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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 405 |
| Acc16I | TGCGCA | 1 cut(s) | 858 |
| Acc65I | GGTACC | 1 cut(s) | 908 |
| AccB1I | GGYRCC | 2 cut(s) | 312, 908 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 750 |
| AccII | CGCG | 1 cut(s) | 904 |
| AccIII | TCCGGA | 1 cut(s) | 772 |
| AfaI | GTAC | 4 cut(s) | 142, 593, 818, 910 |
| AflII | CTTAAG | 1 cut(s) | 287 |
| AgsI | TTSAA | 3 cut(s) | 28, 586, 671 |
| AjnI | CCWGG | 1 cut(s) | 711 |
| AluBI | AGCT | 4 cut(s) | 55, 413, 667, 835 |
| AluI | AGCT | 4 cut(s) | 55, 413, 667, 835 |
| Alw21I | GWGCWC | 1 cut(s) | 837 |
| Alw26I | GTCTC | 1 cut(s) | 256 |
| Aor13HI | TCCGGA | 1 cut(s) | 772 |
| AoxI | GGCC | 4 cut(s) | 59, 69, 222, 867 |
| ApeKI | GCWGC | 3 cut(s) | 83, 854, 899 |
| AseI | ATTAAT | 1 cut(s) | 273 |
| Asp718I | GGTACC | 1 cut(s) | 908 |
| AspLEI | GCGC | 3 cut(s) | 783, 859, 904 |
| AspS9I | GGNCC | 1 cut(s) | 223 |
| AsuC2I | CCSGG | 5 cut(s) | 99, 435, 458, 499, 913 |
| AsuHPI | GGTGA | 2 cut(s) | 327, 712 |
| BaeGI | GKGCMC | 1 cut(s) | 712 |
| BanI | GGYRCC | 2 cut(s) | 312, 908 |
| BanII | GRGCYC | 2 cut(s) | 827, 837 |
| Bbv12I | GWGCWC | 1 cut(s) | 837 |
| BbvI | GCAGC | 3 cut(s) | 70, 841, 911 |
| BccI | CCATC | 5 cut(s) | 73, 96, 356, 497, 797 |
| BceAI | ACGGC | 2 cut(s) | 237, 854 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 472, 506 |
| BciT130I | CCWGG | 1 cut(s) | 713 |
| BcnI | CCSGG | 5 cut(s) | 99, 435, 458, 499, 913 |
| BcoDI | GTCTC | 1 cut(s) | 256 |
| BfaI | CTAG | 2 cut(s) | 339, 410 |
| BfoI | RGCGCY | 1 cut(s) | 784 |
| BfrI | CTTAAG | 1 cut(s) | 287 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 556 |
| BisI | GCNGC | 7 cut(s) | 84, 454, 645, 732, 848, 855, 900 |
| BlsI | GCNGC | 7 cut(s) | 85, 455, 646, 733, 849, 856, 901 |
| Bme1390I | CCNGG | 6 cut(s) | 99, 435, 458, 499, 713, 913 |
| BmgT120I | GGNCC | 1 cut(s) | 223 |
| BmiI | GGNNCC | 5 cut(s) | 225, 314, 636, 826, 910 |
| BmrFI | CCNGG | 6 cut(s) | 99, 435, 458, 499, 713, 913 |
| BmsI | GCATC | 1 cut(s) | 270 |
| Bpu10I | CCTNAGC | 1 cut(s) | 56 |
| BpuEI | CTTGAG | 2 cut(s) | 50, 964 |
| BpuMI | CCSGG | 5 cut(s) | 99, 435, 458, 499, 913 |
| Bsa29I | ATCGAT | 1 cut(s) | 294 |
| BsaBI | GATNNNNATC | 1 cut(s) | 240 |
| BsaI | GGTCTC | 1 cut(s) | 256 |
