Rmu_sc0000706.1_g000030

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000706.1
OG0000087
Physical Location & Seq
Forward (+)
125080 .. 127315
2236 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000706.1_g000030.1.cds

Sequence Viewer

Length: 1809 bp
atgctaacccttgtgcttctggttccagatatagcaagatttgaggttcccggtaccgtaattaggatggaatcagaagccaggggtggggatacgggatcgtcgtaccagtcctctgccaggcaagctgaagtggacatcgaccggtacctaggccgggtagaccaattagcggagaacacggggtcctcgactggggtgttctctgagagtagtggggagtccgacgagggtgagagtgagggtggatctgcggaggctccggtagtcacagtggccattcccgagggcattcctaagccaaggtacacgcttgcggacgggaccgtatgcgacgaacctgggagaagcatgacgatgaaggagatcgtagacatgtggctgaagtgggggataccggacgcagtagagcttaggccacttagggatggggagatggccacgaatcctgccctggggtgggtggcgctgcacgagaatcagctccatcgagggttatcgctacccctaccccggtgtctacagtatctgctgcggatgctgaacctgtcaccggggcagttgaccccgaatgtcgttcggcaaatatatagtatgatggctatgtgggacctgtgccagcaagggtggccttccataaatgagttccgcgcggtaccccgggtattgtactcaaggaagcagtcttgtgcgggtacggtgacctttgccgctagggattacgagccgctagttaccgatatgcctacctcgatgagcaaaaggtggaggaacaaagtgttcctagctggtgggcggtggcagatcaaaaataagaagtggcagctgactggtacctttcaagctatcggggaccagtcctataagctatccgaagtggaaaagaagaggatagcccgggtatatgccgtgtggtcggagaaagagaggagctcttatagattcatccggcactctatactctttaggccagggttagggtggctccccgtgaaagccccgaagaggaaaccccggaaaggcaaggaagaggacaggatggatgacgctcaactgatggacatgctgatgagccagggagaagatgccctgcacatcgacgtcgacctagggtcgaaaggcacgagtcggtccattgaagagacccttttggagataaccgatgagggatacggtgaacctgatcccgacgctcctgtggcccaccccgtgcagccctccatggccgatgtcattacgatagatgacatcgaaatgggaaaagcactcttcaatgtgtacgccatcgacgccagtgaggaggatactcatgtgaaggaggaggttagcaatctctctgggcaggtgaagtaccttcatggcgagaaggccaagctggagaaggagcgggactcgttgagggctgagatggccgcctctaagcagcggattgcggatcttgagggtgaggttgctgaggcgcgggaggaggtaaagaatgcccgagactctgagaagaaggctgcagagtctgccgtctcatggaaggagaaagcagactctctggaggatcgcctacccgcggagaggcacgaggccgtggaggagtacaagtcctcagatgatcttatctccatgctggctgctgcccaagataaggctgtcatcatgaagtttaaggagtgggtggcggccgggtatctagatgaggccaaattcaggcggggtctcctggagaaaaagaagaaagagcgggaggcggcgggcaagtcgcaagtctggtaccgatggggatcggttgtaaagattttactttgtattactttttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_28

Protein Analysis

602

Amino Acids

67.54

Weight (kDa)

5.45

Isoelectric Point (pI)

43.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000087)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28970 FvH4_2g03432 FvH4_2g17701 FvH4_4g10000 FvH4_4g15481 FvH4_4g15603 FvH4_6g16061 FvH4_6g25501
rosa_chinensis RchiOBHm_Chr2g0137471 RchiOBHm_Chr5g0054331
rosa_laevigata RLG00000019477 RLG00000022653 RLG00000029242
