Rroxscaffold_5G00352960

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000087
Physical Location & Seq
Forward (+)
30404572 .. 30406535
1964 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00352960.1

Sequence Viewer

Length: 573 bp
ATGAGAGCGACGTCGATCCCGGGGAGGCACAAGAAGTCACGGTGGCTATTCCCGATGGCATCCCTAGCGGACGAGACCGTGTGCGACGAGCCCGGGAGGAGTATGACTATGAAGGAGATTATCACGATGAGATTGAAGTGGGGAATACCGGATGAGGTAGAACTTAGGCCTCTAAAGGCTGGAGAGATGGCTGCGAATCCTCCTCCGGGATGGGTGGCGCCGCACGAGAACAAGCTTCACCAAGGGCTATCATTACCGCTGCCCCCGGTCTCTCCGGCAAGTGAAGTATCTTCATGGGGAGAAGTCAAAGCCGGAGAAGGAGCGGGACTCCTTGAAGAGGAATGTAGAGTTGCTAACTCGAAGGTGATCAAGCTAAAGGCGGAGAAGAAGATCGCGGAGCTTGAGGGTGAACCGTTCAGGGCAAGGGATAAGTTGGGAAGTGCCCGGGACTCGGCGAAAGAAGCCGAAGAATCCGCCAAGTCATGGAAGGCAAAAGCGGGGCTTCGGAGCAGCGCCTTCCCATCGAAAGGCGGAGGCCGTGACCGAGTACAAGGGCTCCCAAGAGGTTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

190

Amino Acids

20.6

Weight (kDa)

9.3

Isoelectric Point (pI)

48.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000087)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28970 FvH4_2g03432 FvH4_2g17701 FvH4_4g10000 FvH4_4g15481 FvH4_4g15603 FvH4_6g16061 FvH4_6g25501
rosa_chinensis RchiOBHm_Chr2g0137471 RchiOBHm_Chr5g0054331
rosa_laevigata RLG00000019477 RLG00000022653 RLG00000029242
rosa_multiflora Rmu_co8012786.1_g000001 Rmu_co8165502.1_g000001 Rmu_co8383963.1_g000001 Rmu_co8428657.1_g000002 Rmu_co8441559.1_g000002 Rmu_co8493267.1_g000002 Rmu_co8512765.1_g000001 Rmu_co8522487.1_g000001 Rmu_sc0000045.1_g000034 Rmu_sc0000077.1_g000002 Rmu_sc0000177.1_g000003 Rmu_sc0000194.1_g000003 Rmu_sc0000239.1_g000073 Rmu_sc0000265.1_g000006 Rmu_sc0000271.1_g000031 Rmu_sc0000276.1_g000021 Rmu_sc0000279.1_g000008 Rmu_sc0000280.1_g000017 Rmu_sc0000315.1_g000047 Rmu_sc0000381.1_g000029 Rmu_sc0000423.1_g000013 Rmu_sc0000455.1_g000020 Rmu_sc0000596.1_g000032 Rmu_sc0000605.1_g000020 Rmu_sc0000643.1_g000006 Rmu_sc0000676.1_g000028 Rmu_sc0000698.1_g000063 Rmu_sc0000698.1_g000064 Rmu_sc0000706.1_g000030 Rmu_sc0000744.1_g000078 Rmu_sc0000744.1_g000098 Rmu_sc0000779.1_g000016 Rmu_sc0000808.1_g000006 Rmu_sc0000830.1_g000044 Rmu_sc0000842.1_g000021 Rmu_sc0000883.1_g000019 Rmu_sc0000904.1_g000013 Rmu_sc0000924.1_g000001 Rmu_sc0000959.1_g000012 Rmu_sc0001045.1_g000005 