| BsaJI | CCNNGG | 4 cut(s) | 609, 684, 711, 789 |
| BsaWI | WCCGGW | 3 cut(s) | 40, 385, 772 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 809, 839 |
| Bse3DI | GCAATG | 1 cut(s) | 123 |
| Bse8I | GATNNNNATC | 1 cut(s) | 240 |
| BseAI | TCCGGA | 1 cut(s) | 772 |
| BseBI | CCWGG | 1 cut(s) | 713 |
| BseCI | ATCGAT | 1 cut(s) | 294 |
| BseDI | CCNNGG | 4 cut(s) | 609, 684, 711, 789 |
| BseGI | GGATG | 6 cut(s) | 107, 348, 517, 700, 769, 921 |
| BseJI | GATNNNNATC | 1 cut(s) | 240 |
| BseMI | GCAATG | 1 cut(s) | 123 |
| BseRI | GAGGAG | 5 cut(s) | 84, 457, 562, 647, 791 |
| BseSI | GKGCMC | 1 cut(s) | 712 |
| BseXI | GCAGC | 3 cut(s) | 70, 841, 911 |
| Bsh1236I | CGCG | 1 cut(s) | 904 |
| BshFI | GGCC | 4 cut(s) | 61, 71, 224, 869 |
| BshNI | GGYRCC | 2 cut(s) | 312, 908 |
| BshVI | ATCGAT | 1 cut(s) | 294 |
| BsiHKAI | GWGCWC | 1 cut(s) | 837 |
| BslFI | GGGAC | 3 cut(s) | 545, 556, 950 |
| BsmAI | GTCTC | 1 cut(s) | 256 |
| BsmFI | GGGAC | 3 cut(s) | 545, 556, 950 |
| BsnI | GGCC | 4 cut(s) | 61, 71, 224, 869 |
| Bso31I | GGTCTC | 1 cut(s) | 256 |
| Bsp1286I | GDGCHC | 3 cut(s) | 712, 827, 837 |
| Bsp13I | TCCGGA | 1 cut(s) | 772 |
| Bsp143I | GATC | 4 cut(s) | 9, 241, 291, 766 |
| BspANI | GGCC | 4 cut(s) | 61, 71, 224, 869 |
| BspDI | ATCGAT | 1 cut(s) | 294 |
| BspEI | TCCGGA | 1 cut(s) | 772 |
| BspFNI | CGCG | 1 cut(s) | 904 |
| BspLI | GGNNCC | 5 cut(s) | 225, 314, 636, 826, 910 |
| BspT107I | GGYRCC | 2 cut(s) | 312, 908 |
| BspTI | CTTAAG | 1 cut(s) | 287 |
| BspTNI | GGTCTC | 1 cut(s) | 256 |
| BsrDI | GCAATG | 1 cut(s) | 123 |
| BssECI | CCNNGG | 4 cut(s) | 609, 684, 711, 789 |
| BssMI | GATC | 4 cut(s) | 9, 241, 291, 766 |
| Bst2UI | CCWGG | 1 cut(s) | 713 |
| Bst6I | CTCTTC | 5 cut(s) | 123, 141, 384, 463, 698 |
| BstAFI | CTTAAG | 1 cut(s) | 287 |
| BstC8I | GCNNGC | 4 cut(s) | 130, 167, 171, 852 |
| BstDEI | CTNAG | 3 cut(s) | 56, 552, 720 |
| BstDSI | CCRYGG | 1 cut(s) | 789 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 629 |
| BstF5I | GGATG | 6 cut(s) | 107, 348, 517, 700, 769, 921 |
| BstFNI | CGCG | 1 cut(s) | 904 |
| BstH2I | RGCGCY | 1 cut(s) | 784 |
| BstHHI | GCGC | 3 cut(s) | 783, 859, 904 |
| BstKTI | GATC | 4 cut(s) | 12, 244, 294, 769 |
| BstMAI | GTCTC | 1 cut(s) | 256 |
| BstMBI | GATC | 4 cut(s) | 9, 241, 291, 766 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 480, 556, 740, 856 |