rosa_multiflora Rmu_co8012786.1_g000001 Rmu_co8165502.1_g000001 Rmu_co8383963.1_g000001 Rmu_co8428657.1_g000002 Rmu_co8441559.1_g000002 Rmu_co8493267.1_g000002 Rmu_co8512765.1_g000001 Rmu_co8522487.1_g000001 Rmu_sc0000045.1_g000034 Rmu_sc0000077.1_g000002 Rmu_sc0000177.1_g000003 Rmu_sc0000194.1_g000003 Rmu_sc0000239.1_g000073 Rmu_sc0000265.1_g000006 Rmu_sc0000271.1_g000031 Rmu_sc0000276.1_g000021 Rmu_sc0000279.1_g000008 Rmu_sc0000280.1_g000017 Rmu_sc0000315.1_g000047 Rmu_sc0000381.1_g000029 Rmu_sc0000423.1_g000013 Rmu_sc0000455.1_g000020 Rmu_sc0000596.1_g000032 Rmu_sc0000605.1_g000020 Rmu_sc0000643.1_g000006 Rmu_sc0000676.1_g000028 Rmu_sc0000698.1_g000063 Rmu_sc0000698.1_g000064 Rmu_sc0000706.1_g000030 Rmu_sc0000744.1_g000078 Rmu_sc0000744.1_g000098 Rmu_sc0000779.1_g000016 Rmu_sc0000808.1_g000006 Rmu_sc0000830.1_g000044 Rmu_sc0000842.1_g000021 Rmu_sc0000883.1_g000019 Rmu_sc0000904.1_g000013 Rmu_sc0000924.1_g000001 Rmu_sc0000959.1_g000012 Rmu_sc0001045.1_g000005 Rmu_sc0001069.1_g000021 Rmu_sc0001107.1_g000001 Rmu_sc0001155.1_g000006 Rmu_sc0001244.1_g000023 Rmu_sc0001302.1_g000017 Rmu_sc0001382.1_g000007 Rmu_sc0001393.1_g000026 Rmu_sc0001436.1_g000015 Rmu_sc0001464.1_g000021 Rmu_sc0001477.1_g000001 Rmu_sc0001483.1_g000024 Rmu_sc0001483.1_g000026 Rmu_sc0001499.1_g000020 Rmu_sc0001518.1_g000001 Rmu_sc0001520.1_g000003 Rmu_sc0001522.1_g000020 Rmu_sc0001529.1_g000008 Rmu_sc0001554.1_g000016 Rmu_sc0001563.1_g000018 Rmu_sc0001565.1_g000024 Rmu_sc0001578.1_g000014 Rmu_sc0001611.1_g000003 Rmu_sc0001700.1_g000026 Rmu_sc0001849.1_g000075 Rmu_sc0001866.1_g000011 Rmu_sc0001898.1_g000013 Rmu_sc0002029.1_g000007 Rmu_sc0002082.1_g000055 Rmu_sc0002206.1_g000032 Rmu_sc0002253.1_g000031 Rmu_sc0002264.1_g000020 Rmu_sc0002414.1_g000024 Rmu_sc0002451.1_g000063 Rmu_sc0002490.1_g000015 Rmu_sc0002539.1_g000010 Rmu_sc0002545.1_g000060 Rmu_sc0002564.1_g000020 Rmu_sc0002584.1_g000062 Rmu_sc0002669.1_g000034 Rmu_sc0002669.1_g000035 Rmu_sc0002690.1_g000010 Rmu_sc0002764.1_g000070 Rmu_sc0002786.1_g000006 Rmu_sc0002804.1_g000013 Rmu_sc0002868.1_g000015 Rmu_sc0002868.1_g000055 Rmu_sc0002889.1_g000039 Rmu_sc0002892.1_g000070 Rmu_sc0002926.1_g000001 Rmu_sc0002986.1_g000063 Rmu_sc0003032.1_g000023 Rmu_sc0003033.1_g000059 Rmu_sc0003063.1_g000022 Rmu_sc0003079.1_g000001 Rmu_sc0003092.1_g000012 Rmu_sc0003244.1_g000013 Rmu_sc0003276.1_g000004 Rmu_sc0003328.1_g000003 Rmu_sc0003352.1_g000034 Rmu_sc0003352.1_g000035 Rmu_sc0003419.1_g000038 Rmu_sc0003551.1_g000015 Rmu_sc0003669.1_g000036 Rmu_sc0003760.1_g000029 Rmu_sc0003781.1_g000021 Rmu_sc0003865.1_g000002 Rmu_sc0004012.1_g000010 Rmu_sc0004140.1_g000028 Rmu_sc0004152.1_g000002 Rmu_sc0004303.1_g000009 Rmu_sc0004336.1_g000039 Rmu_sc0004365.1_g000012 Rmu_sc0004365.1_g000013 Rmu_sc0004379.1_g000010 Rmu_sc0004529.1_g000017 Rmu_sc0004529.1_g000018 Rmu_sc0004536.1_g000025 Rmu_sc0004574.1_g000019 Rmu_sc0004602.1_g000042 Rmu_sc0004836.1_g000018 Rmu_sc0004841.1_g000037 Rmu_sc0004903.1_g000006 Rmu_sc0004977.1_g000006 Rmu_sc0005137.1_g000025 Rmu_sc0005292.1_g000031 Rmu_sc0005292.1_g000032 Rmu_sc0005353.1_g000014 Rmu_sc0005406.1_g000005 Rmu_sc0005469.1_g000016 