Rmu_sc0001069.1_g000021 Rmu_sc0001107.1_g000001 Rmu_sc0001155.1_g000006 Rmu_sc0001244.1_g000023 Rmu_sc0001302.1_g000017 Rmu_sc0001382.1_g000007 Rmu_sc0001393.1_g000026 Rmu_sc0001436.1_g000015 Rmu_sc0001464.1_g000021 Rmu_sc0001477.1_g000001 Rmu_sc0001483.1_g000024 Rmu_sc0001483.1_g000026 Rmu_sc0001499.1_g000020 Rmu_sc0001518.1_g000001 Rmu_sc0001520.1_g000003 Rmu_sc0001522.1_g000020 Rmu_sc0001529.1_g000008 Rmu_sc0001554.1_g000016 Rmu_sc0001563.1_g000018 Rmu_sc0001565.1_g000024 Rmu_sc0001578.1_g000014 Rmu_sc0001611.1_g000003 Rmu_sc0001700.1_g000026 Rmu_sc0001849.1_g000075 Rmu_sc0001866.1_g000011 Rmu_sc0001898.1_g000013 Rmu_sc0002029.1_g000007 Rmu_sc0002082.1_g000055 Rmu_sc0002206.1_g000032 Rmu_sc0002253.1_g000031 Rmu_sc0002264.1_g000020 Rmu_sc0002414.1_g000024 Rmu_sc0002451.1_g000063 Rmu_sc0002490.1_g000015 Rmu_sc0002539.1_g000010 Rmu_sc0002545.1_g000060 Rmu_sc0002564.1_g000020 Rmu_sc0002584.1_g000062 Rmu_sc0002669.1_g000034 Rmu_sc0002669.1_g000035 Rmu_sc0002690.1_g000010 Rmu_sc0002764.1_g000070 Rmu_sc0002786.1_g000006 Rmu_sc0002804.1_g000013 Rmu_sc0002868.1_g000015 Rmu_sc0002868.1_g000055 Rmu_sc0002889.1_g000039 Rmu_sc0002892.1_g000070 Rmu_sc0002926.1_g000001 Rmu_sc0002986.1_g000063 Rmu_sc0003032.1_g000023 Rmu_sc0003033.1_g000059 Rmu_sc0003063.1_g000022 Rmu_sc0003079.1_g000001 Rmu_sc0003092.1_g000012 Rmu_sc0003244.1_g000013 Rmu_sc0003276.1_g000004 Rmu_sc0003328.1_g000003 Rmu_sc0003352.1_g000034 Rmu_sc0003352.1_g000035 Rmu_sc0003419.1_g000038 Rmu_sc0003551.1_g000015 Rmu_sc0003669.1_g000036 Rmu_sc0003760.1_g000029 Rmu_sc0003781.1_g000021 Rmu_sc0003865.1_g000002 Rmu_sc0004012.1_g000010 Rmu_sc0004140.1_g000028 Rmu_sc0004152.1_g000002 Rmu_sc0004303.1_g000009 Rmu_sc0004336.1_g000039 Rmu_sc0004365.1_g000012 Rmu_sc0004365.1_g000013 Rmu_sc0004379.1_g000010 Rmu_sc0004529.1_g000017 Rmu_sc0004529.1_g000018 Rmu_sc0004536.1_g000025 Rmu_sc0004574.1_g000019 Rmu_sc0004602.1_g000042 Rmu_sc0004836.1_g000018 Rmu_sc0004841.1_g000037 Rmu_sc0004903.1_g000006 Rmu_sc0004977.1_g000006 Rmu_sc0005137.1_g000025 Rmu_sc0005292.1_g000031 Rmu_sc0005292.1_g000032 Rmu_sc0005353.1_g000014 Rmu_sc0005406.1_g000005 Rmu_sc0005469.1_g000016 Rmu_sc0005506.1_g000003 Rmu_sc0005507.1_g000003 Rmu_sc0005629.1_g000006 Rmu_sc0005664.1_g000033 