| BstNI | CCWGG | 1 cut(s) | 713 |
| BstNSI | RCATGY | 1 cut(s) | 211 |
| BstSCI | CCNGG | 6 cut(s) | 97, 433, 456, 497, 711, 911 |
| BstSLI | GKGCMC | 1 cut(s) | 712 |
| BstUI | CGCG | 1 cut(s) | 904 |
| BstV1I | GCAGC | 3 cut(s) | 70, 841, 911 |
| Bsu15I | ATCGAT | 1 cut(s) | 294 |
| BsuRI | GGCC | 4 cut(s) | 61, 71, 224, 869 |
| BsuTUI | ATCGAT | 1 cut(s) | 294 |
| BtgI | CCRYGG | 1 cut(s) | 789 |
| BtsCI | GGATG | 6 cut(s) | 107, 348, 517, 700, 769, 921 |
| Cac8I | GCNNGC | 4 cut(s) | 130, 167, 171, 852 |
| CfoI | GCGC | 3 cut(s) | 783, 859, 904 |
| Cfr13I | GGNCC | 1 cut(s) | 223 |
| ClaI | ATCGAT | 1 cut(s) | 294 |
| Csp6I | GTAC | 4 cut(s) | 141, 592, 817, 909 |
| CviAII | CATG | 4 cut(s) | 208, 214, 750, 808 |
| CviQI | GTAC | 4 cut(s) | 141, 592, 817, 909 |
| DdeI | CTNAG | 3 cut(s) | 56, 552, 720 |
| DpnI | GATC | 4 cut(s) | 11, 243, 293, 768 |
| DpnII | GATC | 4 cut(s) | 9, 241, 291, 766 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 405 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 405 |
| Eam1104I | CTCTTC | 5 cut(s) | 123, 141, 384, 463, 698 |
| EarI | CTCTTC | 5 cut(s) | 123, 141, 384, 463, 698 |
| EciI | GGCGGA | 2 cut(s) | 420, 730 |
| Ecl136II | GAGCTC | 1 cut(s) | 835 |
| Eco147I | AGGCCT | 1 cut(s) | 61 |
| Eco24I | GRGCYC | 2 cut(s) | 827, 837 |
| Eco31I | GGTCTC | 1 cut(s) | 256 |
| Eco53kI | GAGCTC | 1 cut(s) | 835 |
| EcoICRI | GAGCTC | 1 cut(s) | 835 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 629 |
| EcoRII | CCWGG | 1 cut(s) | 711 |
| EcoT38I | GRGCYC | 2 cut(s) | 827, 837 |
| FaeI | CATG | 4 cut(s) | 211, 217, 753, 811 |
| FaqI | GGGAC | 3 cut(s) | 545, 556, 950 |
| FatI | CATG | 4 cut(s) | 207, 213, 749, 807 |
| FauI | CCCGC | 4 cut(s) | 234, 351, 897, 926 |
| Fnu4HI | GCNGC | 7 cut(s) | 84, 454, 645, 732, 848, 855, 900 |
| FokI | GGATG | 6 cut(s) | 114, 335, 524, 707, 756, 928 |
| FriOI | GRGCYC | 2 cut(s) | 827, 837 |
| Fsp4HI | GCNGC | 7 cut(s) | 84, 454, 645, 732, 848, 855, 900 |
| FspBI | CTAG | 2 cut(s) | 339, 410 |
| FspI | TGCGCA | 1 cut(s) | 858 |
| GlaI | GCGC | 3 cut(s) | 782, 858, 903 |
| GluI | GCNGC | 7 cut(s) | 84, 454, 645, 732, 848, 855, 900 |
| HaeII | RGCGCY | 1 cut(s) | 784 |
| HaeIII | GGCC | 4 cut(s) | 61, 71, 224, 869 |
| HhaI | GCGC | 3 cut(s) | 783, 859, 904 |
| Hin1II | CATG | 4 cut(s) | 211, 217, 753, 811 |