Rmu_sc0005506.1_g000003 Rmu_sc0005507.1_g000003 Rmu_sc0005629.1_g000006 Rmu_sc0005664.1_g000033 Rmu_sc0005665.1_g000042 Rmu_sc0005685.1_g000003 Rmu_sc0006375.1_g000004 Rmu_sc0006444.1_g000020 Rmu_sc0006453.1_g000012 Rmu_sc0006676.1_g000013 Rmu_sc0006934.1_g000001 Rmu_sc0006945.1_g000001 Rmu_sc0006945.1_g000006 Rmu_sc0006954.1_g000015 Rmu_sc0007102.1_g000012 Rmu_sc0007144.1_g000007 Rmu_sc0007144.1_g000008 Rmu_sc0007230.1_g000003 Rmu_sc0007415.1_g000040 Rmu_sc0007729.1_g000001 Rmu_sc0007920.1_g000017 Rmu_sc0008058.1_g000023 Rmu_sc0008199.1_g000008 Rmu_sc0008232.1_g000010 Rmu_sc0008232.1_g000011 Rmu_sc0008336.1_g000011 Rmu_sc0008581.1_g000007 Rmu_sc0008623.1_g000002 Rmu_sc0009255.1_g000007 Rmu_sc0009479.1_g000008 Rmu_sc0009483.1_g000001 Rmu_sc0009641.1_g000001 Rmu_sc0009660.1_g000003 Rmu_sc0009978.1_g000010 Rmu_sc0010048.1_g000009 Rmu_sc0010547.1_g000007 Rmu_sc0010988.1_g000006 Rmu_sc0011148.1_g000003 Rmu_sc0011203.1_g000010 Rmu_sc0011375.1_g000004 Rmu_sc0011375.1_g000005 Rmu_sc0011559.1_g000005 Rmu_sc0012199.1_g000001 Rmu_sc0013224.1_g000005 Rmu_sc0013931.1_g000004 Rmu_sc0013931.1_g000005 Rmu_sc0013985.1_g000006 Rmu_sc0014406.1_g000001 Rmu_sc0014463.1_g000002 Rmu_sc0016218.1_g000005 Rmu_sc0019345.1_g000002 Rmu_sc0019655.1_g000001 Rmu_sc0020833.1_g000001 Rmu_sc0024204.1_g000001 Rmu_sc0024309.1_g000001 Rmu_sc0027177.1_g000002 Rmu_sc0027778.1_g000002 Rmu_sc0028215.1_g000001 Rmu_sc0029924.1_g000001 Rmu_sc0032552.1_g000001 Rmu_sc0036156.1_g000001 Rmu_sc0037073.1_g000001 Rmu_sc0040495.1_g000001 Rmu_ssc0000255.1_g000056 Rmu_ssc0000309.1_g000006 Rmu_ssc0000312.1_g000005 Rmu_ssc0000371.1_g000021 Rmu_ssc0000372.1_g000010 Rmu_ssc0000372.1_g000011 Rmu_ssc0000372.1_g000069 Rmu_ssc0000386.1_g000005 Rmu_ssc0000386.1_g000006 Rmu_ssc0000443.1_g000032
rosa_roxburghii Rroxscaffold_154G00447940 Rroxscaffold_1G00009660 Rroxscaffold_1G00016990 Rroxscaffold_1G00021370 Rroxscaffold_1G00037860 Rroxscaffold_2G00101680 Rroxscaffold_2G00101690 Rroxscaffold_2G00122690 Rroxscaffold_2G00122700 Rroxscaffold_2G00123340 Rroxscaffold_2G00123350 Rroxscaffold_2G00125480 Rroxscaffold_2G00136130 Rroxscaffold_2G00146590 Rroxscaffold_3G00218350 Rroxscaffold_3G00218360 Rroxscaffold_3G00218370 Rroxscaffold_3G00218380 Rroxscaffold_3G00232530 Rroxscaffold_3G00262600 Rroxscaffold_3G00263070 Rroxscaffold_4G00289030 Rroxscaffold_4G00296530 Rroxscaffold_4G00306140 Rroxscaffold_4G00306150 Rroxscaffold_4G00306380 Rroxscaffold_4G00306390 Rroxscaffold_4G00306400 Rroxscaffold_4G00309560 Rroxscaffold_4G00316600 Rroxscaffold_4G00322820 Rroxscaffold_4G00322830 Rroxscaffold_4G00324370 Rroxscaffold_4G00332350 Rroxscaffold_5G00346450 Rroxscaffold_5G00352960 Rroxscaffold_5G00352970 Rroxscaffold_5G00360310 Rroxscaffold_5G00373670 Rroxscaffold_5G00378610 Rroxscaffold_5G00378940 Rroxscaffold_6G00388240 Rroxscaffold_6G00389010 Rroxscaffold_6G00389030 Rroxscaffold_6G00399900 Rroxscaffold_6G00399910 Rroxscaffold_6G00400260 Rroxscaffold_6G00400270 Rroxscaffold_6G00400280 Rroxscaffold_7G00164100 Rroxscaffold_7G00176300 Rroxscaffold_7G00176310 Rroxscaffold_7G00177210 Rroxscaffold_7G00204300 Rroxscaffold_7G00204310 Rroxscaffold_7G00204320