Rmu_sc0005665.1_g000042 Rmu_sc0005685.1_g000003 Rmu_sc0006375.1_g000004 Rmu_sc0006444.1_g000020 Rmu_sc0006453.1_g000012 Rmu_sc0006676.1_g000013 Rmu_sc0006934.1_g000001 Rmu_sc0006945.1_g000001 Rmu_sc0006945.1_g000006 Rmu_sc0006954.1_g000015 Rmu_sc0007102.1_g000012 Rmu_sc0007144.1_g000007 Rmu_sc0007144.1_g000008 Rmu_sc0007230.1_g000003 Rmu_sc0007415.1_g000040 Rmu_sc0007729.1_g000001 Rmu_sc0007920.1_g000017 Rmu_sc0008058.1_g000023 Rmu_sc0008199.1_g000008 Rmu_sc0008232.1_g000010 Rmu_sc0008232.1_g000011 Rmu_sc0008336.1_g000011 Rmu_sc0008581.1_g000007 Rmu_sc0008623.1_g000002 Rmu_sc0009255.1_g000007 Rmu_sc0009479.1_g000008 Rmu_sc0009483.1_g000001 Rmu_sc0009641.1_g000001 Rmu_sc0009660.1_g000003 Rmu_sc0009978.1_g000010 Rmu_sc0010048.1_g000009 Rmu_sc0010547.1_g000007 Rmu_sc0010988.1_g000006 Rmu_sc0011148.1_g000003 Rmu_sc0011203.1_g000010 Rmu_sc0011375.1_g000004 Rmu_sc0011375.1_g000005 Rmu_sc0011559.1_g000005 Rmu_sc0012199.1_g000001 Rmu_sc0013224.1_g000005 Rmu_sc0013931.1_g000004 Rmu_sc0013931.1_g000005 Rmu_sc0013985.1_g000006 Rmu_sc0014406.1_g000001 Rmu_sc0014463.1_g000002 Rmu_sc0016218.1_g000005 Rmu_sc0019345.1_g000002 Rmu_sc0019655.1_g000001 Rmu_sc0020833.1_g000001 Rmu_sc0024204.1_g000001 Rmu_sc0024309.1_g000001 Rmu_sc0027177.1_g000002 Rmu_sc0027778.1_g000002 Rmu_sc0028215.1_g000001 Rmu_sc0029924.1_g000001 Rmu_sc0032552.1_g000001 Rmu_sc0036156.1_g000001 Rmu_sc0037073.1_g000001 Rmu_sc0040495.1_g000001 Rmu_ssc0000255.1_g000056 Rmu_ssc0000309.1_g000006 Rmu_ssc0000312.1_g000005 Rmu_ssc0000371.1_g000021 Rmu_ssc0000372.1_g000010 Rmu_ssc0000372.1_g000011 Rmu_ssc0000372.1_g000069 Rmu_ssc0000386.1_g000005 Rmu_ssc0000386.1_g000006 Rmu_ssc0000443.1_g000032
rosa_roxburghii Rroxscaffold_154G00447940 Rroxscaffold_1G00009660 Rroxscaffold_1G00016990 Rroxscaffold_1G00021370 Rroxscaffold_1G00037860 Rroxscaffold_2G00101680 Rroxscaffold_2G00101690 Rroxscaffold_2G00122690 Rroxscaffold_2G00122700 Rroxscaffold_2G00123340 Rroxscaffold_2G00123350 Rroxscaffold_2G00125480 Rroxscaffold_2G00136130 Rroxscaffold_2G00146590 Rroxscaffold_3G00218350 Rroxscaffold_3G00218360 Rroxscaffold_3G00218370 Rroxscaffold_3G00218380 Rroxscaffold_3G00232530 Rroxscaffold_3G00262600 Rroxscaffold_3G00263070 Rroxscaffold_4G00289030 Rroxscaffold_4G00296530 