, 234, 262, 401, 440, 1227, 1474
PspOMI GGGCCC 1 cut(s) 77
PspPPI RGGWCCY 3 cut(s) 260, 367, 817
PsrI GAACNNNNNNTAC 2 cut(s) 1267, 1299
PstNI CAGNNNCTG 2 cut(s) 752, 820
PsuI RGATCY 3 cut(s) 506, 569, 1490
PvuI CGATCG 1 cut(s) 466
PvuII CAGCTG 1 cut(s) 979
RseI CAYNNNNRTG 2 cut(s) 1251, 1512
SacI GAGCTC 1 cut(s) 1088
SalI GTCGAC 1 cut(s) 1256
SaqAI TTAA 1 cut(s) 960
SatI GCNGC 6 cut(s) 177, 693, 864, 977, 1367, 1472
SchI GAGTC 3 cut(s) 551, 1288, 1607
SduI GDGCHC 5 cut(s) 81, 90, 173, 1088, 1813
SfaNI GCATC 5 cut(s) 107, 751, 1189, 1516, 1794
SfcI CTRYAG 1 cut(s) 744
SfuI TTCGAA 1 cut(s) 1565
SinI GGWCC 8 cut(s) 260, 367, 645, 817, 1006, 1423, 1592, 1707
SmaI CCCGGG 5 cut(s) 76, 91, 679, 1590, 1793
SmiMI CAYNNNNRTG 2 cut(s) 1251, 1512
SmlI CTYRAG 1 cut(s) 826
SmoI CTYRAG 1 cut(s) 826
SpeI ACTAGT 1 cut(s) 883
Sse9I AATT 5 cut(s) 189, 290, 488, 600, 957
SspMI CTAG 8 cut(s) 180, 624, 867, 884, 938, 1124, 1130, 1262
SstI GAGCTC 1 cut(s) 1088
StyI CCWWGG 7 cut(s) 117, 140, 623, 713, 1261, 1755, 1903
TaaI ACNGT 4 cut(s) 379, 595, 748, 853
TaiI ACGT 2 cut(s) 860, 1535
TaqI TCGA 9 cut(s) 462, 478, 905, 1032, 1251, 1257, 1268, 1565, 1740
TasI AATT 5 cut(s) 189, 290, 488, 600, 957
TatI WGTACW 1 cut(s) 822
TauI GCSGC 2 cut(s) 179, 866
TfiI GAWTC 7 cut(s) 230, 392, 668, 701, 1095, 1777, 1796
Tru1I TTAA 1 cut(s) 960
Tru9I TTAA 1 cut(s) 960
TscAI CASTG 2 cut(s) 541, 1456
TseFI GTSAC 4 cut(s) 589, 1351, 1528, 1718
TseI GCWGC 4 cut(s) 692, 976, 1366, 1471
Tsp45I GTSAC 4 cut(s) 589, 1351, 1528, 1718
TspDTI ATGAA 3 cut(s) 792, 1087, 1707
TspGWI ACGGA 1 cut(s) 1276
TspMI CCCGGG 5 cut(s) 74, 89, 677, 1588, 1791
TspRI CASTG 2 cut(s) 541, 1456
Van91I CCANNNNNTGG 1 cut(s) 146
VpaK11BI GGWCC 8 cut(s) 260, 367, 645, 817, 1006, 1423, 1592, 1707
XapI RAATTY 1 cut(s) 290
XceI RCATGY 1 cut(s) 898
XcmI CCANNNNNNNNNTGG 1 cut(s) 207
XmaI CCCGGG 5 cut(s) 74, 89, 677, 1588, 1791
XmaJI CCTAGG 2 cut(s) 623, 1261
XmiI GTMKAC 2 cut(s) 1257, 1535
XmnI GAANNNNTTC 1 cut(s) 705
XspI CTAG 8 cut(s) 180, 624, 867, 884, 938, 1124, 1130, 1262
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.