rosa_rugosa Rorug06G0076500
rosa_samantha Rh1AG108400 Rh2AG377100 Rh2AG377200 Rh2BG383500 Rh2CG362800 Rh2DG399900 Rh2DG439600 Rh2DG672800 Rh6DG186300 Rh7AG351400 Rh7BG368500 Rh7CG368800 Rh7CG411100 Rh7DG424400
rosa_wichuraiana Rw1G021100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1333
AatII GACGTC 1 cut(s) 1104
Acc36I ACCTGC 1 cut(s) 1333
Acc65I GGTACC 5 cut(s) 53, 147, 655, 833, 1761
AccB1I GGYRCC 5 cut(s) 53, 147, 655, 833, 1761
AccBSI CCGCTC 2 cut(s) 1387, 1732
AccI GTMKAC 4 cut(s) 162, 372, 520, 1104
AccII CGCG 4 cut(s) 651, 653, 1462, 1562
AclWI GGATC 6 cut(s) 106, 256, 1178, 1443, 1557, 1780
AcoI YGGCCR 5 cut(s) 276, 438, 1224, 1410, 1671
AcsI RAATTY 1 cut(s) 1694
AcuI CTGAAG 2 cut(s) 150, 404
AcyI GRCGYC 2 cut(s) 1101, 1290
AdeI CACNNNGTG 1 cut(s) 1210
AflIII ACRYGT 1 cut(s) 375
AgeI ACCGGT 1 cut(s) 144
AgsI TTSAA 3 cut(s) 842, 1139, 1273
AhdI GACNNNNNGTC 1 cut(s) 1111
AjnI CCWGG 7 cut(s) 80, 119, 340, 453, 970, 1074, 1710
AloI GAACNNNNNNTCC 2 cut(s) 170, 202
AluBI AGCT 9 cut(s) 128, 412, 484, 788, 826, 845, 868, 933, 1375
AluI AGCT 9 cut(s) 128, 412, 484, 788, 826, 845, 868, 933, 1375
Alw21I GWGCWC 1 cut(s) 935
Alw26I GTCTC 4 cut(s) 1136, 1479, 1522, 1712
AlwI GGATC 6 cut(s) 106, 256, 1178, 1443, 1557, 1780
AlwNI CAGNNNCTG 2 cut(s) 529, 1511
Ama87I CYCGRG 4 cut(s) 284, 660, 897, 1482
ApeKI GCWGC 8 cut(s) 469, 532, 823, 1213, 1423, 1502, 1622, 1625
ApoI RAATTY 1 cut(s) 1694
AsiGI ACCGGT 1 cut(s) 144
Asp718I GGTACC 5 cut(s) 53, 147, 655, 833, 1761
AspA2I CCTAGG 2 cut(s) 151, 1108
AspLEI GCGC 3 cut(s) 469, 653, 1462
AspS9I GGNCC 6 cut(s) 186, 324, 610, 853, 1131, 1201
AsuHPI GGTGA 6 cut(s) 245, 543, 712, 1187, 1357, 1457
AvaI CYCGRG 4 cut(s) 284, 660, 897, 1482
AvaII GGWCC 5 cut(s) 186, 324, 610, 853, 1131
AvrII CCTAGG 2 cut(s) 151, 1108
BaeI ACNNNNGTAYC 2 cut(s) 1296, 1329
BalI TGGCCA 2 cut(s) 278, 440
BanI GGYRCC 5 cut(s) 53, 147, 655, 833, 1761
BanII GRGCYC 1 cut(s) 935
BauI CACGAG 3 cut(s) 473, 1123, 1571
Bbv12I GWGCWC 1 cut(s) 935
BbvCI CCTCAGC 1 cut(s) 1455
BbvI GCAGC 8 cut(s) 456, 519, 835, 1225, 1435, 1489, 1609, 1612
BceAI ACGGC 3 cut(s) 893, 1499, 1562
BciT130I CCWGG 7 cut(s) 82, 121, 342, 455, 972, 1076, 1712
BciVI GTATCC 4 cut(s) 85, 387, 1163, 1297
BcoDI GTCTC 4 cut(s) 1136, 1479, 1522, 1712
BfaI CTAG 6 cut(s) 152, 714, 731, 785, 1109, 1682
BfmI CTRYAG 2 cut(s) 521, 1503
BfoI RGCGCY 1 cut(s) 470
BfuAI ACCTGC 1 cut(s) 1333
BfuI GTATCC 4 cut(s) 85, 387, 1163, 1297
BlnI CCTAGG 2 cut(s) 151, 1108
Bme18I GGWCC 5 cut(s) 186, 324, 610, 853, 1131