Rroxscaffold_4G00306140 Rroxscaffold_4G00306150 Rroxscaffold_4G00306380 Rroxscaffold_4G00306390 Rroxscaffold_4G00306400 Rroxscaffold_4G00309560 Rroxscaffold_4G00316600 Rroxscaffold_4G00322820 Rroxscaffold_4G00322830 Rroxscaffold_4G00324370 Rroxscaffold_4G00332350 Rroxscaffold_5G00346450 Rroxscaffold_5G00352960 Rroxscaffold_5G00352970 Rroxscaffold_5G00360310 Rroxscaffold_5G00373670 Rroxscaffold_5G00378610 Rroxscaffold_5G00378940 Rroxscaffold_6G00388240 Rroxscaffold_6G00389010 Rroxscaffold_6G00389030 Rroxscaffold_6G00399900 Rroxscaffold_6G00399910 Rroxscaffold_6G00400260 Rroxscaffold_6G00400270 Rroxscaffold_6G00400280 Rroxscaffold_7G00164100 Rroxscaffold_7G00176300 Rroxscaffold_7G00176310 Rroxscaffold_7G00177210 Rroxscaffold_7G00204300 Rroxscaffold_7G00204310 Rroxscaffold_7G00204320
rosa_rugosa Rorug06G0076500
rosa_samantha Rh1AG108400 Rh2AG377100 Rh2AG377200 Rh2BG383500 Rh2CG362800 Rh2DG399900 Rh2DG439600 Rh2DG672800 Rh6DG186300 Rh7AG351400 Rh7BG368500 Rh7CG368800 Rh7CG411100 Rh7DG424400
rosa_wichuraiana Rw1G021100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 14
AccB1I GGYRCC 1 cut(s) 217
AccB7I CCANNNNNTGG 1 cut(s) 483
AccBSI CCGCTC 1 cut(s) 323
AccII CGCG 1 cut(s) 395
AciI CCGC 9 cut(s) 68, 221, 257, 323, 380, 395, 474, 497, 531
AclWI GGATC 1 cut(s) 10
AcyI GRCGYC 2 cut(s) 11, 218
AfaI GTAC 1 cut(s) 549
AfiI CCNNNNNNNGG 5 cut(s) 206, 337, 451, 483, 527
AgsI TTSAA 2 cut(s) 136, 335
AluBI AGCT 3 cut(s) 235, 373, 400
AluI AGCT 3 cut(s) 235, 373, 400
Alw26I GTCTC 2 cut(s) 68, 274
AlwI GGATC 1 cut(s) 10
Ama87I CYCGRG 3 cut(s) 19, 92, 444
AoxI GGCC 2 cut(s) 167, 535
ApeKI GCWGC 3 cut(s) 191, 259, 510
AspLEI GCGC 2 cut(s) 220, 515
AsuC2I CCSGG 8 cut(s) 20, 21, 93, 94, 207, 266, 445, 446
AsuHPI GGTGA 3 cut(s) 230, 376, 419
AvaI CYCGRG 3 cut(s) 19, 92, 444
BaeGI GKGCMC 1 cut(s) 445
BanI GGYRCC 1 cut(s) 217
BanII GRGCYC 2 cut(s) 93, 558
BauI CACGAG 1 cut(s) 224
BbvI GCAGC 3 cut(s) 178, 246, 522
BccI CCATC 4 cut(s) 49, 181, 204, 529
BceAI ACGGC 1 cut(s) 522
BclI TGATCA 1 cut(s) 366
BcnI CCSGG 8 cut(s) 20, 21, 93, 94, 207, 266, 445, 446
BcoDI GTCTC 2 cut(s) 68, 274
BfaI CTAG 1 cut(s) 65
BfoI RGCGCY 2 cut(s) 221, 516
BisI GCNGC 4 cut(s) 192, 221, 260, 511
BlsI GCNGC 4 cut(s) 193, 222, 261, 512