| Hin6I | GCGC | 3 cut(s) | 781, 857, 902 |
| HinP1I | GCGC | 3 cut(s) | 781, 857, 902 |
| HinfI | GANTC | 6 cut(s) | 115, 320, 657, 716, 737, 938 |
| HphI | GGTGA | 2 cut(s) | 327, 712 |
| Hpy166II | GTNNAC | 1 cut(s) | 592 |
| Hpy188I | TCNGA | 2 cut(s) | 527, 685 |
| Hpy188III | TCNNGA | 1 cut(s) | 773 |
| Hpy8I | GTNNAC | 1 cut(s) | 592 |
| Hpy99I | CGWCG | 1 cut(s) | 305 |
| HpyAV | CCTTC | 6 cut(s) | 247, 522, 665, 748, 794, 951 |
| HpyCH4IV | ACGT | 3 cut(s) | 195, 400, 534 |
| HpyCH4V | TGCA | 2 cut(s) | 86, 132 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 480, 556, 740, 856 |
| HpyF3I | CTNAG | 3 cut(s) | 56, 552, 720 |
| HpySE526I | ACGT | 3 cut(s) | 195, 400, 534 |
| Hsp92II | CATG | 4 cut(s) | 211, 217, 753, 811 |
| HspAI | GCGC | 3 cut(s) | 781, 857, 902 |
| Kpn2I | TCCGGA | 1 cut(s) | 772 |
| KpnI | GGTACC | 1 cut(s) | 912 |
| Kzo9I | GATC | 4 cut(s) | 9, 241, 291, 766 |
| LmnI | GCTCC | 6 cut(s) | 288, 437, 634, 664, 778, 830 |
| Lsp1109I | GCAGC | 3 cut(s) | 70, 841, 911 |
| LweI | GCATC | 1 cut(s) | 270 |
| MaeI | CTAG | 2 cut(s) | 339, 410 |
| MaeII | ACGT | 3 cut(s) | 195, 400, 534 |
| MaeIII | GTNAC | 4 cut(s) | 333, 343, 369, 514 |
| MalI | GATC | 4 cut(s) | 11, 243, 293, 768 |
| MboI | GATC | 4 cut(s) | 9, 241, 291, 766 |
| MfeI | CAATTG | 1 cut(s) | 597 |
| MhlI | GDGCHC | 3 cut(s) | 712, 827, 837 |
| MluCI | AATT | 1 cut(s) | 597 |
| MlyI | GAGTC | 3 cut(s) | 109, 710, 932 |
| MroI | TCCGGA | 1 cut(s) | 772 |
| MseI | TTAA | 3 cut(s) | 273, 288, 537 |
| MslI | CAYNNNNRTG | 4 cut(s) | 17, 212, 234, 842 |
| MspA1I | CMGCKG | 1 cut(s) | 734 |
| MspCI | CTTAAG | 1 cut(s) | 287 |
| MspR9I | CCNGG | 6 cut(s) | 99, 435, 458, 499, 713, 913 |
| MunI | CAATTG | 1 cut(s) | 597 |
| MvaI | CCWGG | 1 cut(s) | 713 |
| MvnI | CGCG | 1 cut(s) | 904 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 480, 556, 740, 856 |
| NciI | CCSGG | 5 cut(s) | 99, 435, 458, 499, 913 |
| NdeII | GATC | 4 cut(s) | 9, 241, 291, 766 |
| NlaIII | CATG | 4 cut(s) | 211, 217, 753, 811 |
| NlaIV | GGNNCC | 5 cut(s) | 225, 314, 636, 826, 910 |
| NmeAIII | GCCGAG | 1 cut(s) | 634 |
| NmuCI | GTSAC | 4 cut(s) | 333, 343, 369, 514 |
| NsbI | TGCGCA | 1 cut(s) | 858 |
| NspI | RCATGY | 1 cut(s) | 211 |
| PceI | AGGCCT | 1 cut(s) | 61 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 257, 266, 531 |