BmeRI GACNNNNNGTC 1 cut(s) 1111
BmeT110I CYCGRG 4 cut(s) 284, 660, 897, 1482
BmgT120I GGNCC 6 cut(s) 186, 324, 610, 853, 1131, 1201
BmrI ACTGGG 1 cut(s) 204
BmsI GCATC 2 cut(s) 528, 1075
BmuI ACTGGG 1 cut(s) 204
BplI GAGNNNNNCTC 4 cut(s) 917, 949, 1376, 1408
BpmI CTGGAG 3 cut(s) 1397, 1565, 1733
Bpu10I CCTNAGC 3 cut(s) 297, 413, 1455
BpuEI CTTGAG 2 cut(s) 658, 1460
BsaBI GATNNNNATC 1 cut(s) 1771
BsaHI GRCGYC 2 cut(s) 1101, 1290
BsaI GGTCTC 2 cut(s) 1136, 1712
BsaWI WCCGGW 3 cut(s) 144, 262, 397
BsaXI ACNNNNNCTCC 2 cut(s) 1577, 1607
Bse118I RCCGGY 1 cut(s) 144
Bse1I ACTGG 5 cut(s) 109, 199, 835, 856, 1293
Bse8I GATNNNNATC 1 cut(s) 1771
BseBI CCWGG 7 cut(s) 82, 121, 342, 455, 972, 1076, 1712
BseGI GGATG 6 cut(s) 72, 433, 543, 945, 1044, 1048
BseJI GATNNNNATC 1 cut(s) 1771
BseMII CTCAG 5 cut(s) 198, 1395, 1446, 1482, 1611
BseNI ACTGG 5 cut(s) 109, 199, 835, 856, 1293
BseRI GAGGAG 5 cut(s) 943, 1313, 1334, 1481, 1598
BseX3I CGGCCG 1 cut(s) 1671
BseXI GCAGC 8 cut(s) 456, 519, 835, 1225, 1435, 1489, 1609, 1612
BsgI GTGCAG 3 cut(s) 455, 1076, 1232
Bsh1236I CGCG 4 cut(s) 651, 653, 1462, 1562
Bsh1285I CGRYCG 2 cut(s) 145, 1674
BshNI GGYRCC 5 cut(s) 53, 147, 655, 833, 1761
BshTI ACCGGT 1 cut(s) 144
BsiEI CGRYCG 2 cut(s) 145, 1674
BsiHKAI GWGCWC 1 cut(s) 935
BsiHKCI CYCGRG 4 cut(s) 284, 660, 897, 1482
BslFI GGGAC 4 cut(s) 337, 623, 866, 1403
BsmAI GTCTC 4 cut(s) 1136, 1479, 1522, 1712
BsmBI CGTCTC 1 cut(s) 1522
BsmFI GGGAC 4 cut(s) 337, 623, 866, 1403
BsmI GAATGC 2 cut(s) 291, 1483
Bso31I GGTCTC 2 cut(s) 1136, 1712
BsoBI CYCGRG 4 cut(s) 284, 660, 897, 1482
Bsp1286I GDGCHC 1 cut(s) 935
Bsp143I GATC 9 cut(s) 98, 248, 366, 804, 1183, 1435, 1549, 1603, 1772
Bsp19I CCATGG 1 cut(s) 1221
BspCNI CTCAG 5 cut(s) 199, 1396, 1447, 1483, 1610
BspFNI CGCG 4 cut(s) 651, 653, 1462, 1562
BspHI TCATGA 1 cut(s) 1647
BspMAI CTGCAG 1 cut(s) 1507
BspMI ACCTGC 1 cut(s) 1333
BspPI GGATC 6 cut(s) 106, 256, 1178, 1443, 1557, 1780
BspT107I GGYRCC 5 cut(s) 53, 147, 655, 833, 1761
BspTNI GGTCTC 2 cut(s) 1136, 1712
BsrBI CCGCTC 2 cut(s) 1387, 1732
BsrFI RCCGGY 1 cut(s) 144
BsrI ACTGG 5 cut(s) 109, 199, 835, 856, 1293
BssAI RCCGGY 1 cut(s) 144
BssMI GATC 9 cut(s) 98, 248, 366, 804, 1183, 1435, 1549, 1603, 1772
BssNI GRCGYC 2 cut(s) 1101, 1290
BssSI CACGAG 3 cut(s) 473, 1123, 1571
BssT1I CCWWGG 4 cut(s) 151, 302, 1108, 1221
Bst2BI CACGAG 3 cut(s) 473, 1123, 1571
Bst2UI CCWGG 7 cut(s) 82, 121, 342, 455, 972, 1076, 1712
Bst4CI ACNGT 6 cut(s) 58, 274, 328, 525, 700, 1175
Bst6I CTCTTC 5 cut(s) 881, 998, 1023, 1134, 1274
BstACI GRCGYC 2 cut(s) 1101, 1290
BstAPI GCANNNNNTGC 1 cut(s) 1511
BstC8I GCNNGC 5 cut(s) 126, 315, 620, 1620, 1744
BstDEI CTNAG 9 cut(s) 207, 297, 413, 422, 1404, 1419, 1455, 1491, 1597
BstDSI CCRYGG 3 cut(s) 1221, 1560, 1578
BstEII GGTNACC 1 cut(s) 700
BstENI CCTNNNNNAGG 1 cut(s) 118