Bme1390I CCNGG 8 cut(s) 20, 21, 93, 94, 207, 266, 445, 446
BmeT110I CYCGRG 3 cut(s) 19, 92, 444
BmiI GGNNCC 2 cut(s) 219, 557
BmrFI CCNGG 8 cut(s) 20, 21, 93, 94, 207, 266, 445, 446
BmsI GCATC 1 cut(s) 68
BplI GAGNNNNNCTC 2 cut(s) 312, 344
BpmI CTGGAG 1 cut(s) 201
BpuEI CTTGAG 1 cut(s) 422
BpuMI CCSGG 8 cut(s) 20, 21, 93, 94, 207, 266, 445, 446
BsaHI GRCGYC 2 cut(s) 11, 218
BsaI GGTCTC 2 cut(s) 68, 274
BsaJI CCNNGG 6 cut(s) 19, 20, 92, 241, 264, 444
BsaWI WCCGGW 1 cut(s) 148
BsaXI ACNNNNNCTCC 2 cut(s) 540, 570
Bsc4I CCNNNNNNNGG 5 cut(s) 206, 337, 451, 483, 527
BseDI CCNNGG 6 cut(s) 19, 20, 92, 241, 264, 444
BseGI GGATG 3 cut(s) 59, 157, 215
BseLI CCNNNNNNNGG 5 cut(s) 206, 337, 451, 483, 527
BseRI GAGGAG 2 cut(s) 112, 192
BseSI GKGCMC 1 cut(s) 445
BseXI GCAGC 3 cut(s) 178, 246, 522
Bsh1236I CGCG 1 cut(s) 395
BshFI GGCC 2 cut(s) 169, 537
BshNI GGYRCC 1 cut(s) 217
BsiHKCI CYCGRG 3 cut(s) 19, 92, 444
BsiSI CCGG 8 cut(s) 20, 93, 149, 206, 266, 275, 312, 445
BslFI GGGAC 2 cut(s) 339, 461
BslI CCNNNNNNNGG 5 cut(s) 206, 337, 451, 483, 527
BsmAI GTCTC 2 cut(s) 68, 274
BsmFI GGGAC 2 cut(s) 339, 461
BsnI GGCC 2 cut(s) 169, 537
Bso31I GGTCTC 2 cut(s) 68, 274
BsoBI CYCGRG 3 cut(s) 19, 92, 444
Bsp1286I GDGCHC 3 cut(s) 93, 445, 558
Bsp143I GATC 3 cut(s) 15, 366, 390
BspACI CCGC 9 cut(s) 68, 221, 257, 323, 380, 395, 474, 497, 531
BspANI GGCC 2 cut(s) 169, 537
BspFNI CGCG 1 cut(s) 395
BspLI GGNNCC 2 cut(s) 219, 557
BspPI GGATC 1 cut(s) 10
BspT107I GGYRCC 1 cut(s) 217
BspTNI GGTCTC 2 cut(s) 68, 274
BsrBI CCGCTC 1 cut(s) 323
BssECI CCNNGG 6 cut(s) 19, 20, 92, 241, 264, 444
BssMI GATC 3 cut(s) 15, 366, 390
BssNI GRCGYC 2 cut(s) 11, 218
BssSI CACGAG 1 cut(s) 224
BssT1I CCWWGG 1 cut(s) 241
Bst2BI CACGAG 1 cut(s) 224
Bst4CI ACNGT 3 cut(s) 42, 79, 414
Bst6I CTCTTC 1 cut(s) 330
BstACI GRCGYC 2 cut(s) 11, 218
BstDEI CTNAG 1 cut(s) 164
BstENI CCTNNNNNAGG 1 cut(s) 335
BstF5I GGATG 3 cut(s) 59, 157, 215
BstFNI CGCG 1 cut(s) 395
BstH2I RGCGCY 2 cut(s) 221, 516
BstHHI GCGC 2 cut(s) 220, 515
BstKTI GATC 3 cut(s) 18, 369, 393
BstMAI GTCTC 2 cut(s) 68, 274
BstMBI GATC 3 cut(s) 15, 366, 390
BstMWI GCNNNNNNNGC 2 cut(s) 65, 461
BstSCI CCNGG 8 cut(s) 18, 19, 91, 92, 205, 264, 443, 444
BstSLI GKGCMC 1 cut(s) 445
BstUI CGCG 1 cut(s) 395