| PfeI | GAWTC | 3 cut(s) | 320, 657, 737 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 750 |
| PfoI | TCCNGGA | 1 cut(s) | 97 |
| PkrI | GCNGC | 7 cut(s) | 85, 455, 646, 733, 849, 856, 901 |
| PleI | GAGTC | 3 cut(s) | 109, 710, 932 |
| PpsI | GAGTC | 3 cut(s) | 109, 710, 932 |
| PshBI | ATTAAT | 1 cut(s) | 273 |
| Psp124BI | GAGCTC | 1 cut(s) | 837 |
| Psp6I | CCWGG | 1 cut(s) | 711 |
| PspGI | CCWGG | 1 cut(s) | 711 |
| PspN4I | GGNNCC | 5 cut(s) | 225, 314, 636, 826, 910 |
| PspPI | GGNCC | 1 cut(s) | 223 |
| RsaI | GTAC | 4 cut(s) | 142, 593, 818, 910 |
| RsaNI | GTAC | 4 cut(s) | 141, 592, 817, 909 |
| RseI | CAYNNNNRTG | 4 cut(s) | 17, 212, 234, 842 |
| SacI | GAGCTC | 1 cut(s) | 837 |
| SaqAI | TTAA | 3 cut(s) | 273, 288, 537 |
| SatI | GCNGC | 7 cut(s) | 84, 454, 645, 732, 848, 855, 900 |
| Sau3AI | GATC | 4 cut(s) | 9, 241, 291, 766 |
| Sau96I | GGNCC | 1 cut(s) | 223 |
| SchI | GAGTC | 3 cut(s) | 109, 710, 932 |
| ScrFI | CCNGG | 6 cut(s) | 99, 435, 458, 499, 713, 913 |
| SduI | GDGCHC | 3 cut(s) | 712, 827, 837 |
| SfaNI | GCATC | 1 cut(s) | 270 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 17, 212, 234, 842 |
| SmlI | CTYRAG | 3 cut(s) | 65, 287, 943 |
| SmoI | CTYRAG | 3 cut(s) | 65, 287, 943 |
| Sse9I | AATT | 1 cut(s) | 597 |
| SseBI | AGGCCT | 1 cut(s) | 61 |
| SspMI | CTAG | 2 cut(s) | 339, 410 |
| SstI | GAGCTC | 1 cut(s) | 837 |
| StuI | AGGCCT | 1 cut(s) | 61 |
| StyD4I | CCNGG | 6 cut(s) | 97, 433, 456, 497, 711, 911 |
| TaiI | ACGT | 3 cut(s) | 198, 403, 537 |
| TaqI | TCGA | 5 cut(s) | 240, 251, 269, 294, 492 |
| TasI | AATT | 1 cut(s) | 597 |
| TatI | WGTACW | 1 cut(s) | 816 |
| TauI | GCSGC | 4 cut(s) | 456, 647, 734, 850 |
| TfiI | GAWTC | 3 cut(s) | 320, 657, 737 |
| Tru1I | TTAA | 3 cut(s) | 273, 288, 537 |
| Tru9I | TTAA | 3 cut(s) | 273, 288, 537 |
| TseFI | GTSAC | 4 cut(s) | 333, 343, 369, 514 |
| TseI | GCWGC | 3 cut(s) | 83, 854, 899 |
| Tsp45I | GTSAC | 4 cut(s) | 333, 343, 369, 514 |
| TspDTI | ATGAA | 4 cut(s) | 17, 200, 893, 932 |
| TspGWI | ACGGA | 1 cut(s) | 416 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 750 |
| Vha464I | CTTAAG | 1 cut(s) | 287 |
| VspI | ATTAAT | 1 cut(s) | 273 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 629 |
| XceI | RCATGY | 1 cut(s) | 211 |
| XspI | CTAG | 2 cut(s) | 339, 410 |