BstF5I GGATG 6 cut(s) 72, 433, 543, 945, 1044, 1048
BstFNI CGCG 4 cut(s) 651, 653, 1462, 1562
BstH2I RGCGCY 1 cut(s) 470
BstHHI GCGC 3 cut(s) 469, 653, 1462
BstKTI GATC 9 cut(s) 101, 251, 369, 807, 1186, 1438, 1552, 1606, 1775
BstMAI GTCTC 4 cut(s) 1136, 1479, 1522, 1712
BstMBI GATC 9 cut(s) 98, 248, 366, 804, 1183, 1435, 1549, 1603, 1772
BstMCI CGRYCG 2 cut(s) 145, 1674
BstMWI GCNNNNNNNGC 7 cut(s) 125, 538, 628, 1199, 1289, 1409, 1511
BstNI CCWGG 7 cut(s) 82, 121, 342, 455, 972, 1076, 1712
BstNSI RCATGY 2 cut(s) 379, 1066
BstPI GGTNACC 1 cut(s) 700
BstSFI CTRYAG 2 cut(s) 521, 1503
BstUI CGCG 4 cut(s) 651, 653, 1462, 1562
BstV1I GCAGC 8 cut(s) 456, 519, 835, 1225, 1435, 1489, 1609, 1612
BstX2I RGATCY 2 cut(s) 248, 1435
BstYI RGATCY 2 cut(s) 248, 1435
BstZI CGGCCG 1 cut(s) 1671
BsuI GTATCC 4 cut(s) 85, 387, 1163, 1297
BtgI CCRYGG 3 cut(s) 1221, 1560, 1578
BtsCI GGATG 6 cut(s) 72, 433, 543, 945, 1044, 1048
BtsIMutI CAGTG 2 cut(s) 279, 1300
BveI ACCTGC 1 cut(s) 1333
Cac8I GCNNGC 5 cut(s) 126, 315, 620, 1620, 1744
CaiI CAGNNNCTG 2 cut(s) 529, 1511
CciI TCATGA 1 cut(s) 1647
CfoI GCGC 3 cut(s) 469, 653, 1462
Cfr10I RCCGGY 1 cut(s) 144
Cfr13I GGNCC 6 cut(s) 186, 324, 610, 853, 1131, 1201
Cfr42I CCGCGG 1 cut(s) 1563
Cfr9I CCCGGG 2 cut(s) 660, 897
CseI GACGC 4 cut(s) 410, 1055, 1199, 1298
CspAI ACCGGT 1 cut(s) 144
CviAII CATG 9 cut(s) 352, 376, 1063, 1222, 1310, 1358, 1521, 1615, 1648
DdeI CTNAG 9 cut(s) 207, 297, 413, 422, 1404, 1419, 1455, 1491, 1597
DpnI GATC 9 cut(s) 100, 250, 368, 806, 1185, 1437, 1551, 1605, 1774
DpnII GATC 9 cut(s) 98, 248, 366, 804, 1183, 1435, 1549, 1603, 1772
DraIII CACNNNGTG 1 cut(s) 1210
DriI GACNNNNNGTC 1 cut(s) 1111
EaeI YGGCCR 5 cut(s) 276, 438, 1224, 1410, 1671
EagI CGGCCG 1 cut(s) 1671
Eam1104I CTCTTC 5 cut(s) 881, 998, 1023, 1134, 1274
Eam1105I GACNNNNNGTC 1 cut(s) 1111
EarI CTCTTC 5 cut(s) 881, 998, 1023, 1134, 1274
Ecl136II GAGCTC 1 cut(s) 933
EclXI CGGCCG 1 cut(s) 1671
Eco130I CCWWGG 4 cut(s) 151, 302, 1108, 1221
Eco24I GRGCYC 1 cut(s) 935
Eco31I GGTCTC 2 cut(s) 1136, 1712
Eco47I GGWCC 5 cut(s) 186, 324, 610, 853, 1131
Eco52I CGGCCG 1 cut(s) 1671
Eco53kI GAGCTC 1 cut(s) 933
Eco57I CTGAAG 2 cut(s) 150, 404
Eco88I CYCGRG 4 cut(s) 284, 660, 897, 1482
Eco91I GGTNACC 1 cut(s) 700
EcoICRI GAGCTC 1 cut(s) 933
EcoNI CCTNNNNNAGG 1 cut(s) 118
EcoO109I RGGNCCY 2 cut(s) 186, 610
EcoO65I GGTNACC 1 cut(s) 700
EcoRII CCWGG 7 cut(s) 80, 119, 340, 453, 970, 1074, 1710
EcoT14I CCWWGG 4 cut(s) 151, 302, 1108, 1221
EcoT38I GRGCYC 1 cut(s) 935
ErhI CCWWGG 4 cut(s) 151, 302, 1108, 1221
Esp3I CGTCTC 1 cut(s) 1522
FaeI CATG 9 cut(s) 355, 379, 1066, 1225, 1313, 1361, 1524, 1618, 1651
FalI AAGNNNNNCTT 2 cut(s) 1131, 1163
FaqI GGGAC 4 cut(s) 337, 623, 866, 1403
FatI CATG 9 cut(s) 351, 375, 1062, 1221, 1309, 1357, 1520, 1614, 1647
FauI CCCGC 7 cut(s) 685, 1380, 1455, 1567, 1695, 1725, 1735