BstV1I GCAGC 3 cut(s) 178, 246, 522
BsuRI GGCC 2 cut(s) 169, 537
BtsCI GGATG 3 cut(s) 59, 157, 215
CfoI GCGC 2 cut(s) 220, 515
Cfr9I CCCGGG 3 cut(s) 19, 92, 444
Csp6I GTAC 1 cut(s) 548
CviAII CATG 2 cut(s) 294, 483
CviQI GTAC 1 cut(s) 548
DdeI CTNAG 1 cut(s) 164
DinI GGCGCC 1 cut(s) 219
DpnI GATC 3 cut(s) 17, 368, 392
DpnII GATC 3 cut(s) 15, 366, 390
Eam1104I CTCTTC 1 cut(s) 330
EarI CTCTTC 1 cut(s) 330
EciI GGCGGA 3 cut(s) 395, 463, 546
Eco130I CCWWGG 1 cut(s) 241
Eco147I AGGCCT 1 cut(s) 169
Eco24I GRGCYC 2 cut(s) 93, 558
Eco31I GGTCTC 2 cut(s) 68, 274
Eco88I CYCGRG 3 cut(s) 19, 92, 444
EcoNI CCTNNNNNAGG 1 cut(s) 335
EcoT14I CCWWGG 1 cut(s) 241
EcoT38I GRGCYC 2 cut(s) 93, 558
EgeI GGCGCC 1 cut(s) 219
EheI GGCGCC 1 cut(s) 219
ErhI CCWWGG 1 cut(s) 241
FaeI CATG 2 cut(s) 297, 486
FaiI YATR 4 cut(s) 104, 110, 295, 484
FalI AAGNNNNNCTT 2 cut(s) 486, 518
FaqI GGGAC 2 cut(s) 339, 461
FatI CATG 2 cut(s) 293, 482
FauI CCCGC 2 cut(s) 316, 490
FbaI TGATCA 1 cut(s) 366
Fnu4HI GCNGC 4 cut(s) 192, 221, 260, 511
FokI GGATG 3 cut(s) 46, 164, 222
FriOI GRGCYC 2 cut(s) 93, 558
Fsp4HI GCNGC 4 cut(s) 192, 221, 260, 511
FspBI CTAG 1 cut(s) 65
GlaI GCGC 2 cut(s) 219, 514
GluI GCNGC 4 cut(s) 192, 221, 260, 511
GsuI CTGGAG 1 cut(s) 201
HaeII RGCGCY 2 cut(s) 221, 516
HaeIII GGCC 2 cut(s) 169, 537
HapII CCGG 8 cut(s) 20, 93, 149, 206, 266, 275, 312, 445
HhaI GCGC 2 cut(s) 220, 515
Hin1I GRCGYC 2 cut(s) 11, 218
Hin1II CATG 2 cut(s) 297, 486
Hin6I GCGC 2 cut(s) 218, 513
HinP1I GCGC 2 cut(s) 218, 513
HindIII AAGCTT 1 cut(s) 233
HinfI GANTC 4 cut(s) 196, 327, 449, 470
HpaII CCGG 8 cut(s) 20, 93, 149, 206, 266, 275, 312, 445
HphI GGTGA 3 cut(s) 230, 376, 419
Hpy166II GTNNAC 1 cut(s) 410
Hpy188I TCNGA 1 cut(s) 507
Hpy188III TCNNGA 2 cut(s) 52, 124
Hpy8I GTNNAC 1 cut(s) 410
Hpy99I CGWCG 3 cut(s) 13, 16, 89
HpyAV CCTTC 5 cut(s) 106, 311, 355, 481, 526
HpyCH4III ACNGT 3 cut(s) 42, 79, 414
HpyCH4IV ACGT 1 cut(s) 11
HpyF10VI GCNNNNNNNGC 2 cut(s) 65, 461
HpyF3I CTNAG 1 cut(s) 164
HpySE526I ACGT 1 cut(s) 11
Hsp92I GRCGYC 2 cut(s) 11, 218
Hsp92II CATG 2 cut(s) 297, 486
HspAI GCGC 2 cut(s) 218, 513
KasI GGCGCC 1 cut(s) 217
Ksp22I TGATCA 1 cut(s) 366
Kzo9I GATC 3 cut(s) 15, 366, 390
LmnI GCTCC 4 cut(s) 320, 397, 507, 561
Lsp1109I GCAGC 3 cut(s) 178, 246, 522