FblI GTMKAC 4 cut(s) 162, 372, 520, 1104
FokI GGATG 6 cut(s) 79, 440, 550, 932, 1051, 1055
FriOI GRGCYC 1 cut(s) 935
FspBI CTAG 6 cut(s) 152, 714, 731, 785, 1109, 1682
GlaI GCGC 3 cut(s) 468, 652, 1461
GsuI CTGGAG 3 cut(s) 1397, 1565, 1733
HaeII RGCGCY 1 cut(s) 470
HgaI GACGC 4 cut(s) 410, 1055, 1199, 1298
HhaI GCGC 3 cut(s) 469, 653, 1462
Hin1I GRCGYC 2 cut(s) 1101, 1290
Hin1II CATG 9 cut(s) 355, 379, 1066, 1225, 1313, 1361, 1524, 1618, 1651
Hin6I GCGC 3 cut(s) 467, 651, 1460
HinP1I GCGC 3 cut(s) 467, 651, 1460
HincII GTYRAC 2 cut(s) 564, 1105
HindII GTYRAC 2 cut(s) 564, 1105
HphI GGTGA 6 cut(s) 245, 543, 712, 1187, 1357, 1457
Hpy166II GTNNAC 9 cut(s) 136, 163, 309, 373, 521, 564, 1105, 1178, 1279
Hpy188I TCNGA 7 cut(s) 76, 208, 226, 874, 919, 1492, 1600
Hpy188III TCNNGA 7 cut(s) 26, 284, 1187, 1439, 1544, 1648, 1682
Hpy8I GTNNAC 9 cut(s) 136, 163, 309, 373, 521, 564, 1105, 1178, 1279
Hpy99I CGWCG 7 cut(s) 106, 230, 338, 1103, 1106, 1193, 1292
HpyAV CCTTC 8 cut(s) 355, 642, 1309, 1360, 1364, 1375, 1492, 1519
HpyCH4III ACNGT 6 cut(s) 58, 274, 328, 525, 700, 1175
HpyCH4IV ACGT 1 cut(s) 1101
HpyCH4V TGCA 4 cut(s) 472, 1093, 1213, 1505
HpyF10VI GCNNNNNNNGC 7 cut(s) 125, 538, 628, 1199, 1289, 1409, 1511
HpyF3I CTNAG 9 cut(s) 207, 297, 413, 422, 1404, 1419, 1455, 1491, 1597
HpySE526I ACGT 1 cut(s) 1101
Hsp92I GRCGYC 2 cut(s) 1101, 1290
Hsp92II CATG 9 cut(s) 355, 379, 1066, 1225, 1313, 1361, 1524, 1618, 1651
HspAI GCGC 3 cut(s) 467, 651, 1460
KpnI GGTACC 5 cut(s) 57, 151, 659, 837, 1765
KspI CCGCGG 1 cut(s) 1563
Kzo9I GATC 9 cut(s) 98, 248, 366, 804, 1183, 1435, 1549, 1603, 1772
LmnI GCTCC 6 cut(s) 265, 489, 930, 990, 1198, 1384
Lsp1109I GCAGC 8 cut(s) 456, 519, 835, 1225, 1435, 1489, 1609, 1612
LweI GCATC 2 cut(s) 528, 1075
MaeI CTAG 6 cut(s) 152, 714, 731, 785, 1109, 1682
MaeII ACGT 1 cut(s) 1101
MaeIII GTNAC 4 cut(s) 268, 549, 700, 733
MalI GATC 9 cut(s) 100, 250, 368, 806, 1185, 1437, 1551, 1605, 1774
MbiI CCGCTC 2 cut(s) 1387, 1732
MboI GATC 9 cut(s) 98, 248, 366, 804, 1183, 1435, 1549, 1603, 1772
MboII GAAGA 8 cut(s) 898, 1015, 1040, 1094, 1151, 1261, 1507, 1735
MflI RGATCY 2 cut(s) 248, 1435
MhlI GDGCHC 1 cut(s) 935
MlsI TGGCCA 2 cut(s) 278, 440
MluCI AATT 3 cut(s) 60, 167, 1694
MluNI TGGCCA 2 cut(s) 278, 440
MlyI GAGTC 6 cut(s) 230, 1135, 1385, 1481, 1517, 1532
MmeI TCCRAC 2 cut(s) 249, 897
Mox20I TGGCCA 2 cut(s) 278, 440
MscI TGGCCA 2 cut(s) 278, 440
MseI TTAA 1 cut(s) 1656
MslI CAYNNNNRTG 3 cut(s) 356, 1067, 1253
Msp20I TGGCCA 2 cut(s) 278, 440
MspA1I CMGCKG 3 cut(s) 826, 1426, 1562
Mva1269I GAATGC 2 cut(s) 291, 1483
MvaI CCWGG 7 cut(s) 82, 121, 342, 455, 972, 1076, 1712
MvnI CGCG 4 cut(s) 651, 653, 1462, 1562
MwoI GCNNNNNNNGC 7 cut(s) 125, 538, 628, 1199, 1289, 1409, 1511
NcoI CCATGG 1 cut(s) 1221
NdeII GATC 9 cut(s) 98, 248, 366, 804, 1183, 1435, 1549, 1603, 1772
NlaIII CATG 9 cut(s) 355, 379, 1066, 1225, 1313, 1361, 1524, 1618, 1651
NmuCI GTSAC 3 cut(s) 268, 549, 700
NspI RCATGY 2 cut(s) 379, 1066
PagI TCATGA 1 cut(s) 1647
PaqCI CACCTGC 1 cut(s) 1333
PasI CCCWGGG 1 cut(s) 454
PciI ACATGT 1 cut(s) 375
PcsI WCGNNNNNNNCGW 3 cut(s) 101, 188, 1121
PctI GAATGC 2 cut(s) 291, 1483
PfeI GAWTC 4 cut(s) 71, 445, 478, 942
PfoI TCCNGGA 1 cut(s) 1710
PinAI ACCGGT 1 cut(s) 144
PleI GAGTC 6 cut(s) 229, 1134, 1385, 1481, 1516, 1532
PpsI GAGTC 6 cut(s) 229, 1134, 1385, 1481, 1516, 1532
PpuMI RGGWCCY 2 cut(s) 186, 610
PscI ACATGT 1 cut(s) 375
Psp124BI GAGCTC 1 cut(s) 935
Psp5II RGGWCCY 2 cut(s) 186, 610
Psp6I CCWGG 7 cut(s) 80, 119, 340, 453, 970, 1074, 1710
PspEI GGTNACC 1 cut(s) 700
PspGI CCWGG 7 cut(s) 80, 119, 340, 453, 970, 1074, 1710
PspPI GGNCC 6 cut(s) 186, 324, 610, 853, 1131, 1201
PspPPI RGGWCCY 2 cut(s) 186, 610
PstI CTGCAG 1 cut(s) 1507
PstNI CAGNNNCTG 2 cut(s) 529, 1511
PsuI RGATCY 2 cut(s) 248, 1435
PvuII CAGCTG 1 cut(s) 826
RseI CAYNNNNRTG 3 cut(s) 356, 1067, 1253
SacI GAGCTC 1 cut(s) 935
SacII CCGCGG 1 cut(s) 1563
SalI GTCGAC 1 cut(s) 1103
SaqAI TTAA 1 cut(s) 1656
Sau3AI GATC 9 cut(s) 98, 248, 366, 804, 1183, 1435, 1549, 1603, 1772
Sau96I GGNCC 6 cut(s) 186, 324, 610, 853, 1131, 1201
SchI GAGTC 6 cut(s) 230, 1135, 1385, 1481, 1517, 1532
SduI GDGCHC 1 cut(s) 935
SfaNI GCATC 2 cut(s) 528, 1075
SfcI CTRYAG 2 cut(s) 521, 1503
Sfr303I CCGCGG 1 cut(s) 1563
SgrBI CCGCGG 1 cut(s) 1563
SinI GGWCC 5 cut(s) 186, 324, 610, 853, 1131
SmaI CCCGGG 2 cut(s) 662, 899
SmiMI CAYNNNNRTG 3 cut(s) 356, 1067, 1253
SmlI CTYRAG 2 cut(s) 673, 1439
SmoI CTYRAG 2 cut(s) 673, 1439
Sse9I AATT 3 cut(s) 60, 167, 1694
SspMI CTAG 6 cut(s) 152, 714, 731, 785, 1109, 1682
SstI GAGCTC 1 cut(s) 935
StyI CCWWGG 4 cut(s) 151, 302, 1108, 1221
TaaI ACNGT 6 cut(s) 58, 274, 328, 525, 700, 1175
TaiI ACGT 1 cut(s) 1104
TaqI TCGA 9 cut(s) 141, 191, 490, 752, 1098, 1104, 1115, 1251, 1287
TaqII GACCGA 1 cut(s) 1119
TasI AATT 3 cut(s) 60, 167, 1694
TatI WGTACW 2 cut(s) 669, 1587
TauI GCSGC 5 cut(s) 713, 730, 1415, 1673, 1742
TfiI GAWTC 4 cut(s) 71, 445, 478, 942
Tru1I TTAA 1 cut(s) 1656
Tru9I TTAA 1 cut(s) 1656
TscAI CASTG 2 cut(s) 279, 1300
TseFI GTSAC 3 cut(s) 268, 549, 700
TseI GCWGC 8 cut(s) 469, 532, 823, 1213, 1423, 1502, 1622, 1625
Tsp45I GTSAC 3 cut(s) 268, 549, 700
TspDTI ATGAA 4 cut(s) 374, 934, 1346, 1664
TspMI CCCGGG 2 cut(s) 660, 897
TspRI CASTG 2 cut(s) 279, 1300
VpaK11BI GGWCC 5 cut(s) 186, 324, 610, 853, 1131
XagI CCTNNNNNAGG 1 cut(s) 118
XapI RAATTY 1 cut(s) 1694
XbaI TCTAGA 1 cut(s) 1681
XceI RCATGY 2 cut(s) 379, 1066
XcmI CCANNNNNNNNNTGG 1 cut(s) 978
XmaI CCCGGG 2 cut(s) 660, 897
XmaJI CCTAGG 2 cut(s) 151, 1108
XmiI GTMKAC 4 cut(s) 162, 372, 520, 1104
XspI CTAG 6 cut(s) 152, 714, 731, 785, 1109, 1682
ZraI GACGTC 1 cut(s) 1102
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.