LweI GCATC 1 cut(s) 68
MaeI CTAG 1 cut(s) 65
MaeII ACGT 1 cut(s) 11
MaeIII GTNAC 2 cut(s) 36, 539
MalI GATC 3 cut(s) 17, 368, 392
MbiI CCGCTC 1 cut(s) 323
MboI GATC 3 cut(s) 15, 366, 390
MboII GAAGA 5 cut(s) 282, 347, 397, 400, 479
MhlI GDGCHC 3 cut(s) 93, 445, 558
Mly113I GGCGCC 1 cut(s) 218
MlyI GAGTC 2 cut(s) 321, 443
MspA1I CMGCKG 1 cut(s) 259
MspI CCGG 8 cut(s) 20, 93, 149, 206, 266, 275, 312, 445
MspR9I CCNGG 8 cut(s) 20, 21, 93, 94, 207, 266, 445, 446
MvnI CGCG 1 cut(s) 395
MwoI GCNNNNNNNGC 2 cut(s) 65, 461
NarI GGCGCC 1 cut(s) 218
NciI CCSGG 8 cut(s) 20, 21, 93, 94, 207, 266, 445, 446
NdeII GATC 3 cut(s) 15, 366, 390
NlaIII CATG 2 cut(s) 297, 486
NlaIV GGNNCC 2 cut(s) 219, 557
NmeAIII GCCGAG 1 cut(s) 431
NmuCI GTSAC 2 cut(s) 36, 539
PceI AGGCCT 1 cut(s) 169
PfeI GAWTC 2 cut(s) 196, 470
PflMI CCANNNNNTGG 1 cut(s) 483
PfoI TCCNGGA 1 cut(s) 205
PkrI GCNGC 4 cut(s) 193, 222, 261, 512
PleI GAGTC 2 cut(s) 321, 443
PluTI GGCGCC 1 cut(s) 221
PpsI GAGTC 2 cut(s) 321, 443
PspN4I GGNNCC 2 cut(s) 219, 557
RsaI GTAC 1 cut(s) 549
RsaNI GTAC 1 cut(s) 548
SatI GCNGC 4 cut(s) 192, 221, 260, 511
Sau3AI GATC 3 cut(s) 15, 366, 390
SchI GAGTC 2 cut(s) 321, 443
ScrFI CCNGG 8 cut(s) 20, 21, 93, 94, 207, 266, 445, 446
SduI GDGCHC 3 cut(s) 93, 445, 558
SetI ASST 7 cut(s) 14, 159, 237, 366, 375, 402, 568
SfaNI GCATC 1 cut(s) 68
SfoI GGCGCC 1 cut(s) 219
SmaI CCCGGG 3 cut(s) 21, 94, 446
SmlI CTYRAG 1 cut(s) 401
SmoI CTYRAG 1 cut(s) 401
SseBI AGGCCT 1 cut(s) 169
SsiI CCGC 9 cut(s) 68, 221, 257, 323, 380, 395, 474, 497, 531
SspDI GGCGCC 1 cut(s) 217
SspMI CTAG 1 cut(s) 65
StuI AGGCCT 1 cut(s) 169
StyD4I CCNGG 8 cut(s) 18, 19, 91, 92, 205, 264, 443, 444
StyI CCWWGG 1 cut(s) 241
TaaI ACNGT 3 cut(s) 42, 79, 414
TaiI ACGT 1 cut(s) 14
TaqI TCGA 3 cut(s) 14, 359, 524
TaqII GACCGA 1 cut(s) 558
TatI WGTACW 1 cut(s) 547
TauI GCSGC 1 cut(s) 223
TfiI GAWTC 2 cut(s) 196, 470
TseFI GTSAC 2 cut(s) 36, 539
TseI GCWGC 3 cut(s) 191, 259, 510
Tsp45I GTSAC 2 cut(s) 36, 539
TspDTI ATGAA 2 cut(s) 125, 282
TspMI CCCGGG 3 cut(s) 19, 92, 444
Van91I CCANNNNNTGG 1 cut(s) 483
XagI CCTNNNNNAGG 1 cut(s) 335
XmaI CCCGGG 3 cut(s) 19, 92, 444
XspI CTAG 1 cut(s) 65
ZraI GACGTC 1 cut(s) 12
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.